Stephen M. Smith

Professor of Biomedical Engineering
Associate Director, Oxford University Centre for Functional MRI of the Brain

• S.M. Smith, K.L. Miller, S. Moeller, J. Xu, E.J. Auerbach, M.W. Woolrich, C.F. Beckmann, M. Jenkinson, J. Andersson, M.F. Glasser, D. Van Essen, D. Feinberg, E. Yacoub, and K. Ugurbil. Temporally-independent functional modes of spontaneous brain activity. PNAS, 2012. In press.
• S.M. Smith. The future of FMRI connectivity. NeuroImage, 2012. In press.
• M.J. Brookes, M.W. Woolrich, H Luckhoo, D. Price, J.R. Hale, M.C. Stephenson, G.R. Barnes, S.M. Smith, and P.G. Morris. Investigating the electrophysiological basis of resting state networks using magnetoencephalography. PNAS, 108(40):16783-16788, 2011.
• M. Jenkinson, C.F. Beckmann, T.E.J. Behrens, M.W. Woolrich, and S.M. Smith. FSL. NeuroImage, 2011. In press.
• S.M. Smith, K.L. Miller, G. Salimi-Khorshidi, M. Webster, C.F. Beckmann, T.E. Nichols, J.D. Ramsey, and M.W. Woolrich. Network modelling methods for FMRI. NeuroImage, 54:875-891, 2011.
• D.C. Glahn, A.M. Winkler, P. Kochunov, L. Almasy, R. Duggirala, M.A. Carless, J.C. Curran, R.L. Olvera, A.R. Laird, S.M. Smith, C.F. Beckmann, P.T. Fox, and J. Blangero. Genetic control over the resting brain. PNAS, 107(3):1223-1228, 2010.
• N. Filippini, B.J. MacIntosh, M.G. Hough, G.M. Goodwin, G.B. Frisoni, S.M. Smith, P.M. Matthews, C.F. Beckmann, and C.E. Mackay. Distinct patterns of brain activity in young carriers of the APOE-e4 allele. PNAS, 106:7209-7214, 2009.
• S.M. Smith and T.E. Nichols. Threshold-free cluster enhancement: Addressing problems of smoothing, threshold dependence and localisation in cluster inference. NeuroImage, 44(1):83-98, 2009.
• S.M. Smith, P.T. Fox, K.L. Miller, D.C. Glahn, P.M. Fox, C.E. Mackay, N. Filippini, K.E. Watkins, R. Toro, A.R. Laird, and C.F. Beckmann. Correspondence of the brain's functional architecture during activation and rest. PNAS, 106(31):13040-13045, 2009.
• M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, and S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173-186, 2009.
• S.M. Smith, H. Johansen-Berg, M. Jenkinson, D. Rueckert, T.E. Nichols, K.L. Miller, M.D. Robson, D.K. Jones, J.C. Klein, A.J. Bartsch, and T.E.J. Behrens. Acquisition and voxelwise analysis of multi-subject diffusion data with Tract-Based Spatial Statistics. Nature Protocols, 2(3):499-503, 2007.
• J.S. Damoiseaux, S.A.R.B. Rombouts, F. Barkhof, P. Scheltens, C.J. Stam, S.M. Smith, and C.F. Beckmann. Consistent resting-state networks across healthy subjects. PNAS, 103(37):13848-13853, 2006.
• S.M. Smith, M. Jenkinson, H. Johansen-Berg, D. Rueckert, T.E. Nichols, C.E. Mackay, K.E. Watkins, O. Ciccarelli, M.Z. Cader, P.M. Matthews, and T.E.J. Behrens. Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data. NeuroImage, 31:1487-1505, 2006.
• C.F. Beckmann, M. De Luca, J.T. Devlin, and S.M. Smith. Investigations into resting-state connectivity using independent component analysis. Phil Trans Royal Society, 360(1457):1001-1013, 2005.
• M. De Luca, C.F. Beckmann, N. De Stefano, P.M. Matthews, and S.M. Smith. FMRI resting state networks define distinct modes of long-distance interactions in the human brain. NeuroImage, 29(4):1359-1367, 2005.
• S.M. Smith, C.F. Beckmann, N. Ramnani, M.W. Woolrich, P.R. Bannister, M. Jenkinson, P.M. Matthews, and D.J. McGonigle. Variability in FMRI: A re-examination of intersession differences. Human Brain Mapping, 24:248-257, 2005.
• C.F. Beckmann and S.M. Smith. Probabilistic independent component analysis for functional magnetic resonance imaging. IEEE TMI, 23(2):137-152, 2004.
• M.W. Woolrich, T.E.J. Behrens, C.F. Beckmann, M. Jenkinson, and S.M. Smith. Multi-level linear modelling for FMRI group analysis using Bayesian inference. NeuroImage, 21(4):1732-1747, 2004.
• T.E.J. Behrens, M.W. Woolrich, M. Jenkinson, H. Johansen-Berg, R.G. Nunes, S. Clare, P.M. Matthews, J.M. Brady, and S.M. Smith. Characterization and propagation of uncertainty in diffusion-weighted MR imaging. MRM, 50(5):1077-1088, 2003.
• S.M. Smith, Y. Zhang, M. Jenkinson, J. Chen, P.M. Matthews, A. Federico, and N. De Stefano. Accurate, robust and automated longitudinal and cross-sectional brain change analysis. NeuroImage, 17(1):479-489, 2002.
• S.M. Smith. Fast robust automated brain extraction. Human Brain Mapping, 17(3):143-155, 2002.
• M. Jenkinson and S.M. Smith. A global optimisation method for robust affine registration of brain images. Medical Image Analysis, 5(2):143-156, 2001.
• M.W. Woolrich, B.D. Ripley, J.M. Brady, and S.M. Smith. Temporal autocorrelation in univariate linear modelling of FMRI data. NeuroImage, 14(6):1370-1386, 2001.
• Y. Zhang, M. Brady, and S. Smith. Segmentation of brain MR images through a hidden Markov random field model and the expectation maximization algorithm. IEEE TMI, 20(1):45-57, 2001.