README of output files (SNP2GENE) from FUMA web application

Author: Kyoko Watanabe (k.watanabe@vu.nl)
Version: 1.0.0 (2 Feb 2017)
Version: 1.1.2 (27 Apr 2017)
Version: 1.3.0 (21 Feb 2018)
Version: 1.3.1 (27 Apr 2018)
Version: 1.3.4 (8 Feb 2019)
Version: 1.3.5 (27 May 2019)
Version: 1.3.5d (14 Oct 2019)

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# annot.txt
# annotations of all SNPs which are in LD of any independent lead SNP
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uniqID : Unique ID of SNPs consists of chr:position:allele1:allele2 where alleles are alphabetically ordered.
CADD : CADD score which is computed based on 67 annotations. The higher score, the more deleterious the SNP is. 12.37 is the suggested threshold by Kicher et al. (2014).
RDB : RegulomeDB score which is the categorical score (from 1a to 7). 1a is the highest score that the SNP has the most biological evidence to be regulatory element.
E001~E129 : Chromatin state predicted by ChromHMM.
Others: When additional annotations are selected, each column represents one dataset. SNPs overlapping with the correspoinding annotation has 1, otherwise 0.