ensg symbol chr start end strand type entrezID HUGO pLI ncRVIS posMapSNPs posMapMaxCADD eqtlMapSNPs eqtlMapminP eqtlMapminQ eqtlMapts eqtlDirection ciMap ciMapts minGwasP IndSigSNPs GenomicLocus ENSG00000131584 ACAP3 1 1227756 1244989 -1 protein_coding 116983 ACAP3 0.0394309302206711 NA 0 0 7 1.6662e-06 0.0129531823471489 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000076864 RAP1GAP 1 21922708 21995801 -1 protein_coding 5909 RAP1GAP 0.974156915163255 -0.596613521 0 0 1 2.5188e-06 0.018480716138208 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000134697 GNL2 1 38032417 38061536 -1 protein_coding 29889 GNL2 0.453032469584323 0.270727321 0 0 0 NA NA NA NA Yes hESC 3.46178e-09 rs682571 1 ENSG00000188786 MTF1 1 38275239 38325292 -1 protein_coding 4520 MTF1 0.991394717050406 -1.990277896 0 0 0 NA NA NA NA Yes hESC 3.46178e-09 rs682571 1 ENSG00000230610 AL929472.1 1 38292232 38293886 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes hESC 3.46178e-09 rs682571 1 ENSG00000235673 RP11-109P14.8 1 38306658 38307348 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes hESC 3.46178e-09 rs682571 1 ENSG00000230955 RP11-109P14.10 1 38326369 38327252 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes hESC 3.46178e-09 rs682571 1 ENSG00000204084 INPP5B 1 38326369 38412729 -1 protein_coding 3633 INPP5B 7.43289930464084e-09 0.019111125 0 0 0 NA NA NA NA Yes hESC 3.46178e-09 rs682571 1 ENSG00000252448 SNORA63 1 38349909 38349989 1 snoRNA 6043 SNORA63 NA NA 0 0 0 NA NA NA NA Yes hESC 3.46178e-09 rs682571 1 ENSG00000222282 RNU6-584P 1 38350695 38350789 1 snRNA 106479825 RNU6-584P NA NA 0 0 0 NA NA NA NA Yes hESC 3.46178e-09 rs682571 1 ENSG00000185668 POU3F1 1 38509523 38512450 -1 protein_coding 5453 POU3F1 NA NA 0 0 0 NA NA NA NA Yes GM12878 3.46178e-09 rs682571 1 ENSG00000224592 RP5-884C9.2 1 38512986 38584697 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878 3.46178e-09 rs682571 1 ENSG00000116954 RRAGC 1 39303870 39325495 -1 protein_coding 64121 RRAGC 0.600078052257623 0.001374789 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000228436 RP5-864K19.4 1 39325672 39385068 1 antisense 105378663 LOC105378663 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000214114 MYCBP 1 39328636 39347289 -1 protein_coding 26292 MYCBP 0.739328409179167 0.104919211 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000131233 GJA9 1 39330175 39347289 -1 protein_coding 81025 GJA9 3.07324197077134e-06 0.301595819 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000174574 AKIRIN1 1 39456895 39471731 1 protein_coding 79647 AKIRIN1 0.672015819577841 -0.504508658 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000168653 NDUFS5 1 39491990 39500308 1 protein_coding 4725 NDUFS5 0.0982173317228148 -0.068682085 0 0 4 3.0109e-08 0.000133553803103536 eQTLGen_cis_eQTLs NA Yes Promoter_anchored_loops:Mesenchymal_Stem_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000127603 MACF1 1 39546988 39952849 1 protein_coding 23499 MACF1 1 -0.445430382 10 16.76 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000206654 RNU6-608P 1 39586612 39586715 -1 snRNA 106481373 RNU6-608P NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Lung:Psoas:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000222378 RNA5SP44 1 39619836 39619968 -1 rRNA 100873283 RNA5SP44 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000270040 RP11-416A14.1 1 39672184 39672629 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000226438 RP11-420K8.1 1 39715510 39723321 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adrenal:Aorta:Left_Ventricle:Liver:Psoas:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000217897 HSPE1P8 1 39769966 39770570 -1 pseudogene 100292290 HSPE1P8 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000255103 KIAA0754 1 39876151 39882154 1 protein_coding 643314 KIAA0754 0.0210361269465471 NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000183682 BMP8A 1 39957318 39991607 1 protein_coding 353500 BMP8A 0.456963119276428 NA 9 16.76 13 5.7892e-09 1.14373e-12 eQTLGen_cis_eQTLs:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Heart_Atrial_Appendage:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Testis:GTEx/v6/Heart_Atrial_Appendage NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000237624 OXCT2P1 1 39980628 39982162 1 pseudogene 192217 OXCT2P1 NA NA 0 0 9 1.40376e-05 2.4177e-23 GTEx/v8/Cells_Cultured_fibroblasts NA No NA NA rs682571 1 ENSG00000182109 RP11-69E11.4 1 39987952 40011859 -1 antisense NA NA NA NA 0 0 13 7.9366e-09 4.51001868436312e-05 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000243970 PPIEL 1 39997510 40024379 -1 pseudogene 728448 PPIEL NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000090621 PABPC4 1 40026488 40042462 -1 protein_coding 8761 PABPC4 0.992493064403533 NA 0 0 0 NA NA NA NA Yes Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000228060 RP11-69E11.8 1 40030832 40038875 1 antisense 101929516 LOC101929516 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000201457 SNORA55 1 40033046 40033180 -1 snoRNA 677834 SNORA55 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.46178e-09 rs682571 1 ENSG00000163909 HEYL 1 40089825 40105617 -1 protein_coding 26508 HEYL 6.80881163426979e-07 -0.34785424 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell 3.46178e-09 rs682571 1 ENSG00000225903 RP1-144F13.3 1 40099088 40099575 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell 3.46178e-09 rs682571 1 ENSG00000116981 NT5C1A 1 40124793 40137710 -1 protein_coding 84618 NT5C1A 8.15238589051518e-05 -0.103966484 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell 3.46178e-09 rs682571 1 ENSG00000116983 HPCAL4 1 40144320 40157361 -1 protein_coding 51440 HPCAL4 0.0184227514017707 2.624824964 0 0 12 1.369e-21 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell 3.46178e-09 rs682571 1 ENSG00000084072 PPIE 1 40157854 40229586 1 protein_coding 10450 PPIE 0.980809839859493 -0.248899387 0 0 9 1.5013e-07 0.000506851886615356 eQTLGen_cis_eQTLs NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell 3.46178e-09 rs682571 1 ENSG00000198754 OXCT2 1 40235195 40237020 -1 protein_coding 64064 OXCT2 NA NA 0 0 12 2.6118e-09 2.74687e-22 PsychENCODE_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Artery_Tibial:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v6/Artery_Tibial:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Promoter_anchored_loops:Bladder:Left_Ventricle:Spleen:IMR90:hESC 3.46178e-09 rs682571 1 ENSG00000198815 FOXJ3 1 42642210 42801548 -1 protein_coding 22887 FOXJ3 0.977575009123256 -1.12470823 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs4141741 2 ENSG00000227527 RP11-223A3.1 1 42801057 42804047 -1 sense_overlapping NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs4141741 2 ENSG00000066185 ZMYND12 1 42896000 42921938 -1 protein_coding 84217 ZMYND12 0.00105994735075674 -0.88231689 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs4141741 2 ENSG00000127125 PPCS 1 42921788 42939056 1 protein_coding 79717 PPCS 0.00353633641897521 -0.233646949 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs4141741 2 ENSG00000186409 CCDC30 1 42929001 43120335 1 protein_coding 728621 CCDC30 6.06674580228951e-12 -0.374475524 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs4141741 2 ENSG00000164008 C1orf50 1 43232940 43263968 1 protein_coding 79078 C1orf50 0.00701592646307591 0.028316302 0 0 4 1.49082e-05 0.0460054 GTEx/v8/Cells_EBV-transformed_lymphocytes NA No NA NA rs4141741 2 ENSG00000228452 RP5-994D16.9 1 43241484 43242461 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 2.14487e-08 rs4141741 2 ENSG00000177868 CCDC23 1 43272723 43282954 -1 protein_coding 374969 CCDC23 0.213154887650545 NA 0 0 88 4.5993e-10 0 eQTLGen_cis_eQTLs NA Yes Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000164010 ERMAP 1 43282795 43310660 1 protein_coding 114625 ERMAP 5.8055284133168e-05 0.252683207 0 0 0 NA NA NA NA Yes Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000228192 RP11-342M1.3 1 43300352 43312093 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000164011 ZNF691 1 43312280 43318148 1 protein_coding 51058 ZNF691 0.417758649657401 -0.577744535 0 0 0 NA NA NA NA Yes Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000233708 RP11-342M1.7 1 43352268 43354438 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.14487e-08 rs4141741 2 ENSG00000237090 RP11-342M1.6 1 43356765 43358101 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.14487e-08 rs4141741 2 ENSG00000225099 ATP6V1E1P1 1 43368903 43369583 1 pseudogene 343515 ATP6V1E1P1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000117394 SLC2A1 1 43391052 43424530 -1 protein_coding 6513 SLC2A1 0.939808130156394 -0.53204533 0 0 0 NA NA NA NA Yes Adult_Cortex:IMR90 2.14487e-08 rs4141741 2 ENSG00000227533 SLC2A1-AS1 1 43424720 43449029 1 lincRNA 440584 SLC2A1-AS1 NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:IMR90 2.14487e-08 rs4141741 2 ENSG00000186973 FAM183A 1 43610824 43622067 1 protein_coding 440585 FAM183A 0.0293267361122758 -0.403679933 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.14487e-08 rs4141741 2 ENSG00000117395 EBNA1BP2 1 43629846 43736607 -1 protein_coding 10969 EBNA1BP2 2.3767005478956e-06 NA 0 0 3 2.7941e-06 0.0204593929450369 eQTLGen_trans_eQTLs NA Yes Adult_Cortex:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.14487e-08 rs62064364;rs4141741 2:57 ENSG00000243710 WDR65 1 43637820 43720029 1 protein_coding 149465 WDR65 8.58277032784158e-09 0.128913991 0 0 0 NA NA NA NA Yes Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.14487e-08 rs4141741 2 ENSG00000179178 TMEM125 1 43735665 43739673 1 protein_coding 128218 TMEM125 0.000428556113626271 0.191656511 0 0 52 1.86626e-06 8.6038e-09 PsychENCODE_eQTLs:CMC_SVA_cis:GTEx/v8/Thyroid NA Yes Adult_Cortex:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.14487e-08 rs4141741 2 ENSG00000253313 C1orf210 1 43747554 43751288 -1 protein_coding 149466 C1orf210 0.00121963583096512 0.676593983 2 16.67 104 5.01338e-07 0.000395172487450603 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Testis:GTEx/v7/Testis NA Yes Promoter_anchored_loops:Adult_Cortex:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.14487e-08 rs4141741 2 ENSG00000066056 TIE1 1 43766664 43788779 1 protein_coding 7075 TIE1 8.71416663313257e-12 -0.019633805 30 16.67 112 6.32744e-37 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Hippocampus:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Tibial:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops:Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000117400 MPL 1 43803478 43818443 1 protein_coding 4352 MPL 1.43928006099179e-06 -0.172843809 19 22.4 112 1.2235e-46 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Testis:GTEx/v7/Testis NA Yes IMR90:Mesenchymal_Stem_Cell 2.14487e-08 rs4141741 2 ENSG00000234694 RP1-92O14.3 1 43820355 43824329 -1 antisense NA NA NA NA 11 22.4 112 1.1746e-39 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Artery_Aorta:GTEx/v8/Colon_Transverse:GTEx/v8/Testis:GTEx/v7/Testis NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell 2.14487e-08 rs4141741 2 ENSG00000117399 CDC20 1 43824626 43828874 1 protein_coding 991 CDC20 0.000181853834795088 -0.322700115 13 22.4 112 3.23779e-09 6.4396648691673e-07 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Muscle_Skeletal:GTEx/v8/Pituitary:GTEx/v8/Thyroid:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Thyroid NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell 2.14487e-08 rs4141741 2 ENSG00000066322 ELOVL1 1 43829068 43833696 -1 protein_coding 64834 ELOVL1 0.223414530247304 NA 17 22.4 110 1.5964e-23 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell 2.14487e-08 rs4141741 2 ENSG00000159479 MED8 1 43849588 43855479 -1 protein_coding 112950 MED8 8.1582621367423e-06 0.403723391 18 18.26 114 0 0 PsychENCODE_eQTLs:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD4_memory_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Artery_Aorta:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000229431 RP1-92O14.6 1 43850784 43854826 1 antisense NA NA NA NA 18 18.26 113 1.39556e-27 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Stomach:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Whole_Blood:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Muscle_Skeletal:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000198198 SZT2 1 43855553 43918321 1 protein_coding 23334 SZT2 1.51746679777732e-07 0.623916217 56 18.87 111 1.04383e-14 0 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood:GTEx/v8/Testis:GTEx/v7/Testis:GTEx/v6/Testis NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000229372 SZT2-AS1 1 43913447 43914315 -1 antisense 100873952 SZT2-AS1 NA NA 13 18.87 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000178922 HYI 1 43916824 43919660 -1 protein_coding 81888 HYI 3.15819250162145e-08 -0.187049626 14 18.87 112 1.0722694484e-21 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pituitary:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Artery_Tibial:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Stomach:GTEx/v6/Thyroid NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000229348 HYI-AS1 1 43919598 43922666 1 antisense 100873923 HYI-AS1 NA NA 14 18.87 105 1.04383e-14 0 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.14487e-08 rs4141741 2 ENSG00000142949 PTPRF 1 43990858 44089343 1 protein_coding 5792 PTPRF 0.999998378977356 -1.116923282 0 0 74 1.81594e-06 3.78389e-07 DICE/T_CD4_memory_TREG:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg NA Yes Adult_Cortex:Fetal_Cortex 2.14487e-08 rs4141741 2 ENSG00000236200 KDM4A-AS1 1 44165436 44173809 -1 antisense 100132774 KDM4A-AS1 NA NA 0 0 49 1.7065e-06 0.00505265721068972 eQTLGen_cis_eQTLs NA Yes Adult_Cortex:Fetal_Cortex NA rs4141741 2 ENSG00000126091 ST3GAL3 1 44171495 44396831 1 protein_coding 6487 ST3GAL3 0.573989459299218 0.35827043 0 0 41 2.1691e-06 0.00638168680551339 eQTLGen_cis_eQTLs NA Yes Adult_Cortex:Fetal_Cortex NA rs4141741 2 ENSG00000233674 RP11-184I16.3 1 44209142 44209412 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 2.14487e-08 rs4141741 2 ENSG00000237950 RP11-7O11.3 1 44410042 44412223 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 2.14487e-08 rs4141741 2 ENSG00000117408 IPO13 1 44412611 44433694 1 protein_coding 9670 IPO13 0.972444338181171 -1.047462746 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 2.14487e-08 rs4141741 2 ENSG00000132768 DPH2 1 44435672 44439041 1 protein_coding 1802 DPH2 0.00684674768380938 0.103530113 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell 2.14487e-08 rs4141741 2 ENSG00000117410 ATP6V0B 1 44440159 44443967 1 protein_coding 533 ATP6V0B 0.927635231427402 -0.400284464 0 0 1 7.78264e-05 6.17676e-09 GTEx/v8/Adipose_Visceral_Omentum NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell 2.14487e-08 rs4141741 2 ENSG00000159214 CCDC24 1 44457031 44462200 1 protein_coding 149473 CCDC24 2.01106420911485e-08 -0.436774622 0 0 2 3.728e-06 0.010763197586727 eQTLGen_cis_eQTLs NA No NA NA rs4141741 2 ENSG00000227163 RP5-1198O20.5 1 44553630 44554149 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 2.14487e-08 rs4141741 2 ENSG00000126106 TMEM53 1 45100910 45140227 -1 protein_coding 79639 TMEM53 0.0389751684862776 0.353320546 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs4141741 2 ENSG00000198520 C1orf228 1 45140364 45191263 1 protein_coding 339541 C1orf228 NA -0.536446772 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs4141741 2 ENSG00000200169 RNU5D-1 1 45196727 45196842 -1 snRNA 26830 RNU5D-1 NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs4141741 2 ENSG00000121310 ECHDC2 1 53361656 53392884 -1 protein_coding 55268 ECHDC2 1.18082144336839e-07 0.19221948 0 0 18 5.312e-10 2.02347227842979e-05 eQTLGen_trans_eQTLs NA No NA NA rs62064364;rs34000805 57:59 ENSG00000197568 HHLA3 1 70820488 70851022 1 protein_coding 11147 HHLA3 0.00618097014298229 -0.290407734 0 0 3 3.501e-06 0.024672557992741 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000137959 IFI44L 1 79085607 79111830 1 protein_coding 10964 IFI44L 2.21842256623261e-10 0.480155556 0 0 1 7.8513e-06 0.047777027027027 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000117519 CNN3 1 95362507 95392834 -1 protein_coding 1266 CNN3 0.864370512768343 NA 0 0 9 2.316e-07 0.00221700879765396 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000143416 SELENBP1 1 151336778 151345209 -1 protein_coding 8991 SELENBP1 1.22411207379355e-06 -0.425587274 0 0 2 3.265e-08 0.000421144350856811 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000159377 PSMB4 1 151372010 151374420 1 protein_coding 5692 PSMB4 0.398813284714522 -0.145832206 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs12133923 3 ENSG00000159527 PGLYRP3 1 153270338 153283194 -1 protein_coding 114771 PGLYRP3 9.00246757206822e-05 0.627415477 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000163218 PGLYRP4 1 153302596 153321316 -1 protein_coding 57115 PGLYRP4 2.63028984617915e-08 0.529329994 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell NA rs12133923 3 ENSG00000163220 S100A9 1 153330330 153333503 1 protein_coding 6280 S100A9 0.667440117616727 0.10100566 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell NA rs12133923 3 ENSG00000163221 S100A12 1 153346184 153348125 -1 protein_coding 6283 S100A12 0.0335297458461187 -0.048060867 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell NA rs12133923 3 ENSG00000237008 AL591704.5 1 153352297 153353275 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Trophoblast-like_Cell NA rs12133923 3 ENSG00000143546 S100A8 1 153362508 153363664 -1 protein_coding 6279 S100A8 0.186216605301329 -0.286220998 0 0 1 0.000129041 0.00536042 GTEx/v8/Skin_Sun_Exposed_Lower_leg NA No NA NA rs12133923 3 ENSG00000184330 S100A7A 1 153389000 153395701 1 protein_coding 338324 S100A7A 0.0315992767749722 0.979371556 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000263841 RN7SL44P 1 153472943 153473240 -1 misc_RNA 106480934 RN7SL44P NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex NA rs12133923 3 ENSG00000238279 BX470102.3 1 153506079 153507591 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000197956 S100A6 1 153507075 153508720 -1 protein_coding 6277 S100A6 0.178917966295076 0.53720034 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000196420 S100A5 1 153509623 153514241 -1 protein_coding 6276 S100A5 4.81203056762956e-05 0.864406767 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000196754 S100A2 1 153533584 153540366 -1 protein_coding 6273 S100A2 0.000135122428502476 0.051427591 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs12133923 3 ENSG00000188643 S100A16 1 153579362 153585621 -1 protein_coding 140576 S100A16 0.00563845182351615 -0.327655231 0 0 48 5.96467e-06 1.55135e-35 GTEx/v8/Brain_Cerebellum:GTEx/v8/Colon_Sigmoid:GTEx/v7/Brain_Cerebellum NA Yes Left_Ventricle 1.01391e-11 rs12133923 3 ENSG00000189334 S100A14 1 153586731 153589462 -1 protein_coding 57402 S100A14 0.0570469536230336 0.20033313 0 0 76 7.00654e-07 5.71047e-48 GTEx/v8/Esophagus_Mucosa:GTEx/v8/Thyroid NA Yes Left_Ventricle 1.01391e-11 rs12133923 3 ENSG00000189171 S100A13 1 153591263 153606568 -1 protein_coding 6284 S100A13 0.0351531421862098 -0.436440334 0 0 68 8.5198e-15 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Whole_Blood:GTEx/v8/Colon_Sigmoid:GTEx/v8/Cells_Cultured_fibroblasts NA No NA 1.01391e-11 rs12133923 3 ENSG00000160678 S100A1 1 153600402 153604513 1 protein_coding 6271 S100A1 0.00465602079501881 -0.05346962 0 0 76 6.66023e-14 0 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Lung:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic NA No NA 1.01391e-11 rs12133923 3 ENSG00000272030 RP1-178F15.4 1 153603914 153606873 -1 antisense NA NA NA NA 0 0 76 1.16739e-11 8.02253e-119 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Muscle_Skeletal:GTEx/v6/Heart_Atrial_Appendage NA No NA 1.01391e-11 rs12133923 3 ENSG00000160679 CHTOP 1 153606525 153618782 1 protein_coding 26097 CHTOP 0.998109469154056 0.088373592 0 0 79 1.90267e-07 3.87978e-81 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:CMC_SVA_cis:GTEx/v8/Artery_Tibial:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Muscle_Skeletal:GTEx/v7/Esophagus_Muscularis NA No NA 1.01391e-11 rs12133923 3 ENSG00000143553 SNAPIN 1 153631130 153634306 1 protein_coding 23557 SNAPIN 3.04880662881494e-05 0.367183084 0 0 47 1.1388e-06 0.00343625802506879 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia NA Yes Adult_Cortex:Fetal_Cortex 1.01391e-11 rs12133923 3 ENSG00000143621 ILF2 1 153634512 153643524 -1 protein_coding 3608 ILF2 0.997052017177466 -0.374027549 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs12133923 3 ENSG00000169418 NPR1 1 153651113 153666468 1 protein_coding 4881 NPR1 0.000172508543840191 -1.095207972 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000242565 RN7SL372P 1 153676564 153676859 1 misc_RNA 106479358 RN7SL372P NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000235015 RP11-216N14.1 1 153689779 153690823 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878 NA rs12133923 3 ENSG00000199565 Y_RNA 1 153698728 153698829 -1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878 NA rs12133923 3 ENSG00000143624 INTS3 1 153700543 153746555 1 protein_coding 65123 INTS3 0.999997023490929 -0.57894986 0 0 41 2.94084e-05 0.0180261086936395 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Adult_Cortex:Fetal_Cortex:GM12878 1.01391e-11 rs12133923 3 ENSG00000243613 RP11-216N14.8 1 153719327 153723703 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell NA rs12133923 3 ENSG00000233222 RP11-216N14.9 1 153723459 153724652 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell NA rs12133923 3 ENSG00000238511 snoU13 1 153726600 153726703 -1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell NA rs12133923 3 ENSG00000143554 SLC27A3 1 153746830 153752633 1 protein_coding 11000 SLC27A3 7.8014773851824e-11 -0.248954346 3 6.904 76 3.23775e-09 1.59235e-05 GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v7/Brain_Cerebellum NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.01391e-11 rs12133923 3 ENSG00000207039 Y_RNA 1 153758196 153758297 -1 misc_RNA NA NA NA NA 6 13.09 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell NA rs12133923 3 ENSG00000231827 RP11-216N14.5 1 153767649 153774567 1 pseudogene 343052 LOC343052 NA NA 17 18.31 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:Aorta:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.01391e-11 