README of output files (SNP2GENE) from FUMA web application

Author: Kyoko Watanabe (k.watanabe@vu.nl)
Version: 1.0.0 (2 Feb 2017)
Version: 1.1.2 (27 Apr 2017)
Version: 1.3.0 (21 Feb 2018)
Version: 1.3.1 (27 Apr 2018)
Version: 1.3.4 (8 Feb 2019)
Version: 1.3.5 (27 May 2019)
Version: 1.3.5d (14 Oct 2019)

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# GenomicRiskLoci.txt
# Genomic risk loci defined by independent lead SNPs and maximum distance between their LD block
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Genomic locus : Index of genomic rick loci.
uniqID : Unique ID of SNPs consists of chr:position:allele1:allele2 where alleles are alphabetically ordered.
rsID : rsID of the top lead SNP based on dbSNP build 146.
chr : chromosome of top lead SNP
pos : position of top lead SNP on hg19
p : P-value of top lead SNP (from the input file).
start : Start position of the locus
end : End position of the locus
nSNPs : The number of unique candidate SNPs in the genomic locus, including non-GWAS-tagged SNPs (which are available in the use selected reference panel).
nGWASSNPs : The number of the GWAS-tagged candidate SNPs within the genomic locus. This is a subset of "nSNPs".
nIndSigSNPs : The number of the independent significant SNPs in the genomic locus (r2 < user defined parameter)
IndSigSNPs : rsID of independent significant SNPs in the genomic locus
nLeadSNPs : The number of lead SNPs in the genomic locus (r2 < 0.1)
LeadSNPs : rsID of lead SNPs in the genomic locus