README of output files (SNP2GENE) from FUMA web application

Author: Kyoko Watanabe (k.watanabe@vu.nl)
Version: 1.0.0 (2 Feb 2017)
Version: 1.1.2 (27 Apr 2017)
Version: 1.3.0 (21 Feb 2018)
Version: 1.3.1 (27 Apr 2018)
Version: 1.3.4 (8 Feb 2019)
Version: 1.3.5 (27 May 2019)
Version: 1.3.5d (14 Oct 2019)

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# IndSigSNPs.txt
# All independent significant SNPs at user defined r2
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No : Index of independent significant SNPs
Genomic Locus : Index of assigned genomic locus matched with "GenomicRiskLoci.txt". Multiple independent lead SNPs can be assigned to the same genomic locus.
uniqID : Unique ID of SNPs consists of chr:position:allele1:allele2 where alleles are alphabetically ordered.
rsID : rsID based on dbSNP build 146.
chr : chromosome
pos : position on hg19
p : P-value (from the input file).
nSNPs : The number of SNPs which are in LD of the independent significant SNP given r2, including non-GWAS-tagged SNPs (which are extracted from 1000G).
nGWASSNPs : The number of GWAS-tagged SNPs which are in LD of the ind. sig. SNP given r2.