rs12133923 3 ENSG00000143614 GATAD2B 1 153777201 153895451 -1 protein_coding 57459 GATAD2B 0.998594716203308 -0.756320233 50 18.31 45 0 0 xQTLServer_eQTLs:GTEx/v8/Cells_Cultured_fibroblasts NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:Aorta:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.01391e-11 rs12133923 3 ENSG00000223599 RP11-216N14.7 1 153824582 153825890 -1 pseudogene NA NA NA NA 7 7.342 0 NA NA NA NA Yes Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.01391e-11 rs12133923 3 ENSG00000236327 RP11-759F5.1 1 153863071 153863341 1 pseudogene NA NA NA NA 6 5.928 0 NA NA NA NA Yes Promoter_anchored_loops:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 1.01391e-11 rs12133923 3 ENSG00000198837 DENND4B 1 153901977 153919172 -1 protein_coding 9909 DENND4B 0.999987069079939 NA 7 14.33 76 8.5268e-11 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Tibial:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Tibial:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Nerve_Tibial:GTEx/v7/Skin_Sun_Exposed_Lower_leg NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:Aorta:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.01391e-11 rs12133923 3 ENSG00000160741 CRTC2 1 153920145 153931101 -1 protein_coding 200186 CRTC2 0.996361791046642 -0.166194581 6 14.33 74 3.91638e-06 1.50324e-09 GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Muscle_Skeletal NA Yes Promoter_anchored_loops:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.01391e-11 rs12133923 3 ENSG00000143570 SLC39A1 1 153931575 153940188 -1 protein_coding 27173 SLC39A1 0.167076829803909 -0.194108872 5 13.23 78 6.9579e-111 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Whole_Blood:GTEx/v8/Colon_Transverse:GTEx/v8/Muscle_Skeletal:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Muscle_Skeletal NA Yes EP_links_oneway:Promoter_anchored_loops:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.01391e-11 rs12133923 3 ENSG00000273026 RP11-422P24.10 1 153938992 153939406 1 antisense NA NA NA NA 5 13.23 37 6.72921e-08 1.10215514633133e-05 PsychENCODE_eQTLs:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Nerve_Tibial NA Yes EP_links_oneway:Promoter_anchored_loops:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.01391e-11 rs12133923 3 ENSG00000143578 CREB3L4 1 153940010 153946839 1 protein_coding 148327 CREB3L4 8.06202744664506e-05 -0.607235894 6 13.23 80 2.319e-91 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Colon_Sigmoid:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pancreas:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Thyroid NA Yes EP_links_oneway:Promoter_anchored_loops:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.01391e-11 rs12133923 3 ENSG00000143543 JTB 1 153946745 153950164 -1 protein_coding 10899 JTB 0.645223905316483 -1.138138424 5 13.23 2 6.5073e-06 0.0409870641169854 eQTLGen_trans_eQTLs NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.01391e-11 rs12133923;rs62064364 3:57 ENSG00000272654 RP11-422P24.11 1 153950219 153951636 1 lincRNA NA NA NA NA 4 13.23 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.01391e-11 rs12133923 3 ENSG00000143545 RAB13 1 153954127 153958834 -1 protein_coding 5872 RAB13 0.57012570509712 -0.127798629 3 5.288 49 2.24408e-07 2.90366e-06 GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Heart_Atrial_Appendage:GTEx/v7/Heart_Atrial_Appendage:GTEx/v6/Adipose_Visceral_Omentum NA Yes EP_links_oneway:Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.01391e-11 rs12133923 3 ENSG00000177954 RPS27 1 153963235 153964626 1 protein_coding 6232 RPS27 0.697777961357601 -0.293706852 3 5.288 0 NA NA NA NA Yes Promoter_anchored_loops 1.01391e-11 rs12133923 3 ENSG00000143552 NUP210L 1 153965161 154127592 -1 protein_coding 91181 NUP210L 0.144640619732186 0.363113447 25 10.1 79 5.3286e-27 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Tibial:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Artery_Aorta:GTEx/v7/Nerve_Tibial:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid NA Yes Promoter_anchored_loops:IMR90 1.01391e-11 rs12133923 3 ENSG00000231416 RP11-422P24.9 1 153968108 153968436 1 pseudogene NA NA NA NA 3 3.58 0 NA NA NA NA Yes Promoter_anchored_loops 1.01391e-11 rs12133923 3 ENSG00000252669 U3 1 153970517 153970627 -1 snoRNA NA NA NA NA 4 3.58 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs12133923 3 ENSG00000200220 RNU6-179P 1 154012392 154012498 -1 snRNA 106479646 RNU6-179P NA NA 9 6.743 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs12133923 3 ENSG00000231837 RPS7P2 1 154051342 154052439 1 pseudogene 100270868 RPS7P2 NA NA 3 2.564 0 NA NA NA NA No NA NA rs12133923 3 ENSG00000263987 MIR5698 1 154076997 154077068 -1 miRNA 100847024 MIR5698 NA NA 4 7.965 0 NA NA NA NA No NA NA rs12133923 3 ENSG00000143549 TPM3 1 154127784 154167124 -1 protein_coding 7170 TPM3 0.191983984043152 -0.527201952 0 0 72 1.98723e-40 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood NA Yes Adult_Cortex:Fetal_Cortex 1.01391e-11 rs12133923 3 ENSG00000264384 RN7SL431P 1 154138723 154139025 -1 misc_RNA 106866913 RN7SL431P NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs12133923 3 ENSG00000215938 MIR190B 1 154166141 154166219 -1 miRNA 100126346 MIR190B NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs12133923 3 ENSG00000143612 C1orf43 1 154179182 154193104 -1 protein_coding 25912 C1orf43 0.173985957447014 -0.684900977 0 0 77 6.8895e-47 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg NA No NA 1.01391e-11 rs12133923 3 ENSG00000143569 UBAP2L 1 154192655 154243986 1 protein_coding 9898 UBAP2L 0.999999873126418 0.35646256 0 0 71 4.8757e-92 0 eQTLGen_cis_eQTLs NA No NA 1.01391e-11 rs12133923 3 ENSG00000252817 AL590431.1 1 154226921 154226997 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90 1.01391e-11 rs12133923 3 ENSG00000201129 SNORA58 1 154232203 154232338 1 snoRNA 109617023 SNORA58B NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90 1.01391e-11 rs12133923 3 ENSG00000143575 HAX1 1 154244987 154248351 1 protein_coding 10456 HAX1 1.10582340278236e-05 -0.2412109 0 0 14 4.1375e-09 3.23918113500907e-05 eQTLGen_cis_eQTLs NA No NA NA rs12133923 3 ENSG00000143595 AQP10 1 154293566 154297801 1 protein_coding 89872 AQP10 0.0152782932027765 -0.980404431 0 0 71 4.7468e-33 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes Promoter_anchored_loops 1.01391e-11 rs12133923 3 ENSG00000143515 ATP8B2 1 154298029 154323783 1 protein_coding 57198 ATP8B2 0.999564591733884 -0.493030255 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000163239 TDRD10 1 154474695 154520623 1 protein_coding 126668 TDRD10 2.45421655192587e-06 -0.428923944 0 0 4 1.38522e-06 0.0006880388 GTEx/v6/Adipose_Visceral_Omentum NA No NA NA rs12133923 3 ENSG00000160714 UBE2Q1 1 154521053 154531504 -1 protein_coding 55585 UBE2Q1 0.969363486984384 -0.5126963 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000233875 RP11-61L14.6 1 154551541 154552139 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex NA rs12133923 3 ENSG00000163344 PMVK 1 154897210 154909467 -1 protein_coding 10654 PMVK 0.000305454915643329 -0.527689982 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000270361 RP11-307C12.13 1 154909846 154910535 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000163346 PBXIP1 1 154916552 154928599 -1 protein_coding 57326 PBXIP1 5.79843921369484e-07 0.443722875 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs12133923 3 ENSG00000163348 PYGO2 1 154929502 154936329 -1 protein_coding 90780 PYGO2 0.923104365059159 -0.525257716 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs12133923 3 ENSG00000271380 RP11-307C12.12 1 154934301 154935099 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs12133923 3 ENSG00000132718 SYT11 1 155829300 155854990 1 protein_coding 23208 SYT11 0.801740134718319 -1.924430366 0 0 1 2.23139e-05 0.0221029 GTEx/v7/Cells_Transformed_fibroblasts NA No NA 3.95367e-11 rs2365715 4 ENSG00000196189 SEMA4A 1 156117157 156147543 1 protein_coding 64218 SEMA4A 0.615371620982326 -0.205497495 0 0 1 2.4642e-07 0.000796663969627186 eQTLGen_cis_eQTLs NA Yes Promoter_anchored_loops 3.95367e-11 rs2365715 4 ENSG00000160781 PAQR6 1 156213206 156217881 -1 protein_coding 79957 PAQR6 0.000721604365184446 -0.290453061 0 0 1 6.2412e-07 0.00198781463474675 eQTLGen_cis_eQTLs NA No NA 3.95367e-11 rs2365715 4 ENSG00000198952 SMG5 1 156219015 156252620 -1 protein_coding 23381 SMG5 0.998179752831908 -0.601125197 0 0 1 5.4315e-11 0 eQTLGen_cis_eQTLs NA No NA 3.95367e-11 rs2365715 4 ENSG00000198715 C1orf85 1 156259880 156265463 -1 protein_coding 112770 C1orf85 4.68709760252752e-08 0.200003517 0 0 1 1.3298e-15 0 eQTLGen_cis_eQTLs NA No NA 3.95367e-11 rs2365715 4 ENSG00000236947 RP11-98G7.1 1 156416204 156426369 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 3.95367e-11 rs2365715 4 ENSG00000187862 TTC24 1 156549519 156556562 1 protein_coding 164118 TTC24 6.58039647151808e-05 0.114085676 0 0 1 4.77e-37 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA 3.95367e-11 rs2365715 4 ENSG00000163382 APOA1BP 1 156561554 156564091 1 protein_coding 128240 APOA1BP 1.72708938017144e-06 0.413152862 0 0 1 4.2088e-18 0 eQTLGen_cis_eQTLs:xQTLServer_eQTLs:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Muscle_Skeletal:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Brain_Cortex NA No NA 3.95367e-11 rs2365715 4 ENSG00000272068 RP11-284F21.9 1 156607575 156610796 -1 lincRNA NA NA NA NA 1 21.8 0 NA NA NA NA No NA 3.95367e-11 rs2365715 4 ENSG00000132692 BCAN 1 156611182 156629324 1 protein_coding 63827 BCAN 0.00361212462845155 NA 1 21.8 1 2.40119e-09 1.57764e-05 GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Pituitary:GTEx/v7/Brain_Cortex NA No NA 3.95367e-11 rs2365715 4 ENSG00000272405 RP11-284F21.10 1 156611458 156614679 -1 antisense NA NA NA NA 1 21.8 0 NA NA NA NA No NA 3.95367e-11 rs2365715 4 ENSG00000229953 RP11-284F21.7 1 156616299 156631216 -1 antisense NA NA NA NA 1 21.8 0 NA NA NA NA No NA 3.95367e-11 rs2365715 4 ENSG00000132688 NES 1 156638555 156647189 -1 protein_coding 10763 NES 2.06955630735523e-05 -0.507845132 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 3.95367e-11 rs2365715 4 ENSG00000223356 RP11-66D17.5 1 156682004 156682966 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:IMR90 3.95367e-11 rs2365715:rs12133923 3:4 ENSG00000143319 ISG20L2 1 156691683 156698591 -1 protein_coding 81875 ISG20L2 0.821397244338996 -0.720864737 0 0 0 NA NA NA NA Yes IMR90 NA rs12133923 3 ENSG00000143303 RRNAD1 1 156698234 156706752 1 protein_coding 51093 RRNAD1 2.11535175142641e-08 -0.437664169 0 0 0 NA NA NA NA Yes IMR90 NA rs12133923 3 ENSG00000143314 MRPL24 1 156707095 156711382 -1 protein_coding 79590 MRPL24 0.00149122661138067 -0.055703152 0 0 0 NA NA NA NA Yes IMR90 NA rs12133923 3 ENSG00000266160 RN7SL612P 1 156955549 156955841 -1 misc_RNA 106479445 RN7SL612P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs12133923 3 ENSG00000158882 TOMM40L 1 161195793 161200408 1 protein_coding 84134 TOMM40L 0.744035828405772 -0.393456294 0 0 4 6.1432e-06 0.0391758436944938 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000230124 RP5-1180C10.2 1 180238788 180245359 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 5.37032e-14 rs6665134 5 ENSG00000135847 ACBD6 1 180244515 180472089 -1 protein_coding 84320 ACBD6 0.0649592587219742 -0.700233232 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.76247e-16 rs6665134 5 ENSG00000206905 Y_RNA 1 180488152 180488255 -1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.76247e-16 rs6665134 5 ENSG00000266683 AL358354.1 1 180514968 180515067 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.76247e-16 rs6665134 5 ENSG00000143324 XPR1 1 180601140 180859387 1 protein_coding 9213 XPR1 0.998119588301853 1.648241864 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 7.76247e-16 rs6665134 5 ENSG00000225857 RP11-46A10.2 1 180875787 180878302 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm 5.37032e-14 rs6665134 5 ENSG00000135835 KIAA1614 1 180882290 180920750 1 protein_coding 57710 KIAA1614 2.19336786808695e-13 1.262076767 0 0 39 1.07313e-12 9.9138e-09 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Nerve_Tibial:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Nerve_Tibial:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial NA Yes Adult_Cortex:Fetal_Cortex:Mesenchymal_Stem_Cell 7.76247e-16 rs6665134 5 ENSG00000243155 RP11-46A10.5 1 180913178 180945618 -1 antisense NA NA NA NA 24 19.39 37 8.99987e-21 0 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Artery_Tibial:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Artery_Tibial NA Yes IMR90:hESC 7.76247e-16 rs6665134 5 ENSG00000232586 RP11-46A10.4 1 180918835 180924023 -1 antisense 103344928 KIAA1614-AS1 NA NA 0 0 39 2.4811e-24 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood:GTEx/v7/Whole_Blood:GTEx/v6/Whole_Blood:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial NA Yes IMR90:hESC 7.76247e-16 rs6665134 5 ENSG00000251520 RP11-46A10.6 1 180933647 180935045 1 pseudogene NA NA NA NA 3 11.91 0 NA NA NA NA Yes IMR90:hESC 1.36458e-14 rs6665134 5 ENSG00000270711 RP11-46A10.8 1 180939973 180940383 1 pseudogene NA NA NA NA 12 16.49 0 NA NA NA NA Yes IMR90:hESC 7.76247e-16 rs6665134 5 ENSG00000234237 AL162431.1 1 180941695 180949868 1 protein_coding NA NA NA NA 34 19.39 0 NA NA NA NA Yes IMR90:hESC 7.76247e-16 rs6665134 5 ENSG00000135823 STX6 1 180941861 180992047 -1 protein_coding 10228 STX6 0.0198491170645574 -2.017748203 40 19.39 39 0 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/WHMT:GTEx/v8/Whole_Blood:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Substantia_nigra:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Substantia_nigra:GTEx/v6/Brain_Caudate_basal_ganglia NA Yes GM12878:IMR90:hESC 7.76247e-16 rs6665134 5 ENSG00000153029 MR1 1 181003067 181031074 1 protein_coding 3140 MR1 5.61258291225197e-09 3.571173289 1 1.141 38 8.4468e-38 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Muscle_Skeletal:GTEx/v7/Colon_Sigmoid NA Yes Adult_Cortex:Fetal_Cortex:GM12878:IMR90 7.76247e-16 rs6665134 5 ENSG00000162783 IER5 1 181057638 181059977 1 protein_coding 51278 IER5 0.666267931394036 -1.266094616 0 0 30 7.1455e-51 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes GM12878:IMR90 7.76247e-16 rs6665134 5 ENSG00000272198 RP11-309G3.3 1 181060245 181062035 1 lincRNA NA NA NA NA 0 0 19 3.07136e-06 0.000374402496519979 PsychENCODE_eQTLs NA Yes Adult_Cortex:Fetal_Cortex:GM12878:IMR90 7.76247e-16 rs6665134 5 ENSG00000237292 RP11-540K16.1 1 181143620 181151344 1 lincRNA 101928973 LINC01732 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.76247e-16 rs6665134 5 ENSG00000225359 RP11-540K16.2 1 181159607 181160285 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.76247e-16 rs6665134 5 ENSG00000198216 CACNA1E 1 181382238 181777219 1 protein_coding 777 CACNA1E 0.999999999999934 -0.119552968 0 0 0 NA NA NA NA Yes Mesendoderm 5.37032e-14 rs6665134 5 ENSG00000225982 RP11-538D16.3 1 182055686 182059247 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm 5.37032e-14 rs6665134 5 ENSG00000135824 RGS8 1 182615239 182653711 -1 protein_coding 85397 RGS8 0.520349598238871 -0.250472212 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 5.37032e-14 rs6665134 5 ENSG00000135829 DHX9 1 182808504 182856886 1 protein_coding 1660 DHX9 0.999999986154664 -0.648127276 0 0 0 NA NA NA NA Yes IMR90 5.37032e-14 rs6665134 5 ENSG00000117222 RBBP5 1 205055270 205091143 -1 protein_coding 5929 RBBP5 0.995054147429424 0.002660727 0 0 0 NA NA NA NA Yes Fetal_Cortex 2.41546e-11 rs113740521 6 ENSG00000117280 RAB7L1 1 205737114 205744588 -1 protein_coding 8934 RAB7L1 0.790354891047754 2.652801346 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 2.41546e-11 rs113740521 6 ENSG00000133065 SLC41A1 1 205758221 205782876 -1 protein_coding 254428 SLC41A1 0.705784064695467 -0.914640424 1 0.96 0 NA NA NA NA No NA 2.41546e-11 rs113740521 6 ENSG00000162877 PM20D1 1 205797150 205819260 -1 protein_coding 148811 PM20D1 1.26770298960659e-09 -0.420391671 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.41546e-11 rs113740521 6 ENSG00000174502 SLC26A9 1 205882176 205912588 -1 protein_coding 115019 SLC26A9 0.0029854587016256 0.763539174 0 0 0 NA NA NA NA Yes Adult_Cortex:Lung:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.41546e-11 rs113740521 6 ENSG00000227687 RP4-681L3.2 1 205904256 205904896 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Lung:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.41546e-11 rs113740521 6 ENSG00000226780 RP11-38J22.3 1 206214526 206223548 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.41546e-11 rs113740521 6 ENSG00000198049 AVPR1B 1 206223976 206231639 1 protein_coding 553 AVPR1B 2.82255376407223e-05 0.856862107 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.41546e-11 rs113740521 6 ENSG00000196533 C1orf186 1 206238872 206288647 -1 protein_coding 440712 C1orf186 0.00189512675148331 0.939176969 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.41546e-11 rs113740521 6 ENSG00000252692 SNORD60 1 206261008 206261093 -1 snoRNA 26788 SNORD60 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 2.41546e-11 rs113740521 6 ENSG00000240754 RP11-38J22.6 1 206288156 206306131 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.41546e-11 rs113740521 6 ENSG00000196188 CTSE 1 206317459 206332104 1 protein_coding 1510 CTSE 4.86866962963033e-07 1.110736735 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.41546e-11 rs113740521 6 ENSG00000237605 RP11-343H5.6 1 206807994 206808967 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex 2.41546e-11 rs113740521 6 ENSG00000143479 DYRK3 1 206808881 206857764 1 protein_coding 8444 DYRK3 0.000220921842662409 -0.114702048 0 0 0 NA NA NA NA Yes Fetal_Cortex 2.41546e-11 rs113740521 6 ENSG00000182795 C1orf116 1 207191866 207206101 -1 protein_coding 79098 C1orf116 0.371958031808421 -0.290447916 0 0 0 NA NA NA NA Yes Left_Ventricle 2.41546e-11 rs113740521 6 ENSG00000238401 snoU13 1 207212039 207212145 -1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle 2.41546e-11 rs113740521 6 ENSG00000180667 YOD1 1 207217194 207226325 -1 protein_coding 55432 YOD1 0.543401293595549 -0.12709038 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle 2.41546e-11 rs113740521 6 ENSG00000123836 PFKFB2 1 207222801 207254369 1 protein_coding 5208 PFKFB2 0.0010886274208406 -0.541608281 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle 2.41546e-11 rs113740521 6 ENSG00000119280 C1orf198 1 230972865 231005335 -1 protein_coding 84886 C1orf198 0.0273752757183558 0.038440822 0 0 18 3.1911e-10 2.03252032520325e-05 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000115758 ODC1 2 10580094 10588630 -1 protein_coding 4953 ODC1 0.950802102507626 NA 0 0 14 4.0974e-08 0.000581312916489437 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000018699 TTC27 2 32853099 33046118 1 protein_coding 55622 TTC27 6.54258241947822e-09 -0.569398575 0 0 1 8.8601e-07 0.00740740740740741 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000204822 MRPL53 2 74699085 74700449 -1 protein_coding 116540 MRPL53 0.222249430173565 -0.410211114 0 0 2 2.3102e-06 0.0173643542498089 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000153574 RPIA 2 88991162 89050452 1 protein_coding 22934 RPIA 0.00590911291307371 -0.494119335 0 0 3 2.0946e-08 0.000243531202435312 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000188177 ZC3H6 2 113033171 113097640 1 protein_coding 376940 ZC3H6 0.938245509196475 -3.337005631 0 0 3 NA 0.049 CMC_NoSVA_cis NA No NA 1.54525e-14 rs62158161 7 ENSG00000144136 SLC20A1 2 113403434 113421404 1 protein_coding 6574 SLC20A1 0.725656582615843 NA 0 0 22 6.3662e-13 0 eQTLGen_cis_eQTLs NA No NA 1.54525e-14 rs62158161 7 ENSG00000169607 CKAP2L 2 113493930 113522254 -1 protein_coding 150468 CKAP2L 0.218393604055394 1.590007364 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs62158161 7 ENSG00000115008 IL1A 2 113531492 113542167 -1 protein_coding 3552 IL1A 1.1235918506998e-05 -0.135007879 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs62158161 7 ENSG00000136696 IL36B 2 113779668 113810444 -1 protein_coding 27177 IL36B 0.00351729714336239 0.788246055 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 1.54525e-14 rs62158161 7 ENSG00000136695 IL36RN 2 113816215 113822959 1 protein_coding 26525 IL36RN 0.000972339640244069 2.764972523 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 1.54525e-14 rs62158161 7 ENSG00000136697 IL1F10 2 113825547 113833427 1 protein_coding 84639 IL1F10 0.0039602428583005 2.537467034 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 1.54525e-14 rs62158161 7 ENSG00000201805 RNU6-1180P 2 113844382 113844488 1 snRNA 106481552 RNU6-1180P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs62158161 7 ENSG00000136689 IL1RN 2 113864791 113891593 1 protein_coding 3557 IL1RN 0.340218948927042 1.185242545 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell NA rs62158161 7 ENSG00000125637 PSD4 2 113914902 113966973 1 protein_coding 23550 PSD4 0.805496070283155 -0.981757782 0 0 26 9.07521e-09 3.96633e-48 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Lung:GTEx/v7/Lung NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.54525e-14 rs62158161 7 ENSG00000189223 PAX8-AS1 2 113969099 114034158 1 processed_transcript 654433 PAX8-AS1 NA NA 0 0 25 5.203e-21 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Skin_Sun_Exposed_Lower_leg NA Yes Mesenchymal_Stem_Cell 1.54525e-14 rs62158161 7 ENSG00000125618 PAX8 2 113973574 114036527 -1 protein_coding 7849 PAX8 0.90212384293593 0.078698169 0 0 24 1.4711e-17 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Skin_Sun_Exposed_Lower_leg NA Yes Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.54525e-14 rs62158161 7 ENSG00000258395 RP11-65I12.1 2 113998307 113998987 1 antisense NA NA NA NA 0 0 9 3.9283e-07 0.000274296778357446 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Mesenchymal_Stem_Cell 1.54525e-14 rs62158161 7 ENSG00000231292 IGKV1OR2-108 2 114163973 114164486 1 IG_V_gene 28862 IGKV1OR2-108 NA NA 0 0 26 2.34126e-20 9.43461e-16 GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Thyroid:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Thyroid:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Thyroid NA No NA 1.54525e-14 rs62158161 7 ENSG00000234997 AC016745.3 2 114182072 114182901 1 antisense NA NA NA NA 0 0 26 4.89134e-72 2.06352e-62 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adrenal_Gland:GTEx/v8/Lung:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Adrenal_Gland:GTEx/v7/Lung:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid:GTEx/v6/Adrenal_Gland:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops 1.54525e-14 rs62158161 7 ENSG00000272563 RP11-480C16.1 2 114190177 114193619 1 lincRNA NA NA NA NA 0 0 25 2.08685e-60 2.5236e-51 GTEx/v8/Adrenal_Gland:GTEx/v8/Lung:GTEx/v8/Pituitary:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Adrenal_Gland:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Lung:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid NA Yes Promoter_anchored_loops 1.54525e-14 rs62158161 7 ENSG00000136682 CBWD2 2 114195268 114253766 1 protein_coding 150472 CBWD2 0.967070795623724 -0.830177193 0 0 26 1.08686e-22 9.5553e-18 GTEx/v8/Adrenal_Gland:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Muscle_Skeletal:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Adrenal_Gland:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Thyroid:GTEx/v6/Thyroid NA No NA 1.54525e-14 rs62158161 7 ENSG00000184492 FOXD4L1 2 114256661 114258728 1 protein_coding 200350 FOXD4L1 NA 0.335377875 0 0 26 4.69547e-18 1.0442e-13 GTEx/v8/Adrenal_Gland:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Thyroid:GTEx/v7/Lung:GTEx/v7/Thyroid:GTEx/v6/Thyroid NA No NA 1.54525e-14 rs62158161 7 ENSG00000226516 FAM138B 2 114334959 114336429 1 lincRNA 654412 FAM138B NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs62158161 7 ENSG00000146556 WASH2P 2 114341664 114356655 1 pseudogene 375260 WASH2P NA NA 0 0 2 4.5209e-05 4.6933e-18 GTEx/v7/Artery_Tibial NA No NA NA rs62158161 7 ENSG00000236397 DDX11L2 2 114356606 114359144 -1 pseudogene 84771 DDX11L2 NA NA 0 0 16 2.6424e-09 2.6023030381888e-05 eQTLGen_cis_eQTLs NA No NA NA rs62158161 7 ENSG00000240356 RPL23AP7 2 114368079 114384667 -1 pseudogene 118433 RPL23AP7 NA NA 0 0 24 1.8869e-12 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:GTEx/v8/Artery_Tibial:GTEx/v8/Lung:GTEx/v7/Esophagus_Mucosa NA No NA 1.54525e-14 rs62158161 7 ENSG00000144158 RP11-395L14.17 2 114415485 114416252 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs62158161 7 ENSG00000270019 RP11-141B14.1 2 114645780 114647327 -1 lincRNA NA NA NA NA 0 0 2 9.40545e-06 0.00623282 GTEx/v8/Brain_Cortex:GTEx/v7/Brain_Cortex NA No NA 1.54525e-14 rs62158161 7 ENSG00000234199 AC010982.1 2 114737146 114764879 1 lincRNA 440900 LINC01191 NA NA 0 0 21 6.3875e-08 0.000277690123067214 eQTLGen_cis_eQTLs NA No NA 1.54525e-14 rs62158161 7 ENSG00000128656 CHN1 2 175664091 175870097 -1 protein_coding 1123 CHN1 0.837424430279943 NA 0 0 1 3.6993e-06 0.025808214899266 eQTLGen_trans_eQTLs NA No NA NA rs34000805 59 ENSG00000163012 ZSWIM2 2 187692562 187713935 -1 protein_coding 151112 ZSWIM2 5.13768966981789e-10 -0.004683635 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs151052089 8 ENSG00000226553 AC018735.1 2 187866603 187868104 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs151052089 8 ENSG00000224063 AC007319.1 2 187867947 188419390 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs151052089 8 ENSG00000222845 RN7SKP42 2 187987289 187987588 -1 misc_RNA 106480846 RN7SKP42 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.83443e-08 rs151052089 8 ENSG00000199626 RNU6-989P 2 188135425 188135531 -1 snRNA 106481492 RNU6-989P NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs151052089 8 ENSG00000064989 CALCRL 2 188207856 188313187 -1 protein_coding 10203 CALCRL 0.926324873613011 0.904925193 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs151052089 8 ENSG00000231739 GAPDHP59 2 188280279 188280545 1 pseudogene 645024 GAPDHP59 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs151052089 8 ENSG00000003436 TFPI 2 188328957 188430487 -1 protein_coding 7035 TFPI 0.0253229555895134 -0.447553866 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90 NA rs151052089 8 ENSG00000252004 AC068718.1 2 188607314 188607401 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs151052089 8 ENSG00000235616 ST13P2 2 188690068 188691176 1 pseudogene 344328 ST13P2 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs151052089 8 ENSG00000207951 MIR561 2 189162219 189162315 1 miRNA 693146 MIR561 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs151052089 8 ENSG00000223523 AC079613.1 2 189463518 189704171 -1 sense_overlapping NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs151052089 8 ENSG00000221502 MIR1245A 2 189842818 189842887 1 miRNA 100302219 MIR1245A NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell NA rs151052089 8 ENSG00000228073 AC133106.2 2 189959789 189960884 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs151052089 8 ENSG00000115368 WDR75 2 190306159 190340291 1 protein_coding 84128 WDR75 0.566494633877436 -0.080266309 0 0 38 6.9771e-07 0.00219462715927952 eQTLGen_cis_eQTLs NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs151052089 8 ENSG00000233996 AC013439.4 2 190351206 190352718 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.83443e-08 rs151052089 8 ENSG00000138449 SLC40A1 2 190425305 190448484 -1 protein_coding 30061 SLC40A1 0.977595134539298 -0.038223761 0 0 74 8.4848e-16 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.83443e-08 rs151052089 8 ENSG00000138381 ASNSD1 2 190526111 190535557 1 protein_coding 54529 ASNSD1 1.63756463401646e-08 -0.044258206 9 5.798 99 0 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/T_CD4_TFH:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adrenal_Gland:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Pituitary:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Stomach:GTEx/v6/Thyroid NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000151687 ANKAR 2 190539016 190625919 1 protein_coding 150709 ANKAR 6.6124241759396e-24 0.026930536 52 13.23 82 2.5993e-07 0.000623390605825671 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:CMC_SVA_cis:GTEx/v8/Brain_Cerebellum:GTEx/v8/Heart_Left_Ventricle NA Yes Promoter_anchored_loops:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000128694 OSGEPL1 2 190611386 190627953 -1 protein_coding 64172 OSGEPL1 0.000202433816403507 0.235518813 25 9.922 58 4.24524e-06 0.00233024 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Tibial:GTEx/v8/Thyroid NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000223249 Y_RNA 2 190618190 190618285 1 misc_RNA NA NA NA NA 11 9.922 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000253559 OSGEPL1-AS1 2 190627430 190630282 1 antisense 101409258 OSGEPL1-AS1 NA NA 14 9.922 91 1.698e-20 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Aorta:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000273240 RP11-455J20.3 2 190628585 190629182 -1 antisense NA NA NA NA 13 9.922 91 5.57713e-17 6.85435e-18 PsychENCODE_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Liver:GTEx/v7/Ovary:GTEx/v7/Pituitary:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Thyroid:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Ovary NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000128699 ORMDL1 2 190635049 190649097 -1 protein_coding 94101 ORMDL1 0.0758238996219523 0.613065832 16 13.04 92 1.37025e-94 0 DICE/Monocyte_classical:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000231145 AC013468.1 2 190642909 190643157 -1 protein_coding NA NA NA NA 10 13.04 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000064933 PMS1 2 190649107 190742355 1 protein_coding 5378 PMS1 6.56457792406353e-14 -0.296355252 36 13.04 96 4.964e-236 0 PsychENCODE_eQTLs:DICE/Monocyte_non_classical:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH2:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellum:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Tibial:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pancreas:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000187699 C2orf88 2 190744335 191068210 1 protein_coding 84281 C2orf88 0.023588526845881 -0.923406716 3 6.449 3 1.4132e-05 0.0394545346979826 eQTLGen_cis_eQTLs NA Yes Aorta:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.83443e-08 rs151052089 8 ENSG00000238641 AC008122.1 2 190749490 190749579 1 miRNA NA NA NA NA 1 6.449 0 NA NA NA NA Yes Aorta:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.83443e-08 rs151052089 8 ENSG00000223824 AC019178.3 2 190781980 190782484 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.83443e-08 rs151052089 8 ENSG00000204253 HNRNPCP2 2 190788062 190788942 1 pseudogene 653447 HNRNPCP2 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.83443e-08 rs151052089 8 ENSG00000213110 AC019178.2 2 190795003 190795736 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.83443e-08 rs151052089 8 ENSG00000138379 MSTN 2 190920423 190927455 -1 protein_coding 2660 MSTN 0.812914735546533 0.579199625 0 0 3 1.77869e-06 0.019125182 GTEx/v6/Spleen NA Yes Adult_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.83443e-08 rs151052089 8 ENSG00000198130 HIBCH 2 191054461 191208919 -1 protein_coding 26275 HIBCH 4.18223751191075e-08 -0.049260935 0 0 26 7.6087e-06 1.65361e-18 eQTLGen_cis_eQTLs:GTEx/v8/Whole_Blood:GTEx/v7/Whole_Blood NA Yes Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000151689 INPP1 2 191208196 191236391 1 protein_coding 3628 INPP1 0.000237351689203819 NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000151690 MFSD6 2 191273081 191373931 1 protein_coding 54842 MFSD6 0.00184669369540055 -0.109788961 0 0 40 3.8543e-08 0.00015852885225111 eQTLGen_cis_eQTLs NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell 1.83443e-08 rs151052089 8 ENSG00000272979 RP11-647K16.1 2 191318818 191319247 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:IMR90:Mesenchymal_Stem_Cell NA rs151052089 8 ENSG00000189362 TMEM194B 2 191369068 191399448 -1 protein_coding 100131211 TMEM194B NA -0.209501936 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000233654 AC093388.3 2 191399581 191432828 1 antisense NA NA NA NA 0 0 2 0.000273187 0.0157636 GTEx/v8/Skin_Sun_Exposed_Lower_leg NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000251935 RN7SKP179 2 191417990 191418206 -1 misc_RNA 106481815 RN7SKP179 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000138386 NAB1 2 191511472 191557492 1 protein_coding 4664 NAB1 0.84850840841026 -1.336164452 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000228509 AC006460.2 2 191541670 191573442 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.83443e-08 rs151052089 8 ENSG00000235852 AC005540.3 2 191745523 191746785 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000115419 GLS 2 191745553 191830278 1 protein_coding 2744 GLS 0.999302599696976 -0.16300407 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000115415 STAT1 2 191829084 191885686 -1 protein_coding 6772 STAT1 0.999994277113306 -0.650494499 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90 NA rs151052089 8 ENSG00000229023 AC067945.3 2 191857365 191858293 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesendoderm:hESC 1.83443e-08 rs151052089 8 ENSG00000230686 AC067945.2 2 191882680 191883805 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90 NA rs151052089 8 ENSG00000231858 AC067945.4 2 191886252 191897040 1 processed_transcript 105373805 LOC105373805 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90 NA rs151052089 8 ENSG00000232485 AC098820.3 2 217343753 217363484 -1 processed_transcript NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm 7.93963e-09 rs6435948 9 ENSG00000197756 RPL37A 2 217362912 217443903 1 protein_coding 6168 RPL37A 0.00477076544447004 1.39404793 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm 7.93963e-09 rs6435948 9 ENSG00000115461 IGFBP5 2 217536828 217560248 -1 protein_coding 3488 IGFBP5 0.859978350463281 0.680116645 0 0 0 NA NA NA NA Yes Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs6435948 9 ENSG00000236886 AC007563.5 2 217559187 217858802 1 antisense NA NA NA NA 14 10.29 0 NA NA NA NA No NA 7.93963e-09 rs6435948 9 ENSG00000237930 AC007563.4 2 217650497 217650867 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000222832 RNA5SP120 2 217658212 217658323 -1 rRNA 100873390 RNA5SP120 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000229352 AC007563.3 2 217664331 217670058 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000234588 FABP5P14 2 217670460 217670852 -1 pseudogene 100873957 FABP5P14 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000231597 AC007557.4 2 217719112 217719855 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000118245 TNP1 2 217724181 217724787 -1 protein_coding 7141 TNP1 0.222164609123562 -0.303943522 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000237479 AC007557.2 2 217731055 217732536 -1 antisense 105373876 LOC105373876 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000227021 AC007557.3 2 217732735 217733879 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000236295 AC007563.1 2 217735164 217738655 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000223874 AC007557.1 2 217735495 217736362 1 protein_coding 101928327 LINC01921 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000259855 RP11-574O16.1 2 217860629 217861213 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell 7.93963e-09 rs6435948 9 ENSG00000251849 AC010887.1 2 218041221 218041305 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Bladder:Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000251982 RN7SKP43 2 218116279 218116598 1 misc_RNA 106481806 RN7SKP43 NA NA 0 0 0 NA NA NA NA Yes Bladder:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000233143 AC009492.1 2 218147462 218200843 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000231672 DIRC3 2 218148742 218621316 -1 protein_coding 729582 DIRC3 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000224414 AC010886.2 2 218558618 218561486 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Psoas:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000231035 RPL7L1P9 2 218625270 218626014 -1 pseudogene 100128899 RPL7L1P9 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000256309 AC009469.1 2 218664514 218665979 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.93963e-09 rs6435948 9 ENSG00000188282 RUFY4 2 218899683 218955304 1 protein_coding 285180 RUFY4 4.87589210961602e-09 NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 7.93963e-09 rs6435948 9 ENSG00000229754 CXCR2P1 2 218923878 218930452 -1 pseudogene 3580 CXCR2P1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 7.93963e-09 rs6435948 9 ENSG00000180871 CXCR2 2 218990012 219001976 1 protein_coding 3579 CXCR2 0.405284397129407 0.348079597 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 7.93963e-09 rs6435948 9 ENSG00000163464 CXCR1 2 219027568 219031718 -1 protein_coding 3577 CXCR1 0.000374556416932971 -0.032229305 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 7.93963e-09 rs6435948 9 ENSG00000238428 snoU13 2 219049702 219049805 -1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 7.93963e-09 rs6435948 9 ENSG00000224159 HMGB1P9 2 219065157 219066111 1 pseudogene 654503 HMGB1P9 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 7.93963e-09 rs6435948 9 ENSG00000163466 ARPC2 2 219081817 219119079 1 protein_coding 10109 ARPC2 NA NA 0 0 0 NA NA NA NA Yes IMR90 7.93963e-09 rs6435948 9 ENSG00000261338 RP11-378A13.1 2 219120042 219122087 1 sense_overlapping NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 7.93963e-09 rs6435948 9 ENSG00000144711 IQSEC1 3 12938719 13114617 -1 protein_coding 9922 IQSEC1 0.998506226942054 -0.5017581 0 0 3 6.94015e-06 0.0314229 GTEx/v7/Brain_Caudate_basal_ganglia NA No NA 8.01678e-11 rs6442411 10 ENSG00000154764 WNT7A 3 13857755 13921618 -1 protein_coding 7476 WNT7A 0.441260494800712 1.728691268 0 0 7 1.1123e-09 6.1267001592942e-06 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Substantia_nigra:GTEx/v7/Brain_Substantia_nigra NA No NA 8.01678e-11 rs6442411 10 ENSG00000154767 XPC 3 14186647 14220283 -1 protein_coding 7508 XPC 1.31713341793089e-10 0.190840625 0 0 3 8.35448e-06 0.0425712 GTEx/v7/Breast_Mammary_Tissue NA No NA NA rs6442411 10 ENSG00000114784 EIF1B 3 40351175 40353915 1 protein_coding 10289 EIF1B 0.394740519246042 0.121609905 0 0 2 1.5093e-06 0.0117422173675587 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000041880 PARP3 3 51976361 51982883 1 protein_coding 10039 PARP3 1.48672469453256e-08 -0.379739945 0 0 16 1.6769e-07 0.0016597510373444 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000113971 NPHP3 3 132276986 132441303 -1 protein_coding 27031 NPHP3 1.41114914876655e-09 NA 0 0 0 NA NA NA NA Yes IMR90 1.79887e-26 rs4428180 11 ENSG00000248724 NPHP3-AS1 3 132440594 132593067 1 antisense 348808 NPHP3-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90 1.79887e-26 rs4428180 11 ENSG00000250355 RP11-79L21.1 3 132575913 132576068 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 1.79887e-26 rs4428180 11 ENSG00000091527 CDV3 3 133292574 133309105 1 protein_coding 55573 CDV3 0.201907143848833 -0.203864817 0 0 4 2.3039e-33 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood NA No NA 1.79887e-26 rs4428180 11 ENSG00000163781 TOPBP1 3 133317019 133380737 -1 protein_coding 11073 TOPBP1 0.999999933511461 -0.824794396 0 0 4 5.6102e-08 0.000240096038415366 eQTLGen_cis_eQTLs NA Yes Liver 1.79887e-26 rs4428180 11 ENSG00000242337 TFP1 3 133380842 133473420 1 pseudogene 100129696 TFP1 NA NA 4 4.492 1 1.61029e-05 0.00031223948 GTEx/v6/Esophagus_Mucosa NA Yes Liver 1.79887e-26 rs4428180 11 ENSG00000252641 RNU6-678P 3 133383779 133383878 1 snRNA 106479865 RNU6-678P NA NA 0 0 0 NA NA NA NA Yes Liver 1.79887e-26 rs4428180 11 ENSG00000091513 TF 3 133464800 133497850 1 protein_coding 7018 TF 0.00237226565881044 0.299829795 4 4.492 4 4.8974e-09 6.65265e-102 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Esophagus_Mucosa:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Esophagus_Mucosa NA No NA 1.79887e-26 rs4428180 11 ENSG00000244062 RP11-404G16.2 3 133479144 133481207 1 pseudogene NA NA NA NA 0 0 1 2.61673e-05 3.60952e-34 GTEx/v8/Esophagus_Mucosa:GTEx/v7/Esophagus_Mucosa NA No NA 1.79887e-26 rs4428180 11 ENSG00000144867 SRPRB 3 133502877 133544616 1 protein_coding 58477 SRPRB 0.0107906261312511 -1.330276479 0 0 4 3.0296e-06 8.00474e-24 eQTLGen_cis_eQTLs:GTEx/v8/Skin_Sun_Exposed_Lower_leg NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.79887e-26 rs4428180 11 ENSG00000120756 PLS1 3 142315229 142432506 1 protein_coding 5357 PLS1 0.000310388416470486 -0.114066648 0 0 1 4.4966e-06 0.0301410150064098 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000240095 RP11-88H10.3 3 145679542 145681410 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm 1.84502e-11 rs2279829 12 ENSG00000261051 RP11-274H2.5 3 145777372 145779466 -1 sense_overlapping NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm 1.84502e-11 rs2279829 12 ENSG00000243415 RP11-274H2.2 3 145781829 145822991 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm 1.84502e-11 rs2279829 12 ENSG00000232013 AC107021.1 3 145782358 145784156 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm 1.84502e-11 rs2279829 12 ENSG00000240032 RP11-274H2.3 3 145784131 145786972 -1 antisense 109729161 LNCSRLR NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm 1.84502e-11 rs2279829 12 ENSG00000152952 PLOD2 3 145787227 145881440 -1 protein_coding 5352 PLOD2 0.00117484049993417 -0.181734879 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000114698 PLSCR4 3 145910126 145968966 -1 protein_coding 57088 PLSCR4 0.00169240896275056 0.192184036 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesendoderm 1.84502e-11 rs2279829 12 ENSG00000188313 PLSCR1 3 146232967 146262651 -1 protein_coding 5359 PLSCR1 0.00293164530943767 -0.02597422 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.84502e-11 rs2279829 12 ENSG00000243620 RP11-649A16.1 3 146627472 147088443 -1 antisense NA NA NA NA 1 5.373 0 NA NA NA NA Yes Fetal_Cortex:Pancreas:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000242671 RP11-232M24.1 3 146639710 146643005 1 lincRNA 101927866 LINC02010 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.84502e-11 rs2279829 12 ENSG00000251800 U3 3 146671746 146671865 -1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.84502e-11 rs2279829 12 ENSG00000207156 RNU6-505P 3 146714394 146714500 -1 snRNA 106479790 RNU6-505P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.84502e-11 rs2279829 12 ENSG00000239412 RPL21P71 3 146994555 146995039 1 pseudogene 729962 RPL21P71 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000174963 ZIC4 3 147103833 147124647 -1 protein_coding 84107 ZIC4 0.00181690392137032 -1.434066564 3 21.8 4 7.29365e-08 1.18818457057423e-05 PsychENCODE_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Muscle_Skeletal:GTEx/v8/Cells_Cultured_fibroblasts NA Yes Fetal_Cortex:Pancreas:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000241202 ZIC4-AS1 3 147104754 147105240 1 antisense 100873950 ZIC4-AS1 NA NA 2 21.8 0 NA NA NA NA Yes Fetal_Cortex:Pancreas:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000152977 ZIC1 3 147111209 147228080 1 protein_coding 7545 ZIC1 0.825224393438112 -1.664163979 3 21.8 1 5.85136e-05 0.0482443 GTEx/v8/Testis NA Yes Fetal_Cortex:Pancreas:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000240804 NPM1P28 3 147308783 147309622 -1 pseudogene 646849 NPM1P28 NA NA 0 0 0 NA NA NA NA Yes Aorta:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000239661 RP11-78O22.1 3 147561910 147564444 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000221431 AC092925.1 3 147629193 147629288 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000239922 RP11-71N10.1 3 147657791 147724542 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Hippocampus:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000241131 RP11-639B1.1 3 147795946 147805816 1 lincRNA 100507461 LINC02032 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000221457 AC092958.1 3 147798620 147798709 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000241792 RP11-501O2.1 3 147810962 147845020 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000244650 RP11-501O2.3 3 147878698 147944393 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000205412 HNRNPA1P20 3 147884131 147885085 -1 pseudogene 344741 HNRNPA1P20 NA NA 0 0 0 NA NA NA NA Yes Neural_Progenitor_Cell 1.84502e-11 rs2279829 12 ENSG00000243347 RP11-501O2.4 3 147913516 147997885 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000242440 RP11-501O2.5 3 147998678 148117743 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000241993 RPL38P1 3 148413781 148413991 -1 pseudogene 116809 RPL38P1 NA NA 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000144891 AGTR1 3 148415571 148460795 1 protein_coding 185 AGTR1 0.00727625074022701 0.680424291 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000153002 CPB1 3 148508889 148577974 1 protein_coding 1360 CPB1 2.26972023407954e-14 0.029035635 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell 1.84502e-11 rs2279829 12 ENSG00000244089 HMGB1P30 3 148542569 148543174 -1 pseudogene 100873893 HMGB1P30 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.84502e-11 rs2279829 12 ENSG00000240521 RP11-680B3.2 3 148568720 148677899 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Neural_Progenitor_Cell 1.84502e-11 rs2279829 12 ENSG00000163751 CPA3 3 148583043 148614983 1 protein_coding 1359 CPA3 1.2834341428345e-12 0.024941405 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.84502e-11 rs2279829 12 ENSG00000241627 UBQLN4P1 3 148703655 148705455 -1 pseudogene 285329 UBQLN4P1 NA NA 0 0 0 NA NA NA NA Yes hESC 1.84502e-11 rs2279829 12 ENSG00000163754 GYG1 3 148709128 148745419 1 protein_coding 2992 GYG1 6.90635734321028e-07 -0.198614794 0 0 0 NA NA NA NA Yes hESC 1.84502e-11 rs2279829 12 ENSG00000071794 HLTF 3 148747914 148804341 -1 protein_coding 6596 HLTF 6.80799092701924e-20 -0.592608608 0 0 0 NA NA NA NA Yes Mesendoderm:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000239718 HLTF-AS1 3 148804119 148820610 1 antisense 100873945 HLTF-AS1 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000201031 Y_RNA 3 148812140 148812249 -1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000240511 MED28P2 3 148817286 148817602 -1 pseudogene 106480445 MED28P2 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:Trophoblast-like_Cell:hESC 1.84502e-11 rs2279829 12 ENSG00000163762 TM4SF18 3 149036285 149052201 -1 protein_coding 116441 TM4SF18 2.10380518922091e-07 1.605020272 0 0 0 NA NA NA NA Yes hESC 1.84502e-11 rs2279829 12 ENSG00000243822 RP11-2G17.1 3 149074956 149075332 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes hESC 1.84502e-11 rs2279829 12 ENSG00000241985 WWTR1-IT1 3 149366784 149367971 -1 sense_intronic 106478977 WWTR1-IT1 NA NA 0 0 0 NA NA NA NA Yes hESC 1.84502e-11 rs2279829 12 ENSG00000241313 WWTR1-AS1 3 149374807 149379151 1 antisense 100128025 WWTR1-AS1 NA NA 0 0 0 NA NA NA NA Yes hESC 1.84502e-11 rs2279829 12 ENSG00000252172 RNU6-720P 3 149635129 149635236 -1 snRNA 106479885 RNU6-720P NA NA 0 0 0 NA NA NA NA Yes hESC 1.84502e-11 rs2279829 12 ENSG00000181788 SIAH2 3 150458914 150481264 -1 protein_coding 6478 SIAH2 0.360182186098013 NA 0 0 3 1.1126e-13 0 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000073282 TP63 3 189349205 189615068 1 protein_coding 8626 TP63 0.983222202403613 -0.204818685 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs150434736 13 ENSG00000090530 LEPREL1 3 189674517 189840226 -1 protein_coding 55214 LEPREL1 6.48633510490974e-10 -0.801421713 0 0 0 NA NA NA NA Yes hESC NA rs150434736 13 ENSG00000230077 MTAPP2 3 189686819 189687650 -1 pseudogene 100420621 MTAPP2 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs150434736 13 ENSG00000265045 RN7SL486P 3 189831723 189832061 1 misc_RNA NA RN7SL486P NA NA 0 0 0 NA NA NA NA Yes hESC NA rs150434736 13 ENSG00000225764 LEPREL1-AS1 3 189838753 189862635 1 antisense 101929152 LEPREL1-AS1 NA NA 0 0 0 NA NA NA NA Yes hESC NA rs150434736 13 ENSG00000163347 CLDN1 3 190023490 190040264 -1 protein_coding 9076 CLDN1 0.0581349308262247 3.068261867 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs150434736 13 ENSG00000198398 TMEM207 3 190146444 190167665 -1 protein_coding 131920 TMEM207 0.000192958975824054 -0.08402702 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs150434736 13 ENSG00000196083 IL1RAP 3 190231840 190375843 1 protein_coding 3556 IL1RAP 0.506746749056946 -0.498078165 0 0 0 NA NA NA NA Yes IMR90:hESC NA rs150434736 13 ENSG00000273370 RP11-268E23.2 3 190377005 190377539 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs150434736 13 ENSG00000228730 RP11-95L3.2 3 190415712 190416637 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.26987e-10 rs150434736 13 ENSG00000232610 CCT6P4 3 190432600 190434188 1 pseudogene 100130481 CCT6P4 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.26987e-10 rs150434736 13 ENSG00000214147 RP11-332P22.2 3 190548754 190549962 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.26987e-10 rs150434736 13 ENSG00000205835 GMNC 3 190570666 190610218 -1 protein_coding 647309 GMNC NA 1.10405959 19 12.4 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.26987e-10 rs150434736 13 ENSG00000188729 OSTN 3 190917030 190983404 1 protein_coding 344901 OSTN 0.0858560507076122 0.073378608 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs150434736 13 ENSG00000233308 OSTN-AS1 3 190931080 190952394 -1 antisense 106480738 OSTN-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm NA rs150434736 13 ENSG00000188958 UTS2B 3 190984957 191048325 -1 protein_coding 257313 UTS2B 0.0110399911903071 3.892491024 0 0 0 NA NA NA NA Yes IMR90 5.26987e-10 rs150434736 13 ENSG00000152492 CCDC50 3 191046866 191116459 1 protein_coding 152137 CCDC50 9.33289305733199e-06 0.107292874 0 0 0 NA NA NA NA Yes IMR90 5.26987e-10 rs150434736 13 ENSG00000253548 PYDC2 3 191178952 191179245 1 protein_coding 152138 PYDC2 0.0221705221528128 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000223812 RP11-197K6.1 3 191275113 191308145 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs150434736 13 ENSG00000201860 Y_RNA 3 191358924 191359026 1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000200270 Y_RNA 3 191359118 191359213 -1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000237653 RP11-655G22.2 3 191670138 191670615 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.26987e-10 rs150434736 13 ENSG00000216020 AC026320.1 3 191693743 191693813 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.26987e-10 rs150434736 13 ENSG00000232353 RP11-655G22.1 3 191747669 191754346 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.26987e-10 rs150434736 13 ENSG00000222583 RN7SKP222 3 191810911 191811225 1 misc_RNA 106479193 RN7SKP222 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000114279 FGF12 3 191857184 192485553 -1 protein_coding 2257 FGF12 0.114210585344935 0.094505286 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm 5.26987e-10 rs150434736 13 ENSG00000231383 FGF12-AS1 3 191955826 192000886 1 antisense 100873986 FGF12-AS1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.26987e-10 rs150434736 13 ENSG00000230126 FGF12-AS2 3 192232811 192234362 1 antisense 100873987 FGF12-AS2 NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 5.26987e-10 rs150434736 13 ENSG00000226709 FGF12-AS3 3 192234620 192239187 1 antisense 100873988 FGF12-AS3 NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 5.26987e-10 rs150434736 13 ENSG00000238902 snoU13 3 192251798 192251901 -1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000236229 VEZF1P1 3 192873245 192874997 -1 pseudogene 647319 VEZF1P1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000187527 ATP13A5 3 192992579 193096632 -1 protein_coding 344905 ATP13A5 6.22871619777347e-28 0.053944977 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000236508 ATP13A5-AS1 3 193025033 193032151 1 antisense 100874218 ATP13A5-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000127249 ATP13A4 3 193119866 193310900 -1 protein_coding 84239 ATP13A4 6.07648654021509e-10 -0.117592511 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000225473 ATP13A4-AS1 3 193271002 193272877 1 antisense 101929198 ATP13A4-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000236297 RP11-175P19.2 3 193296601 193310879 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000198836 OPA1 3 193310933 193415612 1 protein_coding 4976 OPA1 0.994351455893758 -0.552454984 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.26987e-10 rs150434736 13 ENSG00000229155 RP11-528A4.2 3 193560349 193561813 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs150434736 13 ENSG00000138767 CNOT6L 4 78634541 78740769 -1 protein_coding 246175 CNOT6L 0.954497484149675 -1.011875186 0 0 1 5.8539e-06 0.0376200716845878 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000248676 RP11-766F14.1 4 100515956 100547070 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 7.7983e-14 rs13107325 14 ENSG00000070190 DAPP1 4 100737990 100791311 1 protein_coding 27071 DAPP1 0.183493679964267 0.348165148 0 0 0 NA NA NA NA Yes IMR90 7.7983e-14 rs13107325 14 ENSG00000164031 DNAJB14 4 100817405 100867883 -1 protein_coding 79982 DNAJB14 0.956254969811075 -1.302773206 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 7.7983e-14 rs13107325 14 ENSG00000164032 H2AFZ 4 100869243 100871545 -1 protein_coding 3015 H2AFZ 0.855327138804775 -0.788650432 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 7.7983e-14 rs13107325 14 ENSG00000245322 RP11-15B17.1 4 100871163 101116256 1 antisense 256880 LOC256880 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 7.7983e-14 rs13107325 14 ENSG00000250403 RP11-15B17.2 4 100911894 100912634 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell 7.7983e-14 rs13107325 14 ENSG00000248820 RP11-15B17.3 4 100962998 100963261 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell 7.7983e-14 rs13107325 14 ENSG00000222196 AC121157.1 4 101051102 101051192 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 7.7983e-14 rs13107325 14 ENSG00000145358 DDIT4L 4 101107027 101111939 -1 protein_coding 115265 DDIT4L 0.000548864407256177 3.322202451 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000249710 RP11-588P8.1 4 101111190 101136662 1 antisense 101929353 LOC101929353 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000164035 EMCN 4 101316498 101801283 -1 protein_coding 51705 EMCN 1.65285025326724e-05 1.556795351 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000250223 EMCN-IT3 4 101581436 101596270 -1 sense_intronic 100874275 EMCN-IT3 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000251219 EMCN-IT2 4 101699739 101712392 -1 sense_intronic 100874276 EMCN-IT2 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.7983e-14 rs13107325 14 ENSG00000251636 EMCN-IT1 4 101733412 101735437 -1 sense_intronic 107986233 EMCN-IT1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000138814 PPP3CA 4 101944566 102269435 -1 protein_coding 5530 PPP3CA 0.998148788702111 -0.848066086 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000221265 MIR1255A 4 102251459 102251571 -1 miRNA 100302193 MIR1255A NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000254531 AP001816.1 4 102268937 102270040 1 protein_coding 90024 FLJ20021 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000153064 BANK1 4 102332443 102995969 1 protein_coding 55024 BANK1 1.76433043896144e-10 -0.305250663 1 1.848 0 NA NA NA NA Yes Aorta:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000199529 RNU6-462P 4 102645033 102645137 1 snRNA 106479770 RNU6-462P NA NA 0 0 0 NA NA NA NA Yes Aorta:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000251149 MTND5P5 4 102893580 102893955 1 pseudogene 100873201 MTND5P5 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000251309 RP11-498M5.2 4 102898051 102958060 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.7983e-14 rs13107325 14 ENSG00000138821 SLC39A8 4 103172198 103352415 -1 protein_coding 64116 SLC39A8 0.891567478844834 -0.202749369 2 23.1 5 2.9081e-10 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs NA No NA 7.7983e-14 rs13107325 14 ENSG00000238553 AF213884.3 4 103487032 103487124 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000109332 UBE2D3 4 103715540 103790053 -1 protein_coding 7323 UBE2D3 0.748203020257397 NA 0 0 4 2.66979e-06 0.00163825 GTEx/v8/Artery_Aorta NA No NA 7.7983e-14 rs13107325 14 ENSG00000164037 SLC9B1 4 103806205 103940896 -1 protein_coding 150159 SLC9B1 8.48795187528449e-05 -0.347278811 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesendoderm:Trophoblast-like_Cell:hESC 7.7983e-14 rs13107325 14 ENSG00000249283 ACTR3BP4 4 103883113 103884484 1 pseudogene 777774 ACTR3BP4 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:hESC 7.7983e-14 rs13107325 14 ENSG00000164038 SLC9B2 4 103941025 104006986 -1 protein_coding 133308 SLC9B2 0.067056661977643 -1.384288763 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell 7.7983e-14 rs13107325 14 ENSG00000164039 BDH2 4 104000592 104021040 -1 protein_coding 56898 BDH2 4.05062122865546e-06 -0.183388869 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell 7.7983e-14 rs13107325 14 ENSG00000261129 RP11-361D14.2 4 145427052 145430153 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 1.76685e-10 rs75686861 15 ENSG00000250504 KRT18P51 4 145493390 145494135 1 pseudogene 391703 KRT18P51 NA NA 0 0 0 NA NA NA NA Yes IMR90 1.76685e-10 rs75686861 15 ENSG00000248890 HHIP-AS1 4 145564074 145582509 -1 antisense 646576 HHIP-AS1 NA NA 0 0 2 1.27592e-09 6.14439324116744e-06 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Hippocampus:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.76685e-10 rs75686861 15 ENSG00000164161 HHIP 4 145567173 145666423 1 protein_coding 64399 HHIP 0.984617793727221 1.506449143 2 12.31 2 1.84224e-07 2.80852721396721e-05 PsychENCODE_eQTLs:CMC_SVA_cis NA Yes Hippocampus:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.76685e-10 rs75686861 15 ENSG00000249193 HSPD1P5 4 145766777 145768496 1 pseudogene 345041 HSPD1P5 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.76685e-10 rs75686861 15 ENSG00000250406 RP13-539F13.3 4 145772724 145795939 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.76685e-10 rs75686861 15 ENSG00000164162 ANAPC10 4 145888264 146019693 -1 protein_coding 10393 ANAPC10 0.0575682391681918 -0.695568702 0 0 0 NA NA NA NA Yes IMR90 1.76685e-10 rs75686861 15 ENSG00000164163 ABCE1 4 146019084 146050331 1 protein_coding 6059 ABCE1 0.999982596858514 -1.833819402 0 0 0 NA NA NA NA Yes IMR90 1.76685e-10 rs75686861 15 ENSG00000164164 OTUD4 4 146031990 146101313 -1 protein_coding 54726 OTUD4 0.999916478365076 -1.53473902 0 0 2 0.000168952 0.009 PsychENCODE_eQTLs:CMC_SVA_cis NA Yes IMR90 1.76685e-10 rs75686861 15 ENSG00000137473 TTC29 4 147627790 147867034 -1 protein_coding 83894 TTC29 1.57133321621439e-06 -0.637384565 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.76685e-10 rs75686861 15 ENSG00000248764 RP11-292D4.2 4 147855153 147866623 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.76685e-10 rs75686861 15 ENSG00000248346 RP11-292D4.1 4 147878590 147896609 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.76685e-10 rs75686861 15 ENSG00000059691 PET112 4 152591656 152682175 -1 protein_coding 5188 PET112 6.06135240467788e-10 -0.051187584 0 0 1 2.7724e-06 0.0203203285420945 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000151729 SLC25A4 4 186064395 186071536 1 protein_coding 291 SLC25A4 0.483364232516032 NA 0 0 18 2.2506e-09 7.32600732600733e-05 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000049192 ADAMTS6 5 64444563 64777747 -1 protein_coding 11174 ADAMTS6 0.998800472645028 -1.50646182 0 0 18 8.6282e-46 0 DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:eQTLGen_cis_eQTLs:GTEx/v8/Testis:GTEx/v7/Testis:GTEx/v6/Testis NA No NA 4.79954e-09 rs13190020 16 ENSG00000250081 CTD-2116N20.1 5 64782271 64782875 -1 lincRNA NA NA NA NA 0 0 18 8.687e-93 0 DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Colon_Transverse:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Testis:GTEx/v7/Testis:GTEx/v6/Testis NA No NA 4.79954e-09 rs13190020 16 ENSG00000123219 CENPK 5 64813593 64858998 -1 protein_coding 64105 CENPK 1.66228604969503e-08 0.339527267 0 0 18 2.2819e-167 0 PsychENCODE_eQTLs:DICE/Monocyte_classical:DICE/Monocyte_non_classical:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellum:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Nerve_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes IMR90:Mesendoderm:hESC 4.79954e-09 rs13190020 16 ENSG00000113593 PPWD1 5 64859063 64883376 1 protein_coding 23398 PPWD1 0.0317857747802877 0.411549096 0 0 18 1.2886e-28 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Sun_Exposed_Lower_leg NA Yes IMR90:Mesendoderm:hESC 4.79954e-09 rs13190020 16 ENSG00000113595 TRIM23 5 64885507 64921802 -1 protein_coding 373 TRIM23 0.0669671844650749 0.393165256 0 0 15 8.25763e-09 6.64939e-26 eQTLGen_cis_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Aorta:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Nerve_Tibial NA Yes Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 4.79954e-09 rs13190020 16 ENSG00000113597 TRAPPC13 5 64920543 64962060 1 protein_coding 80006 TRAPPC13 0.765500289091919 -0.104134763 0 0 18 4.53604e-08 1.6168e-09 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Artery_Tibial NA Yes Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 4.79954e-09 rs13190020 16 ENSG00000253251 CTC-534A2.2 5 64920592 64926718 1 protein_coding 80006 TRAPPC13 NA NA 0 0 18 1.14202e-14 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Lung NA Yes Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 4.79954e-09 rs13190020 16 ENSG00000197860 SGTB 5 64961755 65018862 -1 protein_coding 54557 SGTB 0.991633522582233 0.448268005 18 10.51 18 0 0 PsychENCODE_eQTLs:DICE/Monocyte_non_classical:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Sun_Exposed_Lower_leg NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 4.79954e-09 rs13190020 16 ENSG00000123213 NLN 5 65018023 65167553 1 protein_coding 57486 NLN 3.59597227684907e-07 1.376383452 15 10.51 18 1.5925e-45 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Cells_Transformed_fibroblasts NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 4.79954e-09 rs13190020 16 ENSG00000251648 CTD-2353N24.1 5 65028800 65029481 1 pseudogene NA NA NA NA 3 8.009 10 5.93677e-09 1.14010168607306e-06 PsychENCODE_eQTLs NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 4.79954e-09 rs13190020 16 ENSG00000269961 CTD-2033C11.1 5 65220457 65220963 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell 4.79954e-09 rs13190020 16 ENSG00000112851 ERBB2IP 5 65222303 65378377 1 protein_coding 55914 ERBB2IP 0.993356911851659 0.157601477 0 0 4 1.477e-07 0.000500657112460104 eQTLGen_cis_eQTLs NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell 4.79954e-09 rs13190020 16 ENSG00000252904 SNORA76 5 65257011 65257147 -1 snoRNA 677842 SNORA50C NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 4.79954e-09 rs13190020 16 ENSG00000253744 AC025442.3 5 65439984 65440623 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.79954e-09 rs13190020 16 ENSG00000248846 CTD-2016O11.1 5 65502040 65505275 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs13190020 16 ENSG00000152348 ATG10 5 81267844 81572676 1 protein_coding 83734 ATG10 0.00168505422151429 0.879962946 0 0 6 7.9905e-07 0.00256551893451175 eQTLGen_cis_eQTLs NA No NA NA rs1847053 17 ENSG00000251495 PPIAP11 5 81305421 81305913 -1 pseudogene 5483 PPIAP11 NA NA 0 0 1 4.26043e-05 0.0183978 GTEx/v7/Nerve_Tibial NA No NA NA rs1847053 17 ENSG00000251374 RPS23P5 5 81560976 81561078 -1 pseudogene 100271093 RPS23P5 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm 2.18273e-48 rs17205972 18 ENSG00000186468 RPS23 5 81569177 81574396 -1 protein_coding 6228 RPS23 0.878578937888168 1.135924723 0 0 18 8.7902e-41 0 eQTLGen_cis_eQTLs NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm 2.18273e-48 rs1847053;rs17205972 17:18 ENSG00000205464 ATP6AP1L 5 81575281 81682796 1 protein_coding 92270 ATP6AP1L 0.139629451145235 -0.170351109 0 0 16 2.8115e-15 0 eQTLGen_cis_eQTLs NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm 2.18273e-48 rs1847053;rs17205972 17:18 ENSG00000248393 CTD-2015A6.1 5 81841681 81842129 -1 lincRNA NA NA NA NA 1 6.289 0 NA NA NA NA Yes Left_Ventricle:Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.18273e-48 rs1847053;rs17205972:rs1847053 17:18 ENSG00000248870 CTD-2015A6.2 5 81882595 81883230 -1 lincRNA NA NA NA NA 8 8.412 0 NA NA NA NA Yes Mesendoderm:hESC 2.18273e-48 rs1847053;rs17205972 17:18 ENSG00000249100 CTD-2218K11.2 5 82061223 82062152 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.18273e-48 rs1847053:rs17205972 17:18 ENSG00000240411 RPL5P16 5 82073616 82074405 1 pseudogene 100270837 RPL5P16 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.18273e-48 rs1847053:rs17205972 17:18 ENSG00000248105 CTD-2218K11.3 5 82120703 82121003 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.18273e-48 rs1847053:rs17205972 17:18 ENSG00000248112 RP11-78C3.1 5 82215195 82216938 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs1847053 17 ENSG00000249857 CTD-2227C6.3 5 82236277 82236802 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs1847053 17 ENSG00000248400 ST13P12 5 82264707 82272972 1 pseudogene 100127911 ST13P12 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:hESC NA rs1847053 17 ENSG00000249664 CTD-2227C6.2 5 82308104 82308928 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.18273e-48 rs1847053:rs17205972 17:18 ENSG00000271862 RP11-343L5.2 5 82345195 82346783 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.18273e-48 rs1847053:rs17205972 17:18 ENSG00000174695 TMEM167A 5 82348665 82373682 -1 protein_coding 153339 TMEM167A 0.388457895130387 1.101857689 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 2.18273e-48 rs1847053:rs17205972 17:18 ENSG00000238835 SCARNA18 5 82360023 82360156 -1 snoRNA 677765 SCARNA18 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 2.18273e-48 rs1847053:rs17205972 17:18 ENSG00000152422 XRCC4 5 82373317 82649606 1 protein_coding 7518 XRCC4 0.00125064277988027 -0.286158324 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 2.18273e-48 rs1847053:rs17205972 17:18 ENSG00000243385 CTD-2110K23.1 5 82497048 82497960 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.4998e-10 rs1847053 17 ENSG00000251552 COQ10BP2 5 82575740 82576463 -1 pseudogene 100421072 COQ10BP2 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.4998e-10 rs1847053 17 ENSG00000251395 FTH1P9 5 82722495 82722849 1 pseudogene 106478936 FTH1P9 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 6.4998e-10 rs1847053 17 ENSG00000038427 VCAN 5 82767284 82878122 1 protein_coding 1462 VCAN 0.999750597976069 -0.333731448 11 14.57 0 NA NA NA NA Yes Promoter_anchored_loops:Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 2.18273e-48 rs17205972;rs1847053 17:18 ENSG00000249835 VCAN-AS1 5 82827171 82877139 -1 antisense 105379054 VCAN-AS1 NA NA 11 14.57 0 NA NA NA NA Yes Left_Ventricle:Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.18273e-48 rs17205972;rs1847053 17:18 ENSG00000253073 RN7SKP295 5 82981685 82981837 1 misc_RNA 106480924 RN7SKP295 NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs1847053 17 ENSG00000206744 RNU6-620P 5 82999267 82999362 1 snRNA 106481377 RNU6-620P NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs1847053 17 ENSG00000249349 CTC-384G19.1 5 84408160 84408574 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs1847053 17 ENSG00000248674 RBBP4P6 5 84486447 84486648 -1 pseudogene 100820741 RBBP4P6 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1847053 17 ENSG00000250253 RP11-1072N2.2 5 84505878 84506721 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1847053 17 ENSG00000249792 RP11-1072N2.3 5 84508776 84509432 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1847053 17 ENSG00000248667 CTD-2331D11.2 5 84715846 84716269 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs1847053 17 ENSG00000249023 CTD-2331D11.3 5 84725520 84726002 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1847053 17 ENSG00000249842 CTD-2331D11.4 5 84742792 84743576 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1847053 17 ENSG00000243859 RPL5P17 5 84760252 84761128 1 pseudogene 100270839 RPL5P17 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 6.4998e-10 rs1847053 17 ENSG00000215953 AC026700.1 5 84823862 84823952 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs1847053 17 ENSG00000251066 CTC-534B23.1 5 84845227 84845770 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell NA rs1847053 17 ENSG00000168944 CEP120 5 122680579 122759286 -1 protein_coding 153241 CEP120 4.34470692506916e-11 -0.528864642 0 0 0 NA NA NA NA Yes Mesendoderm NA rs116617502 19 ENSG00000250539 KRT8P33 5 122736616 122738038 -1 pseudogene 100418737 KRT8P33 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs116617502 19 ENSG00000249400 HMGB3P17 5 122804475 122805123 -1 pseudogene 100419948 HMGB3P17 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs116617502 19 ENSG00000202105 Y_RNA 5 122846130 122846231 -1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs116617502 19 ENSG00000151292 CSNK1G3 5 122847793 122952739 1 protein_coding 1456 CSNK1G3 0.996751666329429 -0.611901273 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs116617502 19 ENSG00000235275 KRT18P16 5 122971804 122973097 1 pseudogene 391827 KRT18P16 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.27732e-08 rs116617502 19 ENSG00000250862 HMGB1P29 5 123556272 123556770 -1 pseudogene 100873892 HMGB1P29 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs116617502 19 ENSG00000253807 LINC01170 5 123641923 123740772 -1 lincRNA 103724389 LINC01170 NA NA 0 0 0 NA NA NA NA Yes Hippocampus:Left_Ventricle:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.27732e-08 rs116617502 19 ENSG00000251421 CTC-369A16.2 5 123731296 123736088 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Hippocampus:Left_Ventricle:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.27732e-08 rs116617502 19 ENSG00000251662 CTC-369A16.3 5 123731640 123736348 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Hippocampus:Left_Ventricle:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.27732e-08 rs116617502 19 ENSG00000248600 CTD-2308B18.4 5 123791066 123795791 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.27732e-08 rs116617502 19 ENSG00000251214 CTD-2308B18.1 5 123795605 123796242 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.27732e-08 rs116617502 19 ENSG00000250438 CTD-2308B18.2 5 123805284 123805594 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:hESC NA rs116617502 19 ENSG00000248296 CTD-2308B18.3 5 123828468 123872041 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000168916 ZNF608 5 123972608 124084500 -1 protein_coding 57507 ZNF608 0.999968158467997 -0.642590227 0 0 0 NA NA NA NA Yes Adult_Cortex:Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000249112 RP11-43D2.2 5 124043520 124046430 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Hippocampus:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000250206 RP11-436H11.2 5 124064524 124065086 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Hippocampus:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000250530 RP11-436H11.3 5 124065403 124065848 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Hippocampus:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000251274 RP11-436H11.4 5 124068940 124069465 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Hippocampus:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000251456 RP11-436H11.5 5 124070311 124070868 -1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Hippocampus:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000249643 RP11-436H11.6 5 124073092 124073698 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Hippocampus:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000242814 RP11-436H11.1 5 124144521 124144926 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000248443 RP11-284A20.3 5 124165165 124165983 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs116617502 19 ENSG00000249261 RP11-284A20.2 5 124204665 124205607 -1 lincRNA NA NA NA NA 2 0.251 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000249423 RP11-284A20.1 5 124255640 124257291 1 lincRNA NA NA NA NA 13 16.7 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell 1.27732e-08 rs116617502 19 ENSG00000250411 RP11-257I8.2 5 124372524 124377932 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000250194 RP11-257I8.1 5 124410358 124410673 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000249365 RP11-508M8.1 5 124443897 124485622 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs116617502 19 ENSG00000248631 RP11-425E13.1 5 124537581 124538223 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000250721 HMGB1P22 5 124601221 124601344 1 pseudogene 644659 HMGB1P22 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs116617502 19 ENSG00000222107 RN7SKP117 5 124686561 124686824 -1 misc_RNA 106479147 RN7SKP117 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000249932 RP11-395P13.2 5 124704261 124704842 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000248147 RP11-395P13.1 5 124704456 124705035 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000249677 RP11-395P13.3 5 124705858 124706617 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000250402 RP11-395P13.4 5 124712527 124713132 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000250269 RP11-395P13.5 5 124718552 124719148 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000251554 RP11-395P13.6 5 124731072 124731673 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000260192 RP11-756H20.1 5 124828954 124937920 1 lincRNA 101927460 LINC02240 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000249950 CTC-394G3.1 5 125198439 125198886 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000249904 CTC-394G3.2 5 125221978 125222446 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000241888 RPSAP37 5 125302470 125303778 -1 pseudogene 100270915 RPSAP37 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs116617502 19 ENSG00000248752 RP11-114J13.1 5 125412493 125615493 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.27732e-08 rs116617502 19 ENSG00000248107 CTC-339D2.1 5 125515270 125529543 1 lincRNA 102546228 LINC02039 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.27732e-08 rs116617502 19 ENSG00000265637 AC010235.1 5 125532528 125532608 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000155324 GRAMD3 5 125695824 125832186 1 protein_coding 65983 GRAMD3 1.53546581217794e-07 -0.073307182 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.27732e-08 rs116617502 19 ENSG00000250602 RP11-517I3.1 5 125769197 125826063 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs116617502 19 ENSG00000164904 ALDH7A1 5 125877533 125931110 -1 protein_coding 501 ALDH7A1 1.95312955165253e-12 1.760790554 0 0 5 8.824e-07 0.00737753295298052 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000200347 RNU6-963P 5 125888994 125889094 -1 snRNA NA RNU6-963P NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm NA rs116617502 19 ENSG00000251072 RP11-434D11.4 5 126087655 126112178 -1 lincRNA 102723557 LMNB1-DT NA NA 0 0 0 NA NA NA NA Yes GM12878 1.27732e-08 rs116617502 19 ENSG00000252185 RNU6-752P 5 126091008 126091109 -1 snRNA 106481417 RNU6-752P NA NA 0 0 0 NA NA NA NA Yes GM12878 1.27732e-08 rs116617502 19 ENSG00000113368 LMNB1 5 126112315 126172712 1 protein_coding 4001 LMNB1 0.952857388391862 NA 0 0 0 NA NA NA NA Yes GM12878 1.27732e-08 rs116617502 19 ENSG00000205279 CTXN3 5 126984736 126994322 1 protein_coding 613212 CTXN3 0.544481267710668 0.275256712 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 8.62979e-11 rs12187568 20 ENSG00000248799 CTC-548H10.2 5 126987385 126999721 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 8.62979e-11 rs12187568 20 ENSG00000251032 RP11-483H11.1 5 127120310 127122734 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 8.62979e-11 rs12187568 20 ENSG00000265691 MIR4460 5 128732755 128732840 -1 miRNA 100616325 MIR4460 NA NA 1 3.115 0 NA NA NA NA No NA 8.62979e-11 rs12187568 20 ENSG00000249421 ADAMTS19-AS1 5 128795252 128796382 -1 antisense 103689846 ADAMTS19-AS1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.62979e-11 rs12187568 20 ENSG00000145808 ADAMTS19 5 128795958 129074376 1 protein_coding 171019 ADAMTS19 0.951958940870202 0.787855457 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.62979e-11 rs12187568 20 ENSG00000186367 KIAA1024L 5 129083772 129102425 1 protein_coding 100127206 KIAA1024L NA 1.581396521 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.62979e-11 rs12187568 20 ENSG00000198108 CHSY3 5 129240165 129522327 1 protein_coding 337876 CHSY3 0.011861287143968 NA 0 0 1 0.000125037 1.2694e-28 GTEx/v8/Cells_Cultured_fibroblasts NA Yes Mesenchymal_Stem_Cell 8.62979e-11 rs12187568 20 ENSG00000244192 RP11-114H7.1 5 130325590 130326121 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 8.62979e-11 rs12187568 20 ENSG00000250405 RP11-114H7.2 5 130329946 130331857 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 8.62979e-11 rs12187568 20 ENSG00000248955 RP11-114H7.3 5 130344276 130344435 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 8.62979e-11 rs12187568 20 ENSG00000218577 RP3-416J7.1 6 167607 170631 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 5.61048e-13 rs7766042 21 ENSG00000263667 RP3-416J7.4 6 181466 205484 -1 lincRNA 285766 LOC285766 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 5.61048e-13 rs7766042 21 ENSG00000205653 RP3-416J7.5 6 203313 206392 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 5.61048e-13 rs7766042 21 ENSG00000112679 DUSP22 6 291630 351355 1 protein_coding 56940 DUSP22 0.00430707145380812 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 5.61048e-13 rs7766042 21 ENSG00000137265 IRF4 6 391739 411447 1 protein_coding 3662 IRF4 0.922220690010892 2.34445154 0 0 0 NA NA NA NA Yes Fetal_Cortex:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.61048e-13 rs7766042 21 ENSG00000112685 EXOC2 6 485133 693117 -1 protein_coding 55770 EXOC2 0.000114966062554538 -0.462649197 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.61048e-13 rs7766042 21 ENSG00000230433 RP1-20B11.2 6 524171 525581 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.61048e-13 rs7766042 21 ENSG00000188996 HUS1B 6 655939 656963 -1 protein_coding 135458 HUS1B 0.00831323325620067 -0.38177599 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 5.61048e-13 rs7766042 21 ENSG00000219712 RP11-532F6.2 6 669081 670307 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 5.61048e-13 rs7766042 21 ENSG00000272463 RP11-532F6.3 6 708592 711405 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell 5.61048e-13 rs7766042 21 ENSG00000271727 RP11-532F6.4 6 711533 750729 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell 5.61048e-13 rs7766042 21 ENSG00000271911 RP11-532F6.5 6 761675 780648 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.61048e-13 rs7766042 21 ENSG00000272485 RP11-284J1.1 6 774747 780214 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.61048e-13 rs7766042 21 ENSG00000260982 RP5-1077H22.2 6 905462 909594 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.61048e-13 rs7766042 21 ENSG00000229796 RP5-1077H22.1 6 958563 962511 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.61048e-13 rs7766042 21 ENSG00000270937 RP5-856G1.1 6 1026729 1027460 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.61048e-13 rs7766042 21 ENSG00000176515 AL033381.1 6 1080164 1105181 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.61048e-13 rs7766042 21 ENSG00000238438 snoU13 6 1186753 1186855 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 5.61048e-13 rs7766042 21 ENSG00000261730 RP4-668J24.2 6 1384025 1385301 -1 antisense NA NA NA NA 18 9.532 0 NA NA NA NA No NA NA rs7766042 21 ENSG00000137273 FOXF2 6 1390069 1395832 1 protein_coding 2295 FOXF2 NA NA 1 4.751 39 2.35004e-07 0.000114975 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adrenal_Gland:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts NA Yes Fetal_Cortex 5.61048e-13 rs7766042 21 ENSG00000054598 FOXC1 6 1610681 1614127 1 protein_coding 2296 FOXC1 NA -0.165064876 0 0 0 NA NA NA NA Yes hESC 5.61048e-13 rs7766042 21 ENSG00000219582 HNRNPA1P58 6 24002052 24002658 1 pseudogene 100289286 HNRNPA1P58 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000146038 DCDC2 6 24171984 24358280 -1 protein_coding 51473 DCDC2 1.04848738314639e-05 2.523978825 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000146049 KAAG1 6 24357131 24358512 1 protein_coding 353219 KAAG1 0.0191912389509573 -0.039719636 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000137261 KIAA0319 6 24544332 24646383 -1 protein_coding 9856 KIAA0319 7.95792630986591e-12 1.683897307 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000218186 KRT8P43 6 24598240 24600018 1 pseudogene 100289319 KRT8P43 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs115740542 22 ENSG00000111802 TDP2 6 24650205 24667261 -1 protein_coding 51567 TDP2 0.000137008141135578 0.245867676 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000112304 ACOT13 6 24667263 24705293 1 protein_coding 55856 ACOT13 3.42929947285046e-05 0.981955351 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000272345 RP1-30M3.5 6 24701135 24702021 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs115740542 22 ENSG00000112308 C6orf62 6 24705089 24721064 -1 protein_coding 81688 C6orf62 0.946557424258141 -0.700309965 0 0 1 6.3436e-06 0.0181126878630022 eQTLGen_cis_eQTLs NA Yes Mesenchymal_Stem_Cell:Mesendoderm NA rs115740542 22 ENSG00000272402 RP1-30M3.6 6 24706975 24707379 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs115740542 22 ENSG00000224164 RP3-369A17.4 6 24742530 24752149 1 lincRNA 105374978 LOC105374978 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm NA rs115740542 22 ENSG00000218806 RP3-369A17.2 6 24750899 24751853 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm NA rs115740542 22 ENSG00000112312 GMNN 6 24775159 24786327 1 protein_coding 51053 GMNN 0.607453614744368 0.172625527 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs115740542 22 ENSG00000260286 C6orf229 6 24797549 24799117 -1 protein_coding 101928603 C6orf229 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs115740542 22 ENSG00000111913 FAM65B 6 24797601 25042238 -1 protein_coding 9750 FAM65B 0.971310088681335 0.949895566 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000263391 AL512428.1 6 24840195 24840293 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000217083 RP1-245M18.2 6 24948108 24948572 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell NA rs115740542 22 ENSG00000214975 PPIAP29 6 24976647 24977210 1 pseudogene 134997 PPIAP29 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell NA rs115740542 22 ENSG00000272053 RP11-367G6.3 6 25015180 25042398 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000220517 ASS1P1 6 25023475 25024711 -1 pseudogene 442167 ASS1P1 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs115740542 22 ENSG00000244618 RN7SL334P 6 25031243 25031510 -1 misc_RNA 106480502 RN7SL334P NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs115740542 22 ENSG00000229313 RP3-425P12.5 6 25042067 25056892 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000223623 RP3-425P12.1 6 25053855 25057301 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000230372 RP3-425P12.2 6 25061853 25063735 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000168405 CMAHP 6 25081548 25166793 -1 pseudogene 8418 CMAHP NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000219682 RP3-425P12.4 6 25140212 25141649 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000262400 RP11-191A15.1 6 25152775 25153111 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000217805 RP11-191A15.2 6 25181587 25181973 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000222373 RNY5P5 6 25192641 25192718 1 misc_RNA 100379658 RNY5P5 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000264238 AL590084.1 6 25203481 25203568 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000219681 RP11-191A15.4 6 25218916 25219297 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000235733 RP3-522P13.3 6 25245584 25261639 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000271108 KATNBL1P5 6 25248491 25249007 1 pseudogene 100420841 KATNBL1P5 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000216718 RP3-522P13.1 6 25261467 25261959 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000213972 RP3-522P13.2 6 25272428 25273979 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000079691 LRRC16A 6 25279306 25620758 1 protein_coding 55604 LRRC16A 0.502318842467879 0.400706509 1 5.366 6 5.0871e-07 0.00165936709641601 eQTLGen_cis_eQTLs NA Yes Aorta:Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000207286 Y_RNA 6 25287660 25287761 -1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000207490 RNU6-987P 6 25383827 25383930 1 snRNA 106480002 RNU6-987P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs115740542 22 ENSG00000253017 AL160037.1 6 25408123 25408199 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000238322 snoU13 6 25435508 25435590 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000079689 SCGN 6 25652464 25702011 1 protein_coding 10590 SCGN 0.0359460022848758 0.102935794 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000217408 PRELID1P2 6 25678997 25679392 -1 pseudogene 100419971 PRELID1P2 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000164508 HIST1H2AA 6 25726291 25726790 -1 protein_coding 221613 HIST1H2AA 0.00086097937187989 0.365964669 0 0 0 NA NA NA NA Yes Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs115740542 22 ENSG00000146047 HIST1H2BA 6 25727137 25727573 1 protein_coding 255626 HIST1H2BA 0.132823726172591 0.401920693 0 0 0 NA NA NA NA Yes Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs115740542 22 ENSG00000178762 HIST1H2BPS1 6 25732010 25732390 -1 pseudogene 100288742 HIST1H2BPS1 NA NA 0 0 0 NA NA NA NA Yes Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs115740542 22 ENSG00000216436 HIST1H2APS1 6 25732725 25733055 1 pseudogene 387319 HIST1H2APS1 NA NA 0 0 0 NA NA NA NA Yes Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs115740542 22 ENSG00000146039 SLC17A4 6 25754927 25781419 1 protein_coding 10050 SLC17A4 6.33422534991957e-06 0.944835588 0 0 9 3.43698e-05 0.000501817 GTEx/v8/Testis NA Yes Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.30884e-15 rs115740542 22 ENSG00000124568 SLC17A1 6 25783125 25832287 -1 protein_coding 6568 SLC17A1 2.59261497697838e-10 -0.181263012 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000124564 SLC17A3 6 25833294 25882514 -1 protein_coding 10786 SLC17A3 9.88205561287661e-14 -0.246502705 3 3.952 10 3.5008e-11 0 eQTLGen_cis_eQTLs NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.30884e-15 rs115740542;rs115740542:rs3129787 22:23 ENSG00000242387 HIST1H2APS2 6 25882254 25882623 -1 pseudogene 85303 HIST1H2APS2 NA NA 1 3.952 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542;rs115740542:rs3129787 22:23 ENSG00000112337 SLC17A2 6 25912982 25930946 -1 protein_coding 10246 SLC17A2 0.00466985446742192 -0.129201002 1 2.397 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542;rs115740542:rs3129787 22:23 ENSG00000112343 TRIM38 6 25963030 25987384 1 protein_coding 10475 TRIM38 4.75130205096512e-06 -0.220583262 0 0 10 1.38628e-08 2.9769e-48 eQTLGen_cis_eQTLs:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Thyroid NA Yes Mesendoderm:hESC 5.30884e-15 rs115740542 22 ENSG00000272558 U91328.21 6 25984040 25999395 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:hESC NA rs115740542 22 ENSG00000272065 U91328.20 6 25990989 25991454 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:hESC NA rs115740542 22 ENSG00000272462 U91328.19 6 25992890 26002003 1 lincRNA NA NA NA NA 0 0 10 9.9038e-25 1.95046e-118 PsychENCODE_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes Mesendoderm:hESC 5.30884e-15 rs115740542 22 ENSG00000272810 U91328.22 6 26013469 26013985 1 lincRNA NA NA NA NA 0 0 10 3.51602e-11 2.20766e-25 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.30884e-15 rs115740542;rs115740542:rs3129787 22:23 ENSG00000224447 HIST1H1PS2 6 26016607 26016829 1 pseudogene 10338 HIST1H1PS2 NA NA 0 0 0 NA NA NA NA Yes Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000124610 HIST1H1A 6 26017260 26018040 -1 protein_coding 3024 HIST1H1A 0.00353079926543669 -0.372206788 0 0 0 NA NA NA NA Yes Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000198366 HIST1H3A 6 26020718 26021186 1 protein_coding 8350 HIST1H3A 3.98008178767139e-05 -0.225706842 0 0 0 NA NA NA NA Yes Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000196176 HIST1H4A 6 26021907 26022278 1 protein_coding 8359 HIST1H4A 0.00228540295756206 0.434170117 0 0 0 NA NA NA NA Yes Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000124529 HIST1H4B 6 26027124 26027480 -1 protein_coding 8366 HIST1H4B 0.00854182671998013 0.166119276 0 0 0 NA NA NA NA Yes Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000124693 HIST1H3B 6 26031817 26032288 -1 protein_coding 8358 HIST1H3B 0.307282993148648 0.251696243 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000137259 HIST1H2AB 6 26033320 26033796 -1 protein_coding 8335 HIST1H2AB 0.00531944331445787 0.228134732 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000196226 HIST1H2BB 6 26043455 26043885 -1 protein_coding 3018 HIST1H2BB 0.130327871216174 0.288116693 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000234816 U91328.2 6 26044217 26044585 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000196532 HIST1H3C 6 26045639 26046097 1 protein_coding 8352 HIST1H3C 0.215540519058334 -0.193878787 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542 22 ENSG00000187837 HIST1H1C 6 26055968 26056699 -1 protein_coding 3006 HIST1H1C NA 0.137228042 0 0 10 1.1344e-14 0 eQTLGen_cis_eQTLs NA Yes Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.30884e-15 rs115740542 22 ENSG00000010704 HFE 6 26087509 26098571 1 protein_coding 3077 HFE 8.4969700310781e-07 0.210171656 2 25.2 0 NA NA NA NA Yes Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542;rs115740542:rs3129787 22:23 ENSG00000197061 HIST1H4C 6 26104104 26104518 1 protein_coding 8364 HIST1H4C 8.85616839210981e-05 0.852191535 1 3.208 0 NA NA NA NA Yes Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542;rs115740542:rs3129787 22:23 ENSG00000187475 HIST1H1T 6 26107640 26108364 -1 protein_coding 3010 HIST1H1T NA -0.068039131 1 3.208 0 NA NA NA NA Yes Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542;rs115740542:rs3129787 22:23 ENSG00000180596 HIST1H2BC 6 26115101 26124154 -1 protein_coding 8347 HIST1H2BC 0.00287801155749555 0.335736242 1 18.66 6 1.21735e-06 0.000160612335993966 PsychENCODE_eQTLs:CMC_SVA_cis NA No NA 5.30884e-15 rs115740542 22 ENSG00000180573 HIST1H2AC 6 26124373 26139344 1 protein_coding 8334 HIST1H2AC 0.599175549394101 0.73967924 1 18.66 2 7.159e-07 0.00226224872441138 eQTLGen_cis_eQTLs NA No NA 5.30884e-15 rs115740542 22 ENSG00000158373 HIST1H2BD 6 26158349 26171577 1 protein_coding 3017 HIST1H2BD 0.000277979441009119 -0.015297657 0 0 10 6.0422e-31 0 eQTLGen_cis_eQTLs NA No NA 5.30884e-15 rs115740542 22 ENSG00000217159 LARP1P1 6 26164300 26164591 1 pseudogene 100379623 LARP1P1 NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90 NA rs115740542 22 ENSG00000197697 HIST1H2BE 6 26183958 26184454 1 protein_coding 8344 HIST1H2BE 0.000307871828087192 0.445738376 0 0 0 NA NA NA NA Yes GM12878:IMR90 NA rs115740542 22 ENSG00000188987 HIST1H4D 6 26188938 26189304 -1 protein_coding 8360 HIST1H4D 0.00226430020608533 0.870145303 0 0 0 NA NA NA NA Yes GM12878:IMR90 NA rs115740542 22 ENSG00000216331 HIST1H1PS1 6 26195794 26195999 1 pseudogene 387325 HIST1H1PS1 NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90 NA rs115740542 22 ENSG00000197409 HIST1H3D 6 26197068 26199521 -1 protein_coding 8351 HIST1H3D 0.011195071454157 NA 0 0 0 NA NA NA NA Yes GM12878:IMR90 NA rs115740542 22 ENSG00000196866 HIST1H2AD 6 26199079 26199471 -1 protein_coding 3013 HIST1H2AD 3.99677268819075e-05 0.28775859 0 0 0 NA NA NA NA Yes GM12878:IMR90 NA rs115740542 22 ENSG00000197846 HIST1H2BF 6 26199748 26200942 1 protein_coding 8343 HIST1H2BF 0.000300020472922898 0.851062902 0 0 10 5.9184e-12 0 eQTLGen_cis_eQTLs NA Yes GM12878:IMR90:Neural_Progenitor_Cell 5.30884e-15 rs115740542 22 ENSG00000217275 RP1-34B20.4 6 26202384 26202882 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Neural_Progenitor_Cell NA rs115740542 22 ENSG00000198518 HIST1H4E 6 26204858 26206266 1 protein_coding 8367 HIST1H4E 0.000642250549090646 1.835781936 0 0 8 4.9873e-07 0.0016414686825054 eQTLGen_cis_eQTLs NA Yes IMR90:Neural_Progenitor_Cell 5.30884e-15 rs115740542 22 ENSG00000187990 HIST1H2BG 6 26216428 26216872 -1 protein_coding 8339 HIST1H2BG 2.94452400546665e-06 0.025345178 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Neural_Progenitor_Cell NA rs115740542 22 ENSG00000168274 HIST1H2AE 6 26217165 26217711 1 protein_coding 3012 HIST1H2AE 0.62412365369502 -0.273878285 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Neural_Progenitor_Cell NA rs115740542 22 ENSG00000196966 HIST1H3E 6 26225383 26225844 1 protein_coding 8353 HIST1H3E 0.000813428842528686 -0.20979509 0 0 0 NA NA NA NA Yes IMR90:Neural_Progenitor_Cell NA rs115740542 22 ENSG00000218281 HIST1H2APS3 6 26233350 26233483 1 pseudogene 387323 HIST1H2APS3 NA NA 0 0 0 NA NA NA NA Yes IMR90:Neural_Progenitor_Cell NA rs115740542 22 ENSG00000124575 HIST1H1D 6 26234440 26235216 -1 protein_coding 3007 HIST1H1D NA 0.136123163 0 0 0 NA NA NA NA Yes IMR90:Neural_Progenitor_Cell NA rs115740542 22 ENSG00000198327 HIST1H4F 6 26240561 26240976 1 protein_coding 8361 HIST1H4F 0.181985150966619 1.063119385 0 0 0 NA NA NA NA Yes IMR90 NA rs115740542 22 ENSG00000124578 HIST1H4G 6 26246886 26247259 -1 protein_coding 8369 HIST1H4G 0.00262999657981332 -0.050940889 0 0 0 NA NA NA NA Yes IMR90 NA rs115740542 22 ENSG00000256316 HIST1H3F 6 26250370 26250835 -1 protein_coding 8968 HIST1H3F 0.042215361750485 -0.181854433 0 0 0 NA NA NA NA Yes IMR90 NA rs115740542 22 ENSG00000197459 HIST1H2BH 6 26251879 26252303 1 protein_coding 8345 HIST1H2BH 0.000295729876724394 -0.173874453 0 0 0 NA NA NA NA Yes IMR90 NA rs115740542 22 ENSG00000256018 HIST1H3G 6 26271146 26271612 -1 protein_coding 8355 HIST1H3G 1.71005632806188e-05 0.234420172 0 0 0 NA NA NA NA Yes IMR90 NA rs115740542 22 ENSG00000218690 HIST1H2APS4 6 26272421 26272768 -1 pseudogene 8333 HIST1H2APS4 NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs115740542 22 ENSG00000168242 HIST1H2BI 6 26273144 26273622 1 protein_coding 8346 HIST1H2BI 0.138012141980387 -0.249747536 0 0 0 NA NA NA NA Yes IMR90 NA rs115740542 22 ENSG00000158406 HIST1H4H 6 26281283 26285762 -1 protein_coding 8365 HIST1H4H 0.00879032933359599 1.05906941 0 0 10 9.2029e-40 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes Fetal_Cortex:IMR90 5.30884e-15 rs115740542 22 ENSG00000026950 BTN3A1 6 26402465 26415444 1 protein_coding 11119 BTN3A1 8.65113669435817e-07 1.627912919 0 0 1 0.000171247 3.79813e-11 GTEx/v8/Esophagus_Gastroesophageal_Junction NA No NA NA rs115740542 22 ENSG00000124549 BTN2A3P 6 26421619 26432611 1 pseudogene 54718 BTN2A3P NA NA 0 0 8 8.22016e-05 1.00455e-23 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Esophagus_Muscularis NA No NA 5.30884e-15 rs115740542 22 ENSG00000111801 BTN3A3 6 26440700 26453643 1 protein_coding 10384 BTN3A3 7.19024879190517e-10 1.090110123 0 0 25 NA 0.009 CMC_SVA_trans NA No NA NA rs3129787 23 ENSG00000112763 BTN2A1 6 26458150 26476849 1 protein_coding 11120 BTN2A1 1.07467588553941e-18 0.260570683 0 0 10 2.9204e-14 0 eQTLGen_cis_eQTLs:GTEx/v8/Thyroid NA No NA 5.30884e-15 rs115740542 22 ENSG00000228223 HCG11 6 26522076 26526807 1 lincRNA 493812 HCG11 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs3129787 23 ENSG00000261353 CTA-14H9.5 6 26527291 26527632 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs3129787 23 ENSG00000182952 HMGN4 6 26538633 26546482 1 protein_coding 10473 HMGN4 0.557082341510099 -0.351002587 0 0 10 5.6282e-13 0 eQTLGen_cis_eQTLs NA Yes IMR90:Mesenchymal_Stem_Cell 5.30884e-15 rs115740542;rs3129787 22:23 ENSG00000146109 ABT1 6 26597180 26600278 1 protein_coding 29777 ABT1 0.0271055673799205 0.104221009 0 0 0 NA NA NA NA Yes IMR90 NA rs3129787 23 ENSG00000181315 ZNF322 6 26636518 26659980 -1 protein_coding 79692 ZNF322 NA -1.140467931 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs3129787 23 ENSG00000261584 RP11-457M11.5 6 26686469 26688192 1 lincRNA NA NA NA NA 0 0 9 4.8653e-11 0 eQTLGen_cis_eQTLs NA No NA 5.30884e-15 rs115740542 22 ENSG00000224843 LINC00240 6 26924771 26991703 1 lincRNA 100133205 LINC00240 NA NA 0 0 1 0.00064623 3.93674e-13 GTEx/v8/Nerve_Tibial NA No NA 5.30884e-15 rs115740542 22 ENSG00000272312 RP11-239L20.6 6 26968987 26969427 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle 5.29663e-12 rs3129787 23 ENSG00000238621 TRNAI2 6 26988114 26988226 1 miRNA 100189028 TRNAI2 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle 5.29663e-12 rs3129787 23 ENSG00000220581 VN1R12P 6 27001214 27002089 -1 pseudogene 387321 VN1R12P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell NA rs115740542:rs3129787 22:23 ENSG00000216762 VN1R13P 6 27028144 27029028 -1 pseudogene 387322 VN1R13P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell NA rs115740542:rs3129787 22:23 ENSG00000272468 RP1-86C11.7 6 27090436 27091000 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell NA rs115740542:rs3129787 22:23 ENSG00000124635 HIST1H2BJ 6 27093676 27100541 -1 protein_coding 8970 HIST1H2BJ 0.47884211441258 0.308582046 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell NA rs115740542:rs3129787 22:23 ENSG00000196787 HIST1H2AG 6 27100832 27103070 1 protein_coding 8969 HIST1H2AG 0.000610464103704842 -0.741637225 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell NA rs115740542:rs3129787 22:23 ENSG00000197903 HIST1H2BK 6 27106073 27114619 -1 protein_coding 85236 HIST1H2BK 0.490754148427297 -0.043052263 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell NA rs3129787:rs115740542 22:23 ENSG00000198339 HIST1H4I 6 27107076 27108418 1 protein_coding 8294 HIST1H4I 0.446296012965993 -0.468005112 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell NA rs115740542:rs3129787 22:23 ENSG00000184825 HIST1H2AH 6 27114861 27115317 1 protein_coding 85235 HIST1H2AH 6.2950794420684e-05 0.194919981 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell NA rs3129787:rs115740542 22:23 ENSG00000265565 MIR3143 6 27115405 27115467 1 miRNA 100422934 MIR3143 NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell NA rs3129787:rs115740542 22:23 ENSG00000174572 RP11-209A2.1 6 27179023 27179692 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs3129787 23 ENSG00000112812 PRSS16 6 27215480 27224403 1 protein_coding 10279 PRSS16 2.23791834002529e-06 0.008848123 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:hESC NA rs3129787:rs115740542 22:23 ENSG00000270935 XXbac-BPGBPG24O18.1 6 27235892 27237008 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:hESC NA rs3129787:rs115740542 22:23 ENSG00000158553 POM121L2 6 27253682 27279949 -1 protein_coding 94026 POM121L2 NA 0.313408259 0 0 0 NA NA NA NA Yes Spleen:GM12878:IMR90:hESC NA rs3129787 23 ENSG00000220758 VN1R10P 6 27292578 27293742 1 pseudogene 387316 VN1R10P NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs3129787 23 ENSG00000204789 ZNF204P 6 27325604 27339304 -1 pseudogene 7754 ZNF204P NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000124613 ZNF391 6 27342394 27371683 1 protein_coding 346157 ZNF391 9.25869403182407e-07 1.231716533 0 0 2 2.4723e-06 0.0182413156569894 eQTLGen_trans_eQTLs NA Yes Mesenchymal_Stem_Cell NA rs62064364;rs115740542 22:57 ENSG00000271755 RP1-153G14.4 6 27371789 27374743 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000237154 MCFD2P1 6 27375476 27375775 1 pseudogene 645927 MCFD2P1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000096654 ZNF184 6 27418522 27440897 -1 protein_coding 7738 ZNF184 0.133748635714874 -0.545662357 0 0 0 NA NA NA NA Yes Adult_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:hESC NA rs3129787:rs115740542 22:23 ENSG00000270666 XXbac-BPGBPG34I8.1 6 27482818 27483053 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000218347 HNRNPA1P1 6 27490855 27492118 1 pseudogene 645950 HNRNPA1P1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000206671 RNU6-471P 6 27564191 27564296 1 snRNA 106479774 RNU6-471P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000238648 TRNAI6 6 27599188 27599311 1 miRNA 100189131 TRNAI6 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000216915 RP1-97D16.1 6 27704779 27706273 -1 pseudogene NA NA NA NA 0 0 9 1.40506e-11 3.73341739785722e-09 PsychENCODE_eQTLs NA No NA NA rs3129787 23 ENSG00000218069 RSL24D1P1 6 27748398 27748890 -1 pseudogene 100129755 RSL24D1P1 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000217862 HIST1H4PS1 6 27774853 27775117 1 pseudogene 10337 HIST1H4PS1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell:Trophoblast-like_Cell NA rs115740542:rs3129787 22:23 ENSG00000185130 HIST1H2BL 6 27775257 27775709 -1 protein_coding 8340 HIST1H2BL 0.00286755404850941 -0.03011099 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell:Trophoblast-like_Cell NA rs115740542:rs3129787 22:23 ENSG00000196747 HIST1H2AI 6 27775899 27776429 1 protein_coding 8329 HIST1H2AI 0.581587114173739 -0.058326504 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell:Trophoblast-like_Cell NA rs115740542:rs3129787 22:23 ENSG00000203813 HIST1H3H 6 27777842 27778314 1 protein_coding 8357 HIST1H3H 0.02493915563981 -0.177817416 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell:Trophoblast-like_Cell NA rs115740542:rs3129787 22:23 ENSG00000182611 HIST1H2AJ 6 27782112 27782607 -1 protein_coding 8331 HIST1H2AJ 0.19119768143705 0.615053632 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell:Trophoblast-like_Cell NA rs115740542:rs3129787 22:23 ENSG00000196374 HIST1H2BM 6 27782822 27783267 1 protein_coding 8342 HIST1H2BM 0.00275346435077864 -0.27562 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell:Trophoblast-like_Cell NA rs115740542:rs3129787 22:23 ENSG00000197238 HIST1H4J 6 27791884 27792257 1 protein_coding 8363 HIST1H4J 0.423753830207411 0.598449973 0 0 10 0.000100001 0.0428621 GTEx/v7/Thyroid NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell:Trophoblast-like_Cell NA rs3129787;rs115740542:rs3129787 22:23 ENSG00000197914 HIST1H4K 6 27798952 27799305 -1 protein_coding 8362 HIST1H4K 0.429118935200097 0.387416315 0 0 13 7.5057e-07 0.00237671190812504 eQTLGen_cis_eQTLs NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell:Trophoblast-like_Cell NA rs3129787;rs115740542:rs3129787 22:23 ENSG00000184348 HIST1H2AK 6 27805658 27806117 -1 protein_coding 8330 HIST1H2AK 0.0684285015781424 -0.04124411 0 0 3 0.000933320574299166 0.0406860332903284 BRAINEAC/OCTX NA Yes Fetal_Cortex:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC NA rs3129787;rs115740542:rs3129787 22:23 ENSG00000233822 HIST1H2BN 6 27806323 27823487 1 protein_coding 8341 HIST1H2BN 0.139774615254902 0.145508408 0 0 0 NA NA NA NA Yes Fetal_Cortex:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000217646 HIST1H2BPS2 6 27831840 27832179 -1 pseudogene 10340 HIST1H2BPS2 NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000198374 HIST1H2AL 6 27833034 27833606 1 protein_coding 8332 HIST1H2AL 0.0624869158210738 -0.360341181 0 0 0 NA NA NA NA Yes Fetal_Cortex:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000184357 HIST1H1B 6 27834570 27835359 -1 protein_coding 3009 HIST1H1B 0.509138756022723 -0.08989506 0 0 0 NA NA NA NA Yes Fetal_Cortex:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000182572 HIST1H3I 6 27839623 27840099 -1 protein_coding 8354 HIST1H3I 0.360879945054601 -0.232438013 0 0 0 NA NA NA NA Yes Fetal_Cortex:Aorta:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000198558 HIST1H4L 6 27840926 27841289 -1 protein_coding 8368 HIST1H4L 0.191234624133278 0.426890108 0 0 0 NA NA NA NA Yes Fetal_Cortex:Aorta:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell NA rs115740542:rs3129787 22:23 ENSG00000197153 HIST1H3J 6 27858093 27860884 -1 protein_coding 8356 HIST1H3J 0.695883936820569 -0.189708056 0 0 26 3.19091e-07 3.89125e-33 GTEx/v8/Testis:GTEx/v7/Testis NA Yes Fetal_Cortex:Aorta:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell NA rs3129787;rs115740542:rs3129787 22:23 ENSG00000233224 HIST1H2AM 6 27860477 27860963 -1 protein_coding 8336 HIST1H2AM 0.000856482029037302 -0.225135146 0 0 0 NA NA NA NA Yes Fetal_Cortex:Aorta:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell NA rs115740542:rs3129787 22:23 ENSG00000196331 HIST1H2BO 6 27861203 27861669 1 protein_coding 8348 HIST1H2BO 3.07277582735277e-05 -0.223062534 0 0 3 1.0337e-05 0.0291287540886114 eQTLGen_cis_eQTLs NA Yes Fetal_Cortex:Aorta:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell NA rs3129787;rs115740542:rs3129787 22:23 ENSG00000238610 RNU7-26P 6 27865282 27865344 -1 snRNA 100147813 RNU7-26P NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:Aorta:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell NA rs115740542:rs3129787 22:23 ENSG00000168131 OR2B2 6 27878963 27880174 -1 protein_coding 81697 OR2B2 6.86720334316105e-05 -0.212076212 0 0 0 NA NA NA NA Yes Aorta:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Neural_Progenitor_Cell NA rs115740542:rs3129787 22:23 ENSG00000168126 OR2W6P 6 27905243 27906181 1 pseudogene 81406 OR2W6P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000124657 OR2B6 6 27925019 27925960 1 protein_coding 26212 OR2B6 0.0407309275321611 -0.098173144 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell NA rs3129787:rs115740542 22:23 ENSG00000214374 RPLP2P1 6 27932953 27933292 1 pseudogene 442175 RPLP2P1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell NA rs3129787:rs115740542 22:23 ENSG00000216629 OR2W4P 6 27944928 27945853 1 pseudogene 81407 OR2W4P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell NA rs3129787:rs115740542 22:23 ENSG00000217539 IQCB2P 6 27978501 27980133 1 pseudogene 340192 IQCB2P NA NA 0 0 5 3.21505e-05 2.70924e-12 PsychENCODE_eQTLs:GTEx/v8/Testis NA Yes IMR90:Mesenchymal_Stem_Cell NA rs3129787;rs115740542 22:23 ENSG00000199851 U3 6 27983346 27983553 1 snoRNA NA NA NA NA 0 0 3 0.000387104 0.0267452824782429 PsychENCODE_eQTLs NA Yes IMR90:Mesenchymal_Stem_Cell NA rs3129787;rs115740542 22:23 ENSG00000217315 OR2W2P 6 28001725 28002633 1 pseudogene 81694 OR2W2P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000187763 OR2B7P 6 28014212 28015145 1 pseudogene 81695 OR2B7P NA NA 0 0 30 2.26731e-07 7.84917e-15 PsychENCODE_eQTLs:GTEx/v8/Pituitary:GTEx/v6/Thyroid NA Yes IMR90:Mesenchymal_Stem_Cell NA rs3129787;rs115740542 22:23 ENSG00000182477 OR2B8P 6 28021006 28021943 -1 pseudogene 65944 OR2B8P NA NA 0 0 34 4.30328e-18 1.90111e-59 PsychENCODE_eQTLs:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Pituitary:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes IMR90:Mesenchymal_Stem_Cell NA rs3129787;rs115740542 22:23 ENSG00000220721 OR1F12 6 28041094 28042011 1 pseudogene 442179 OR1F12 NA NA 0 0 33 1.19045e-07 9.43338e-20 PsychENCODE_eQTLs:GTEx/v8/Ovary:GTEx/v8/Prostate:GTEx/v8/Thyroid:GTEx/v7/Thyroid NA Yes IMR90 NA rs3129787;rs115740542 22:23 ENSG00000272009 RP1-313I6.12 6 28046570 28048908 -1 antisense 102724889 LOC102724889 NA NA 0 0 35 1.02165e-11 2.1827e-19 PsychENCODE_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Liver:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes IMR90 5.29663e-12 rs3129787;rs115740542 22:23 ENSG00000197279 ZNF165 6 28048753 28057341 1 protein_coding 7718 ZNF165 0.000563292029886091 0.227981468 0 0 36 2.04494e-11 1.75423e-22 PsychENCODE_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Colon_Sigmoid:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pituitary:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Thyroid:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts NA Yes IMR90 5.29663e-12 rs3129787;rs115740542 22:23 ENSG00000219891 ZSCAN12P1 6 28058932 28061442 1 pseudogene 221584 ZSCAN12P1 NA NA 0 0 35 3.0805e-47 0 eQTLGen_cis_eQTLs:GTEx/v8/Testis:GTEx/v7/Testis NA Yes IMR90 5.29663e-12 rs3129787;rs115740542 22:23 ENSG00000219392 RP1-265C24.5 6 28083406 28084329 1 pseudogene NA NA NA NA 0 0 60 1.6069e-26 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:CMC_SVA_cis:CMC_SVA_trans:CMC_NoSVA_cis:CMC_NoSVA_trans:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pituitary:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adrenal_Gland:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Pituitary:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Muscle_Skeletal:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Testis NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell 5.29663e-12 rs3129787;rs115740542:rs3129787 22:23 ENSG00000269293 ZSCAN16-AS1 6 28089573 28105071 -1 antisense 100129195 ZSCAN16-AS1 NA NA 0 0 1 0.000288411 0.00310739 GTEx/v8/Whole_Blood NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell NA rs3129787;rs115740542:rs3129787 22:23 ENSG00000196812 ZSCAN16 6 28092338 28097860 1 protein_coding 80345 ZSCAN16 2.67303498489914e-06 0.184187397 0 0 35 1.0607e-20 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell 5.29663e-12 rs3129787;rs3129787:rs115740542 22:23 ENSG00000261839 RP1-265C24.8 6 28104627 28107456 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell NA rs115740542:rs3129787 22:23 ENSG00000198315 ZKSCAN8 6 28109688 28127250 1 protein_coding 7745 ZKSCAN8 0.000231594506551783 -0.142528224 0 0 38 8.93587e-07 3.82047e-07 CMC_SVA_cis:BRAINEAC/CRBL:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24 NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell 5.29663e-12 rs3129787;rs115740542:rs3129787 22:23 ENSG00000226314 ZNF192P1 6 28129559 28137372 1 pseudogene 651302 ZNF192P1 NA NA 0 0 61 2.8345e-20 7.2904e-32 PsychENCODE_eQTLs:DICE/Monocyte_non_classical:eQTLGen_cis_eQTLs:CMC_SVA_cis:CMC_SVA_trans:CMC_NoSVA_cis:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Thyroid:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Thyroid:GTEx/v6/Brain_Cerebellum NA Yes Mesenchymal_Stem_Cell 5.29663e-12 rs3129787;rs115740542 22:23 ENSG00000216901 AL022393.7 6 28143966 28144452 1 pseudogene NA NA NA NA 0 0 62 2.23424e-54 6.66826e-149 PsychENCODE_eQTLs:DICE/T_CD4_TH1:DICE/T_CD4_TH17:CMC_SVA_cis:CMC_SVA_trans:CMC_NoSVA_cis:CMC_NoSVA_trans:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pituitary:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Spleen:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes Mesenchymal_Stem_Cell 5.29663e-12 rs3129787;rs115740542 22:23 ENSG00000218016 ZNF192P2 6 28155828 28157210 1 pseudogene 222701 ZNF192P2 NA NA 0 0 51 1.92209e-37 2.65379895993168e-34 PsychENCODE_eQTLs:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v6/Brain_Cerebellum:GTEx/v6/Muscle_Skeletal NA Yes Mesenchymal_Stem_Cell 5.29663e-12 rs3129787;rs115740542 22:23 ENSG00000176933 TOB2P1 6 28185421 28186655 -1 pseudogene 222699 TOB2P1 NA NA 0 0 43 5.78326e-06 3.81621e-10 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Sigmoid:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Small_Intestine_Terminal_Ileum NA No NA 5.29663e-12 rs3129787 23 ENSG00000137185 ZSCAN9 6 28192664 28201260 1 protein_coding 7746 ZSCAN9 4.10248860506101e-08 0.461166178 0 0 62 8.2089e-163 0 eQTLGen_cis_eQTLs:GTEx/v8/Whole_Blood:GTEx/v8/Brain_Cerebellum:GTEx/v8/Colon_Transverse:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Brain_Cerebellum:GTEx/v7/Colon_Transverse:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid NA Yes Adult_Cortex:Fetal_Cortex 5.29663e-12 rs3129787 23 ENSG00000187626 ZKSCAN4 6 28212401 28227011 -1 protein_coding 387032 ZKSCAN4 6.74288454800845e-05 0.661631344 0 0 60 3.8411e-18 0 eQTLGen_cis_eQTLs:GTEx/v8/Whole_Blood:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v7/Testis:GTEx/v6/Testis NA Yes IMR90:Mesenchymal_Stem_Cell NA rs3129787;rs115740542:rs3129787 22:23 ENSG00000189134 NKAPL 6 28227098 28228736 1 protein_coding 222698 NKAPL 0.000165621301014734 0.051342603 0 0 1 7.95624e-05 0.00793904 GTEx/v7/Lung NA Yes IMR90:Mesenchymal_Stem_Cell NA rs3129787;rs115740542:rs3129787 22:23 ENSG00000197062 RP5-874C20.3 6 28234788 28245974 1 pseudogene 7741 ZSCAN26 NA NA 0 0 62 2.1418e-128 0 eQTLGen_cis_eQTLs:xQTLServer_eQTLs:CMC_SVA_cis:BRAINEAC/THAL:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Artery_Tibial:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Thyroid NA Yes IMR90:Mesenchymal_Stem_Cell 5.29663e-12 rs3129787;rs115740542:rs3129787 22:23 ENSG00000137338 PGBD1 6 28249314 28270326 1 protein_coding 84547 PGBD1 1.46735073363618e-05 -0.0800605 0 0 33 2.504e-19 0 eQTLGen_cis_eQTLs NA No NA 5.29663e-12 rs3129787 23 ENSG00000235109 ZSCAN31 6 28292470 28324048 -1 protein_coding 64288 ZSCAN31 3.7712697083703e-09 1.107125092 0 0 63 4.66406e-27 7.04604e-48 PsychENCODE_eQTLs:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/MEDU:BRAINEAC/TCTX:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Prostate:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pancreas:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Muscle_Skeletal:GTEx/v6/Pancreas:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Thyroid NA No NA 5.29663e-12 rs3129787 23 ENSG00000189298 ZKSCAN3 6 28317691 28336947 1 protein_coding 80317 ZKSCAN3 0.000122608322341288 -0.65244291 0 0 62 5.7181e-23 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pancreas:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Thyroid NA No NA 5.29663e-12 rs3129787 23 ENSG00000158691 ZSCAN12 6 28346732 28367511 -1 protein_coding 9753 ZSCAN12 1.43991732878074e-05 NA 0 0 31 4.26825e-06 1.70302e-08 GTEx/v8/Muscle_Skeletal:GTEx/v6/Muscle_Skeletal NA Yes Mesenchymal_Stem_Cell 5.29663e-12 rs3129787;rs115740542 22:23 ENSG00000251877 RNU2-45P 6 28378047 28378233 1 snRNA 106480217 RNU2-45P NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs115740542 22 ENSG00000187987 ZSCAN23 6 28399707 28411279 -1 protein_coding 222696 ZSCAN23 0.00270295085017911 0.070656525 0 0 63 4.80101e-41 0 PsychENCODE_eQTLs:DICE/B_cell_naive:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/CRBL:BRAINEAC/FCTX:BRAINEAC/WHMT:BRAINEAC/aveALL:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Thyroid NA No NA 5.29663e-12 rs3129787 23 ENSG00000198704 GPX6 6 28471073 28495992 -1 protein_coding 257202 GPX6 3.13757952195529e-05 0.718702709 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000224586 GPX5 6 28493702 28502729 1 protein_coding 2880 GPX5 0.00888467745572368 0.354876486 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000232040 SCAND3 6 28539407 28583989 -1 protein_coding 114821 SCAND3 9.70724396864633e-09 -0.785031462 3 8.292 0 NA NA NA NA Yes IMR90 NA rs3129787;rs115740542 22:23 ENSG00000246350 RP5-1186N24.3 6 28555155 28559524 1 processed_transcript NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC NA rs3129787:rs115740542 22:23 ENSG00000271440 RP11-373N24.2 6 28601158 28601371 -1 pseudogene NA NA NA NA 5 4.716 0 NA NA NA NA No NA NA rs3129787 23 ENSG00000272278 AL121932.1 6 28615974 28616042 -1 miRNA NA NA NA NA 8 6.093 0 NA NA NA NA No NA NA rs3129787 23 ENSG00000235570 LINC00533 6 28616063 28616843 -1 lincRNA 387055 LINC00533 NA NA 8 6.093 32 1.95946e-05 0.00376228 GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Testis NA No NA 5.29663e-12 rs3129787 23 ENSG00000237425 RPSAP2 6 28699794 28700681 1 pseudogene 442181 RPSAP2 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs115740542:rs3129787 22:23 ENSG00000221191 AL662890.1 6 28743693 28743800 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs3129787 23 ENSG00000235559 NOL5BP 6 28751410 28751781 -1 pseudogene 646192 NOP56P1 NA NA 0 0 0 NA NA NA NA Yes GM12878:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs3129787 23 ENSG00000265764 AL662890.3 6 28763749 28763812 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:Mesendoderm:Neural_Progenitor_Cell:hESC NA rs3129787 23 ENSG00000225173 XXbac-BPG308K3.5 6 28805646 28806783 -1 lincRNA NA NA NA NA 0 0 26 2.48948e-05 0.0285075 GTEx/v8/Brain_Putamen_basal_ganglia NA Yes GM12878:IMR90:Neural_Progenitor_Cell 5.29663e-12 rs3129787 23 ENSG00000225595 XXbac-BPG308K3.6 6 28827402 28832407 -1 lincRNA 401242 LINC01623 NA NA 0 0 55 2.23703e-11 4.68833e-14 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Testis:GTEx/v7/Testis NA Yes GM12878:IMR90:Neural_Progenitor_Cell 5.29663e-12 rs3129787 23 ENSG00000213916 RPL13P 6 28829193 28829824 1 pseudogene 387044 RPL13P NA NA 0 0 1 7.76953e-05 0.0427594670406732 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Promoter_anchored_loops:GM12878:IMR90:Neural_Progenitor_Cell NA rs3129787 23 ENSG00000233366 ZNF90P2 6 28856609 28857683 -1 pseudogene 100419606 ZNF90P2 NA NA 1 2.091 1 0.000236007 0.0196398 GTEx/v8/Testis NA Yes GM12878:IMR90:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs3129787;rs3129787:rs115740542 22:23 ENSG00000224157 HCG14 6 28864307 28865099 1 antisense 414760 HCG14 NA NA 1 2.091 0 NA NA NA NA Yes Promoter_anchored_loops:GM12878:IMR90:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs3129787;rs3129787:rs115740542 22:23 ENSG00000204713 TRIM27 6 28870779 28891766 -1 protein_coding 5987 TRIM27 0.878751858118275 -0.142067713 2 2.091 63 4.65982e-32 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Muscle_Skeletal:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v8/Vagina:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Testis:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes GM12878:IMR90:Trophoblast-like_Cell:hESC 5.29663e-12 rs3129787 23 ENSG00000212240 RNU6-930P 6 28883422 28883521 1 snRNA 106480622 RNU6-930P NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:GM12878:IMR90:Trophoblast-like_Cell:hESC NA rs3129787 23 ENSG00000204709 C6orf100 6 28911654 28912314 1 protein_coding 729583 C6orf100 NA NA 0 0 56 9.03545e-09 9.26343e-09 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Testis:GTEx/v7/Brain_Cortex:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Artery_Aorta:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops:GM12878:IMR90:Trophoblast-like_Cell:hESC 5.29663e-12 rs3129787 23 ENSG00000228666 KRT18P1 6 28936907 28938237 -1 pseudogene 3879 KRT18P1 NA NA 0 0 8 5.61676e-05 0.00301681 GTEx/v8/Testis:GTEx/v7/Testis NA Yes Promoter_anchored_loops NA rs3129787 23 ENSG00000263426 RN7SL471P 6 28945252 28945547 1 misc_RNA 106481051 RN7SL471P NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs3129787 23 ENSG00000227214 HCG15 6 28953980 28955261 1 antisense 414761 HCG15 NA NA 0 0 1 0.000489496 0.000732975 GTEx/v8/Cells_Cultured_fibroblasts NA Yes Promoter_anchored_loops NA rs3129787 23 ENSG00000244349 HCG16 6 28954577 28956313 1 antisense 414761 HCG16 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs3129787 23 ENSG00000197935 ZNF311 6 28962562 28973093 -1 protein_coding 282890 ZNF311 0.000129446471411909 0.377857886 0 0 62 2.7154e-17 0 DICE/NK:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Artery_Tibial:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Thyroid:GTEx/v7/Artery_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v6/Artery_Tibial:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.29663e-12 rs3129787 23 ENSG00000223677 OR2AD1P 6 28994457 28995384 -1 pseudogene 79313 OR2AD1P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs3129787 23 ENSG00000236909 OR2P1P 6 29039601 29040376 -1 pseudogene 442183 OR2P1P NA NA 1 0.225 0 NA NA NA NA No NA 5.29663e-12 rs3129787 23 ENSG00000228364 SAR1P1 6 29044350 29044945 -1 pseudogene 646260 SAR1AP1 NA NA 2 0.225 0 NA NA NA NA No NA 5.29663e-12 rs3129787 23 ENSG00000204703 OR2B3 6 29053985 29055090 -1 protein_coding 442184 OR2B3 0.0013369321318042 0.458839963 2 0.225 0 NA NA NA NA No NA 5.29663e-12 rs3129787 23 ENSG00000227206 XXbac-BCX196D17.5 6 29091987 29096685 1 lincRNA NA NA NA NA 1 5.72 0 NA NA NA NA No NA NA rs3129787 23 ENSG00000203492 OR2N1P 6 29105657 29106593 -1 pseudogene 26701 OR2N1P NA NA 1 5.72 0 NA NA NA NA No NA NA rs3129787 23 ENSG00000204700 OR2J2 6 29141311 29142351 1 protein_coding 26707 OR2J2 0.0107267189301636 0.271259236 8 12.19 0 NA NA NA NA No NA NA rs3129787 23 ENSG00000224233 OR2J4P 6 29149287 29150222 1 pseudogene 442188 OR2J4P NA NA 11 8.021 0 NA NA NA NA No NA NA rs3129787 23 ENSG00000230598 OR2H4P 6 29183013 29183956 1 pseudogene 442189 OR2H4P NA NA 7 6.461 28 9.50471e-12 6.52588e-19 GTEx/v8/Testis:GTEx/v7/Testis NA No NA 5.29663e-12 rs3129787 23 ENSG00000232505 XXbac-BPG308J9.3 6 29191750 29258217 1 lincRNA NA NA NA NA 2 4.238 0 NA NA NA NA No NA NA rs3129787 23 ENSG00000213911 OR2G1P 6 29197004 29197934 -1 pseudogene 26717 OR2G1P NA NA 1 4.238 0 NA NA NA NA No NA NA rs3129787 23 ENSG00000204697 OR2U1P 6 29230480 29231856 -1 pseudogene 26695 OR2U1P NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs3129787 23 ENSG00000242524 OR2U2P 6 29236239 29237198 -1 pseudogene 26694 OR2U2P NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs3129787 23 ENSG00000197171 OR2B4P 6 29258488 29259430 1 pseudogene 101929006 OR2B4P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm:hESC 5.29663e-12 rs3129787 23 ENSG00000204695 OR14J1 6 29274403 29275519 1 protein_coding 442191 OR14J1 8.02406099709927e-08 1.335471591 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm:hESC 5.29663e-12 rs3129787 23 ENSG00000230056 DDX6P1 6 29297403 29298838 -1 pseudogene 442192 DDX6P1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesendoderm:hESC 5.29663e-12 rs3129787 23 ENSG00000243729 OR5V1 6 29323007 29399744 -1 protein_coding 81696 OR5V1 0.00344261897900665 0.32363506 0 0 26 0.000102860226586099 0.0486732873560182 BRAINEAC/THAL NA Yes Promoter_anchored_loops 5.29663e-12 rs3129787 23 ENSG00000204694 OR11A1 6 29393281 29424848 -1 protein_coding 26531 OR11A1 0.0434844025575059 1.230255274 0 0 26 0.000102860226586099 0.0486732873560182 BRAINEAC/THAL NA No NA 5.29663e-12 rs3129787 23 ENSG00000230164 MAS1LP1 6 29442802 29443848 -1 pseudogene 646366 MAS1LP1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm:hESC 5.29663e-12 rs3129787 23 ENSG00000204687 MAS1L 6 29454474 29455738 -1 protein_coding 116511 MAS1L 0.000466205666114264 0.689547747 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm:hESC 5.29663e-12 rs3129787 23 ENSG00000213900 RPS17P1 6 29457048 29457453 -1 pseudogene 442195 RPS17P1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm:hESC 5.29663e-12 rs3129787 23 ENSG00000229274 XXbac-BPG13B8.10 6 29465286 29478333 1 lincRNA 105375009 LOC105375009 NA NA 0 0 47 5.38594e-06 5.69582e-07 GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v7/Esophagus_Muscularis NA Yes IMR90:Mesendoderm:hESC 5.29663e-12 rs3129787 23 ENSG00000224582 LINC01015 6 29497197 29501345 1 antisense 100507362 LINC01015 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.29663e-12 rs3129787 23 ENSG00000229281 GPR53P 6 29505481 29506564 -1 pseudogene 9292 GPR53P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.29663e-12 rs3129787 23 ENSG00000237988 OR2I1P 6 29520996 29521943 1 pseudogene 442197 OR2I1P NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.29663e-12 rs3129787 23 ENSG00000213886 UBD 6 29523292 29527702 -1 protein_coding 10537 UBD 0.0798957514124674 0.401530797 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.29663e-12 rs3129787 23 ENSG00000204681 GABBR1 6 29523406 29601753 -1 protein_coding 2550 GABBR1 0.999969901472702 0.238892484 0 0 54 2.1843e-19 0 eQTLGen_cis_eQTLs NA Yes Promoter_anchored_loops 5.29663e-12 rs3129787 23 ENSG00000232173 OR2H5P 6 29541686 29542613 1 pseudogene 26713 OR2H5P NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.29663e-12 rs3129787 23 ENSG00000227609 TMEM183AP1 6 29545236 29545525 1 pseudogene 100048909 TMEM183AP1 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.29663e-12 rs3129787 23 ENSG00000201330 SNORD32B 6 29550026 29550109 1 snoRNA 692092 SNORD32B NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.29663e-12 rs3129787 23 ENSG00000231301 RPL13AP 6 29550285 29550802 1 pseudogene 387043 RPL13AP NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.29663e-12 rs3129787 23 ENSG00000204657 OR2H2 6 29555683 29556745 1 protein_coding 7932 OR2H2 0.0899459247726437 0.69683603 0 0 21 2.55213e-05 1.93261e-11 GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic NA Yes Promoter_anchored_loops:Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.29663e-12 rs3129787 23 ENSG00000235238 SUMO2P1 6 29603837 29604120 -1 pseudogene 285829 SUMO2P1 NA NA 0 0 3 0.000183015 0.0106225 GTEx/v8/Heart_Left_Ventricle NA Yes Promoter_anchored_loops NA rs3129787 23 ENSG00000204655 MOG 6 29624758 29640149 1 protein_coding 4340 MOG 0.103680312661872 0.12218187 0 0 1 0.000352849 2.92588e-10 GTEx/v8/Artery_Tibial NA Yes Adult_Cortex NA rs3129787 23 ENSG00000204644 ZFP57 6 29640169 29648887 -1 protein_coding 346171 ZFP57 0.00181593681997415 0.595857039 0 0 44 7.7081e-97 0 eQTLGen_cis_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Pancreas:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Stomach:GTEx/v6/Thyroid NA No NA 5.29663e-12 rs3129787 23 ENSG00000233916 ZDHHC20P1 6 29675902 29676324 -1 pseudogene 100048907 ZDHHC20P1 NA NA 0 0 25 8.56877e-09 6.52575e-47 GTEx/v8/Testis:GTEx/v7/Testis:GTEx/v6/Testis NA No NA 5.29663e-12 rs3129787 23 ENSG00000204642 HLA-F 6 29690552 29706305 1 protein_coding 3134 HLA-F 4.40041067524121e-05 0.734262845 0 0 18 4.5911e-23 0 eQTLGen_cis_eQTLs:GTEx/v8/Cells_Cultured_fibroblasts NA No NA 5.29663e-12 rs3129787 23 ENSG00000214922 HLA-F-AS1 6 29694378 29716826 -1 processed_transcript 285830 HLA-F-AS1 NA NA 0 0 7 1.03407e-06 2.77141e-18 GTEx/v8/Whole_Blood:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Whole_Blood NA No NA 5.29663e-12 rs3129787 23 ENSG00000239257 RPL23AP1 6 29694446 29694916 -1 pseudogene 6148 RPL23AP1 NA NA 0 0 31 5.3426e-10 2.00065e-94 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Stomach:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Pancreas NA No NA 5.29663e-12 rs3129787 23 ENSG00000235821 IFITM4P 6 29718506 29718925 -1 pseudogene 340198 IFITM4P NA NA 0 0 14 3.59966e-06 1.05735e-36 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Thyroid NA No NA 5.29663e-12 rs3129787 23 ENSG00000181126 HLA-V 6 29758731 29765588 1 pseudogene 352962 HLA-V NA NA 0 0 11 1.49965e-07 6.39567e-38 GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Lung:GTEx/v8/Pancreas:GTEx/v8/Testis:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia NA Yes Promoter_anchored_loops 5.29663e-12 rs3129787 23 ENSG00000176998 HCG4 6 29758816 29760850 -1 pseudogene 54435 HCG4 NA NA 0 0 13 1.1869e-09 1.40527e-55 eQTLGen_cis_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Lung:GTEx/v8/Pancreas:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid NA No NA 5.29663e-12 rs3129787 23 ENSG00000204632 HLA-G 6 29794744 29798902 1 protein_coding 3135 HLA-G 9.54870629366445e-08 1.657983109 0 0 28 3.3098e-83 0 eQTLGen_cis_eQTLs:GTEx/v8/Whole_Blood:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis NA No NA 5.29663e-12 rs3129787 23 ENSG00000230521 HCG4P7 6 29855071 29856045 -1 pseudogene 353004 HCG4P7 NA NA 0 0 29 3.2226e-17 0 eQTLGen_cis_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Nerve_Tibial:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Artery_Aorta NA No NA 5.29663e-12 rs3129787 23 ENSG00000206341 HLA-H 6 29855350 29858259 1 pseudogene 3136 HLA-H NA NA 0 0 25 1.8124e-26 0 eQTLGen_cis_eQTLs NA No NA 5.29663e-12 rs3129787 23 ENSG00000231130 HLA-T 6 29864431 29865563 1 pseudogene 352964 HLA-T NA NA 0 0 27 1.87247e-05 2.35108e-10 GTEx/v8/Whole_Blood:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Lung:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Spleen NA No NA 5.29663e-12 rs3129787 23 ENSG00000227262 HCG4B 6 29893760 29894750 -1 pseudogene 80868 HCG4B NA NA 0 0 2 1.46299e-05 9.97449e-16 GTEx/v8/Nerve_Tibial NA No NA NA rs3129787 23 ENSG00000230795 HLA-K 6 29894236 29897009 1 pseudogene 3138 HLA-K NA NA 0 0 26 1.8415e-49 0 eQTLGen_cis_eQTLs:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Artery_Tibial:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic NA No NA 5.29663e-12 rs3129787 23 ENSG00000228078 HLA-U 6 29901878 29902063 1 pseudogene 352965 HLA-U NA NA 0 0 3 1.14322e-05 3.53826e-22 GTEx/v8/Artery_Aorta:GTEx/v8/Thyroid:GTEx/v6/Artery_Tibial NA No NA 5.29663e-12 rs3129787 23 ENSG00000206503 HLA-A 6 29909037 29913661 1 protein_coding 3105 HLA-A 0.132779664827761 11.80526629 0 0 27 6.1748e-09 8.76542e-54 GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Muscle_Skeletal:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg NA No NA 5.29663e-12 rs3129787 23 ENSG00000227766 HCG4P5 6 29909852 29910844 -1 pseudogene 353003 HCG4P5 NA NA 0 0 1 0.00010774 3.45734e-29 GTEx/v8/Whole_Blood:GTEx/v8/Skin_Sun_Exposed_Lower_leg NA No NA 5.29663e-12 rs3129787 23 ENSG00000229390 MICD 6 29938578 29940241 -1 pseudogene 4279 MICD NA NA 0 0 11 2.2226e-11 0 eQTLGen_cis_eQTLs:GTEx/v8/Lung NA No NA NA rs3129787 23 ENSG00000204625 HCG9 6 29942889 29946183 1 lincRNA 10255 HCG9 NA NA 0 0 25 2.6939e-11 0 eQTLGen_cis_eQTLs NA No NA 5.29663e-12 rs3129787 23 ENSG00000238024 DDX39BP2 6 29960986 29961382 1 pseudogene 100048923 DDX39BP2 NA NA 0 0 25 2.7665e-14 0 eQTLGen_cis_eQTLs NA No NA 5.29663e-12 rs3129787 23 ENSG00000204623 ZNRD1-AS1 6 29968788 30029417 -1 antisense 80862 ZNRD1-AS1 NA NA 0 0 5 1.47432e-05 4.52648e-15 CMC_SVA_cis:GTEx/v8/Brain_Cerebellum NA No NA 5.29663e-12 rs3129787 23 ENSG00000237669 HCG4P3 6 29973898 29974893 -1 pseudogene 353001 HCG4P3 NA NA 0 0 27 1.444e-31 0 eQTLGen_cis_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Thyroid:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Nerve_Tibial NA No NA 5.29663e-12 rs3129787 23 ENSG00000204622 HLA-J 6 29974360 29977733 1 pseudogene 3137 HLA-J NA NA 0 0 27 3.67119e-07 5.44008e-47 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Transverse:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Pituitary:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Artery_Tibial:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Pituitary NA No NA 5.29663e-12 rs3129787 23 ENSG00000066379 ZNRD1 6 30026676 30032686 1 protein_coding 30834 ZNRD1 0.144862729781844 1.484239014 0 0 17 1.63786e-05 1.52081e-25 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Muscle_Skeletal:GTEx/v8/Thyroid NA No NA 5.29663e-12 rs3129787 23 ENSG00000204618 RNF39 6 30038043 30043664 -1 protein_coding 80352 RNF39 0.00666120713219206 1.511421317 0 0 1 0.000150388 5.90368e-30 GTEx/v8/Thyroid NA No NA 5.29663e-12 rs3129787 23 ENSG00000204616 TRIM31 6 30070674 30080883 -1 protein_coding 11074 TRIM31 0.0163881344679348 1.598732605 0 0 23 2.59745e-06 6.10545e-15 eQTLGen_cis_eQTLs:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Thyroid NA No NA NA rs3129787 23 ENSG00000204613 TRIM10 6 30119722 30128711 -1 protein_coding 10107 TRIM10 9.94954187768385e-06 3.206211047 0 0 21 1.6465e-14 0 eQTLGen_cis_eQTLs NA No NA NA rs3129787 23 ENSG00000234127 TRIM26 6 30152232 30181204 -1 protein_coding 7726 TRIM26 0.829653548058971 1.122588623 0 0 4 NA 0.049 CMC_SVA_cis NA No NA NA rs3129787 23 ENSG00000204580 DDR1 6 30844198 30867933 1 protein_coding 780 DDR1 0.0264778570642852 0.516701782 0 0 1 8.2574e-06 0.0496423079494551 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000204463 BAG6 6 31606805 31620482 -1 protein_coding 7917 BAG6 0.999987885791662 -0.321190461 0 0 18 6.5172e-13 0 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000272442 RP11-444E17.6 6 44240931 44346694 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 6.0256e-11 rs35441607 24 ENSG00000146221 TCTE1 6 44246480 44265458 -1 protein_coding 202500 TCTE1 3.26370848659523e-07 -0.347386898 0 0 0 NA NA NA NA Yes IMR90 6.0256e-11 rs35441607 24 ENSG00000124608 AARS2 6 44267391 44281063 -1 protein_coding 57505 AARS2 1.64858013716987e-07 -0.047317547 0 0 0 NA NA NA NA Yes IMR90 6.0256e-11 rs35441607 24 ENSG00000249481 SPATS1 6 44310397 44344904 1 protein_coding 221409 SPATS1 0.000191249661738644 -0.2829741 0 0 0 NA NA NA NA Yes IMR90 6.0256e-11 rs35441607 24 ENSG00000267849 AL133262.1 6 44400472 44400720 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.0256e-11 rs35441607 24 ENSG00000266619 MIR4642 6 44403378 44403459 1 miRNA 100616352 MIR4642 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.0256e-11 rs35441607 24 ENSG00000237530 RP3-449H6.1 6 44492996 44494491 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.0256e-11 rs35441607 24 ENSG00000196284 SUPT3H 6 44777054 45345690 -1 protein_coding 8464 SUPT3H 0.000109913332445794 0.190064401 0 0 0 NA NA NA NA Yes IMR90 NA rs35441607 24 ENSG00000219384 RP11-491H9.3 6 45126607 45127248 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.0256e-11 rs35441607 24 ENSG00000207769 MIR586 6 45165411 45165507 -1 miRNA 693171 MIR586 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.0256e-11 rs35441607 24 ENSG00000124813 RUNX2 6 45295894 45632086 1 protein_coding 860 RUNX2 0.995958899294884 -1.677375552 76 17.47 67 3.27170000000001e-310 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Substantia_nigra:GTEx/v6/Brain_Caudate_basal_ganglia NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.0256e-11 rs35441607 24 ENSG00000271857 RP1-244F24.1 6 45388816 45389742 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 6.0256e-11 rs35441607 24 ENSG00000261080 RP1-166H4.2 6 45541083 45544507 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.0256e-11 rs35441607 24 ENSG00000252738 RNU6-515P 6 45613841 45613912 1 snRNA NA RNU6-515P NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:Aorta:Left_Ventricle:Liver:Pancreas:Right_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 6.0256e-11 rs35441607 24 ENSG00000270484 RP3-399J4.4 6 95151748 95153527 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle 1.72982e-13 rs34756237 25 ENSG00000216853 RP3-399J4.1 6 95156458 95156897 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle 1.72982e-13 rs34756237 25 ENSG00000219627 CYCSP17 6 95952058 95952372 1 pseudogene 360172 CYCSP17 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.72982e-13 rs34756237 25 ENSG00000261366 MANEA-AS1 6 96023059 96025326 -1 antisense 101927288 MANEA-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm:Trophoblast-like_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000172469 MANEA 6 96025419 96057333 1 protein_coding 79694 MANEA 0.000414997365079232 0.893943952 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm:Trophoblast-like_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000219549 RP11-374I15.1 6 96077991 96080805 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.72982e-13 rs34756237 25 ENSG00000219941 KRT18P50 6 96438983 96440225 1 pseudogene 442236 KRT18P50 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.17794e-16 rs34756237 25 ENSG00000172461 FUT9 6 96463860 96663488 1 protein_coding 10690 FUT9 0.0813711620521245 5.37195294 0 0 167 6.63877e-06 1.06593e-14 GTEx/v8/Brain_Cerebellum NA Yes Liver:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.17794e-16 rs34756237 25 ENSG00000242560 RN7SL797P 6 96730443 96730737 1 misc_RNA 106481138 RN7SL797P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:hESC NA rs34756237 25 ENSG00000233797 UFL1-AS1 6 96806250 96969545 -1 antisense 100861530 UFL1-AS1 NA NA 153 14.03 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.17794e-16 rs34756237 25 ENSG00000014123 UFL1 6 96969471 97003152 1 protein_coding 23376 UFL1 1.9081642881261e-12 0.437845019 15 9.701 204 3.6189e-42 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Nerve_Tibial:GTEx/v7/Pancreas:GTEx/v7/Spleen:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Nerve_Tibial:GTEx/v6/Testis NA Yes GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.17794e-16 rs34756237 25 ENSG00000112214 FHL5 6 97010424 97064512 1 protein_coding 9457 FHL5 1.6770876188147e-08 -0.641947008 51 15.93 197 1.40133e-11 3.72399273765911e-09 PsychENCODE_eQTLs:BRAINEAC/FCTX:BRAINEAC/aveALL:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v7/Artery_Aorta NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.17794e-16 rs34756237 25 ENSG00000213183 RPS7P8 6 97096365 97096945 -1 pseudogene 442237 RPS7P8 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.72982e-13 rs34756237 25 ENSG00000207309 RNU4-70P 6 97097329 97097467 -1 snRNA 106480548 RNU4-70P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.72982e-13 rs34756237 25 ENSG00000219139 RP11-304C16.2 6 97101150 97102018 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.72982e-13 rs34756237 25 ENSG00000217331 RP11-304C16.3 6 97120005 97120845 -1 pseudogene NA NA NA NA 0 0 110 6.00328e-07 0.00026300157 GTEx/v6/Artery_Tibial NA Yes Mesendoderm 1.72982e-13 rs34756237 25 ENSG00000216518 EEF1GP6 6 97198700 97199604 1 pseudogene 100421733 EEF1GP6 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000224384 RP3-417O22.3 6 97233013 97243697 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000112218 GPR63 6 97242002 97285353 -1 protein_coding 81491 GPR63 0.646359079516381 -0.770842853 0 0 171 4.22731e-06 7.09216e-07 GTEx/v8/Artery_Aorta NA Yes Adult_Cortex:Fetal_Cortex:Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000123545 NDUFAF4 6 97337189 97345757 -1 protein_coding 29078 NDUFAF4 0.382015184836328 1.062764881 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000263479 RN7SL509P 6 97362577 97362871 -1 misc_RNA 106479409 RN7SL509P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000186231 KLHL32 6 97372605 97588630 1 protein_coding 114792 KLHL32 0.509586628745803 -0.247134759 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000146263 MMS22L 6 97590037 97731093 -1 protein_coding 253714 MMS22L 0.671142491080048 -0.337966422 0 0 144 7.98217e-06 1.10912e-05 GTEx/v8/Pancreas:GTEx/v7/Pancreas NA Yes Mesendoderm 1.72982e-13 rs34756237 25 ENSG00000226684 RP3-418C23.2 6 97731179 97757924 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm 1.72982e-13 rs34756237 25 ENSG00000224849 RP1-104O17.1 6 98150157 98155979 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.72982e-13 rs34756237 25 ENSG00000242486 RP1-104O17.2 6 98155635 98180588 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.72982e-13 rs34756237 25 ENSG00000226207 RP1-104O17.3 6 98158829 98165073 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.72982e-13 rs34756237 25 ENSG00000271860 RP11-436D23.1 6 98264585 98847748 1 lincRNA 101927314 LOC101927314 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.72982e-13 rs34756237 25 ENSG00000235504 RP3-453D15.1 6 99006310 99006447 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000187472 RP11-67P15.1 6 99228133 99241868 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.72982e-13 rs34756237 25 ENSG00000184486 POU3F2 6 99282580 99286660 1 protein_coding 5454 POU3F2 NA -0.738809759 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.72982e-13 rs34756237 25 ENSG00000112234 FBXL4 6 99316420 99395849 -1 protein_coding 26235 FBXL4 0.0079087988593491 0.426985251 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.72982e-13 rs34756237 25 ENSG00000271042 RP3-364H10.1 6 99530325 99530637 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000265226 MIR548AI 6 99572485 99572572 1 miRNA 100616347 MIR548AI NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000232699 BDH2P1 6 99622620 99623357 1 pseudogene 389416 BDH2P1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.72982e-13 rs34756237 25 ENSG00000146267 FAXC 6 99719045 99797938 -1 protein_coding 84553 FAXC 0.872413322160328 2.483492824 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs34756237 25 ENSG00000132423 COQ3 6 99817276 99842080 -1 protein_coding 51805 COQ3 7.05935714539158e-10 0.497086499 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.72982e-13 rs34756237 25 ENSG00000132424 PNISR 6 99845927 99873207 -1 protein_coding 25957 PNISR 0.999085487307753 -0.653627928 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.72982e-13 rs34756237 25 ENSG00000228506 RP11-98I9.4 6 99872798 99879249 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.72982e-13 rs34756237 25 ENSG00000112238 PRDM13 6 100054606 100063454 1 protein_coding 59336 PRDM13 NA -0.647441691 0 0 0 NA NA NA NA Yes IMR90 1.72982e-13 rs34756237 25 ENSG00000146409 SLC18B1 6 133090509 133119701 -1 protein_coding 116843 SLC18B1 3.94675803740147e-10 0.973266142 0 0 16 7.7609e-08 0.000974242626451355 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000120265 PCMT1 6 150070579 150132556 1 protein_coding 5110 PCMT1 0.446383565895946 -0.308497206 0 0 4 6.44622e-06 0.000733970937291413 PsychENCODE_eQTLs NA No NA NA rs35193008 26 ENSG00000120256 LRP11 6 150139934 150186199 -1 protein_coding 84918 LRP11 0.100969715328085 -0.426574238 0 0 0 NA NA NA NA Yes Mesendoderm NA rs35193008 26 ENSG00000273132 RP11-350J20.12 6 150173598 150174328 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs35193008 26 ENSG00000268592 RP11-244K5.8 6 150183733 150240643 1 antisense 100652739 RAET1E-AS1 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs35193008 26 ENSG00000216906 RP11-350J20.9 6 150225379 150227554 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs35193008 26 ENSG00000215094 RP11-244K5.7 6 150272969 150273375 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs35193008 26 ENSG00000111981 ULBP1 6 150285143 150294846 1 protein_coding 80329 ULBP1 0.00017261233677896 3.534221376 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs35193008 26 ENSG00000213091 PHBP1 6 150363682 150364489 1 pseudogene 5246 PHBP1 NA NA 0 0 3 4.47468875864e-05 0.049 DICE/T_CD4_naive_TREG NA No NA NA rs35193008 26 ENSG00000131019 ULBP3 6 150384286 150390231 -1 protein_coding 79465 ULBP3 1.85029067408059e-08 NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs35193008 26 ENSG00000198729 PPP1R14C 6 150464212 150571493 1 protein_coding 81706 PPP1R14C 0.00467814206611273 2.066201557 0 0 8 1.83221e-05 9.9502e-10 GTEx/v7/Esophagus_Mucosa NA Yes IMR90:Mesenchymal_Stem_Cell 9.2683e-11 rs35193008 26 ENSG00000238594 snoU13 6 150485720 150485822 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm NA rs35193008 26 ENSG00000009765 IYD 6 150690028 150727105 1 protein_coding 389434 IYD 0.0883091920429625 8.246715004 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.2683e-11 rs35193008 26 ENSG00000220598 SSR1P1 6 150705443 150706256 -1 pseudogene 100420476 SSR1P1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.2683e-11 rs35193008 26 ENSG00000219622 RP11-291C6.1 6 150825947 150831436 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs35193008 26 ENSG00000120278 PLEKHG1 6 150920999 151164799 1 protein_coding 57480 PLEKHG1 0.000178677408303547 1.445662511 23 17.23 19 3.03518e-09 2.81306e-10 GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v7/Testis:GTEx/v6/Testis NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 9.2683e-11 rs35193008 26 ENSG00000232891 RP11-136K14.1 6 150921970 150926986 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs35193008 26 ENSG00000224029 RP11-136K14.2 6 150945813 150947222 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs35193008 26 ENSG00000226599 RP11-136K14.3 6 150971908 150973161 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs35193008 26 ENSG00000131016 AKAP12 6 151561134 151679692 1 protein_coding 9590 AKAP12 0.37250182178499 0.743186391 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs35193008 26 ENSG00000120262 CCDC170 6 151815165 151942328 1 protein_coding 80129 CCDC170 1.02112361613873e-19 1.380677467 0 0 4 9.3345e-05 1.07963e-07 GTEx/v8/Skin_Sun_Exposed_Lower_leg NA Yes Mesenchymal_Stem_Cell NA rs35193008 26 ENSG00000164849 GPR146 7 1084212 1098897 1 protein_coding 115330 GPR146 0.00279412642316597 0.355400189 0 0 1 6.284e-06 0.0397482141594172 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000164855 TMEM184A 7 1581871 1600457 -1 protein_coding 202915 TMEM184A 8.88852476041576e-05 1.728933857 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs34320599 27 ENSG00000230487 PSMG3-AS1 7 1609709 1629262 1 lincRNA 114796 PSMG3-AS1 NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs34320599 27 ENSG00000271098 RP5-1125K23.1 7 2327550 2328063 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs34320599 27 ENSG00000230914 AC004840.8 7 2423756 2428232 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs34320599 27 ENSG00000271163 RP4-607J2.1 7 2433482 2433766 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs34320599 27 ENSG00000136213 CHST12 7 2443223 2474242 1 protein_coding 55501 CHST12 0.000240662916934188 NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs34320599 27 ENSG00000236734 GRIFIN 7 2514360 2516528 -1 processed_transcript 402635 GRIFIN NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs34320599 27 ENSG00000106012 IQCE 7 2598632 2654368 1 protein_coding 23288 IQCE 1.34472559079011e-25 2.676713009 0 0 0 NA NA NA NA Yes EP_links_oneway 1.63606e-08 rs34320599 27 ENSG00000136295 TTYH3 7 2671585 2704436 1 protein_coding 80727 TTYH3 0.979598759303839 0.801776288 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90 NA rs34320599 27 ENSG00000174945 AMZ1 7 2719156 2815134 1 protein_coding 155185 AMZ1 5.11962566427904e-18 5.082219754 61 10.22 126 1.42173e-12 1.14553e-28 PsychENCODE_eQTLs:CMC_SVA_cis:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Thyroid:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Thyroid:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Thyroid NA No NA 1.63606e-08 rs34320599 27 ENSG00000146535 GNA12 7 2767746 2883958 -1 protein_coding 2768 GNA12 0.908269982155965 -0.649008186 132 13.96 128 3.2836e-217 0 DICE/B_cell_naive:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Tibial:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Pancreas:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Tibial:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Spleen:GTEx/v6/Stomach NA Yes Promoter_anchored_loops 1.63606e-08 rs34320599 27 ENSG00000231357 AC006028.11 7 2875255 2875656 1 pseudogene NA NA NA NA 39 11.51 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell 1.63606e-08 rs34320599 27 ENSG00000228334 AC024028.1 7 3122886 3126055 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs34320599 27 ENSG00000217455 AC091801.1 7 3179868 3214287 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell NA rs34320599 27 ENSG00000231892 AC073316.2 7 3236258 3237888 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell NA rs34320599 27 ENSG00000236708 AC073316.1 7 3303664 3342084 -1 antisense NA NA NA NA 0 0 21 0.000266167 0.0195334821821264 PsychENCODE_eQTLs NA Yes Adult_Cortex:Mesenchymal_Stem_Cell NA rs34320599 27 ENSG00000146555 SDK1 7 3341080 4308632 1 protein_coding 221935 SDK1 0.00501599676743558 2.23970553 0 0 0 NA NA NA NA Yes Adult_Cortex:Mesenchymal_Stem_Cell NA rs34320599 27 ENSG00000211544 AC069286.1 7 3458699 3458781 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs34320599 27 ENSG00000261809 CYP3A54P 7 4551590 4551664 -1 pseudogene 106480749 CYP3A54P NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs34320599 27 ENSG00000238781 snoU13 7 4729111 4729214 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:IMR90 1.63606e-08 rs34320599 27 ENSG00000146530 VWDE 7 12370511 12443567 -1 protein_coding 221806 VWDE NA 0.876329658 0 0 4 4.2821e-06 0.0290280843290966 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000272537 GS1-166A23.1 7 16510809 16510998 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10237149 28 ENSG00000106541 AGR2 7 16831435 16873057 -1 protein_coding 10551 AGR2 0.335455070189878 1.047287649 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90 NA rs10237149 28 ENSG00000270593 RP11-455J15.1 7 16889581 16890349 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10237149 28 ENSG00000173467 AGR3 7 16899029 16921611 -1 protein_coding 155465 AGR3 3.84686825137146e-14 -0.021064647 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:hESC 1.76319e-09 rs10237149 28 ENSG00000232400 RAD17P1 7 16903891 16905932 -1 pseudogene 9207 RAD17P1 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10237149 28 ENSG00000227965 AC098592.6 7 16928245 16928509 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:hESC 1.76319e-09 rs10237149 28 ENSG00000223867 AC098592.7 7 16977849 16978181 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs10237149 28 ENSG00000232841 AC098592.8 7 17072713 17073102 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle 1.76319e-09 rs10237149 28 ENSG00000236039 AC019117.2 7 17474101 17500296 -1 lincRNA 101927630 LOC101927630 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:hESC 1.76319e-09 rs10237149 28 ENSG00000228675 AC006482.1 7 17719173 17720283 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Trophoblast-like_Cell:hESC NA rs10237149 28 ENSG00000071189 SNX13 7 17830385 17980124 -1 protein_coding 23161 SNX13 0.985321607862615 -1.391347733 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs10237149 28 ENSG00000236195 RNMTL1P2 7 18001702 18002652 1 pseudogene 100420223 RNMTL1P2 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10237149 28 ENSG00000265876 AC080080.1 7 18033058 18033123 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10237149 28 ENSG00000229937 PRPS1L1 7 18066405 18067486 -1 protein_coding 221823 PRPS1L1 NA -0.278445611 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs10237149 28 ENSG00000048052 HDAC9 7 18126572 19042039 1 protein_coding 9734 HDAC9 0.998375125074442 -0.115886844 54 18.39 0 NA NA NA NA No NA 1.76319e-09 rs10237149 28 ENSG00000221393 MIR1302-6 7 18166843 18166932 -1 miRNA 100302140 MIR1302-6 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:hESC NA rs10237149 28 ENSG00000223030 AC091697.1 7 18336962 18337059 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.76319e-09 rs10237149 28 ENSG00000222164 RN7SKP266 7 18847616 18847902 -1 misc_RNA 106479214 RN7SKP266 NA NA 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.76319e-09 rs10237149 28 ENSG00000226522 AC004744.3 7 18931719 18939056 -1 antisense NA NA NA NA 3 7.872 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.76319e-09 rs10237149 28 ENSG00000232492 NPM1P13 7 18988521 18989385 -1 pseudogene 10834 NPM1P13 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.76319e-09 rs10237149 28 ENSG00000122691 TWIST1 7 19060614 19157295 -1 protein_coding 7291 TWIST1 0.182033891254288 NA 0 0 51 1.91674e-10 2.01969e-22 GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Nerve_Tibial:GTEx/v7/Thyroid:GTEx/v6/Nerve_Tibial NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.76319e-09 rs10237149 28 ENSG00000232821 AC003986.6 7 19152097 19153894 1 antisense NA NA NA NA 0 0 2 2.59598e-05 0.037226 GTEx/v8/Nerve_Tibial:GTEx/v7/Nerve_Tibial NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.76319e-09 rs10237149 28 ENSG00000236536 AC003986.7 7 19159556 19161539 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.76319e-09 rs10237149 28 ENSG00000229533 AC003986.5 7 19183916 19185876 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.76319e-09 rs10237149 28 ENSG00000146618 FERD3L 7 19184405 19185044 -1 protein_coding 222894 FERD3L 0.258156359245349 -0.104378399 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.76319e-09 rs10237149 28 ENSG00000105849 TWISTNB 7 19735085 19748710 -1 protein_coding 221830 TWISTNB 0.309424388132866 0.540321346 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10237149 28 ENSG00000265932 MIR3146 7 19744981 19745059 -1 miRNA 100422967 MIR3146 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10237149 28 ENSG00000221576 AC004543.1 7 19759011 19759074 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10237149 28 ENSG00000271133 CTA-293F17.1 7 20367922 20371370 -1 antisense 101927811 LOC101927811 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm NA rs10237149 28 ENSG00000105855 ITGB8 7 20370325 20455377 1 protein_coding 3696 ITGB8 0.998351443978669 -0.643626623 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm NA rs10237149 28 ENSG00000200753 SNORD56 7 20416954 20417024 1 snoRNA 26793 SNORD56 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10237149 28 ENSG00000179460 EEF1A1P27 7 20621695 20622829 1 pseudogene 100130234 EEF1A1P27 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.76319e-09 rs10237149 28 ENSG00000231525 AC002486.2 7 20628613 20629708 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.76319e-09 rs10237149 28 ENSG00000164651 SP8 7 20823906 20826505 -1 protein_coding 221833 SP8 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs10237149 28 ENSG00000253028 SNORA31 7 52337133 52337265 -1 snoRNA 677814 SNORA31 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs74504435 29 ENSG00000221900 POM121L12 7 53103349 53104617 1 protein_coding 285877 POM121L12 8.97051067778844e-05 0.567571274 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs74504435 29 ENSG00000271194 RP11-476O21.1 7 53383842 53384433 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:Trophoblast-like_Cell NA rs74504435 29 ENSG00000132432 SEC61G 7 54819943 54827667 -1 protein_coding 23480 SEC61G 0.611529456532535 -0.079681294 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs74504435 29 ENSG00000234707 RP11-745C15.2 7 54827118 54872621 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs74504435 29 ENSG00000252054 SNORA73 7 54933511 54933717 1 snoRNA NA NA NA NA 6 11.09 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs74504435 29 ENSG00000218586 RP4-791C19.1 7 55001392 55005877 1 pseudogene NA NA NA NA 2 10.62 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Pancreas:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.48342e-09 rs74504435 29 ENSG00000146648 EGFR 7 55086714 55324313 1 protein_coding 1956 EGFR 0.998664530178053 0.199935946 0 0 24 6.56363e-42 1.06974141300483e-38 PsychENCODE_eQTLs:xQTLServer_eQTLs:CMC_SVA_cis:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Cerebellum NA Yes Liver:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.48342e-09 rs74504435 29 ENSG00000224057 EGFR-AS1 7 55247443 55256627 -1 antisense 100507500 EGFR-AS1 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Aorta:Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.48342e-09 rs74504435 29 ENSG00000237210 RP11-339F13.2 7 55311940 55313374 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC NA rs74504435 29 ENSG00000230564 CALM1P2 7 55327502 55327949 -1 pseudogene 804 CALM1P2 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.48342e-09 rs74504435 29 ENSG00000230936 RP11-775L16.1 7 55410009 55412651 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs74504435 29 ENSG00000132434 LANCL2 7 55433141 55501435 1 protein_coding 55915 LANCL2 0.786760146345929 0.706373899 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs74504435 29 ENSG00000154978 VOPP1 7 55503749 55640681 -1 protein_coding 81552 VOPP1 0.12531564122422 -1.35062659 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs74504435 29 ENSG00000223475 RP11-310H4.1 7 55640864 55656029 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs74504435 29 ENSG00000233977 RP11-310H4.2 7 55659767 55660886 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs74504435 29 ENSG00000231394 RP11-310H4.3 7 55661470 55662699 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs74504435 29 ENSG00000234844 CDC42P2 7 55705967 55706535 -1 pseudogene 643336 CDC42P2 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm NA rs74504435 29 ENSG00000235207 TUBBP6 7 55713313 55714644 1 pseudogene 442308 TUBBP6 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm NA rs74504435 29 ENSG00000252857 RNU6-389P 7 55753670 55753774 1 snRNA 106481301 RNU6-389P NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs74504435 29 ENSG00000227491 CCNJP1 7 56296327 56297475 -1 pseudogene 100128459 CCNJP1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs74504435 29 ENSG00000206818 RNU6-849P 7 79541420 79541524 -1 snRNA 106481449 RNU6-849P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle 1.6531e-09 rs5885249 30 ENSG00000075223 SEMA3C 7 80371854 80551675 -1 protein_coding 10512 SEMA3C 0.296856253558956 -0.134328866 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.6531e-09 rs5885249 30 ENSG00000232968 AC008163.6 7 81092352 81092929 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm 1.6531e-09 rs5885249 30 ENSG00000234113 AC008163.4 7 81157719 81191099 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.6531e-09 rs5885249 30 ENSG00000233491 AC010091.1 7 81205702 81255532 -1 lincRNA 100128317 LOC100128317 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.6531e-09 rs5885249 30 ENSG00000230196 AC010091.4 7 81240200 81240642 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.6531e-09 rs5885249 30 ENSG00000019991 HGF 7 81328322 81399754 -1 protein_coding 3082 HGF 0.994701028645709 -0.594138122 1 1.696 1 0.000515365 0.0338776588880327 PsychENCODE_eQTLs NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.6531e-09 rs5885249 30 ENSG00000263416 AC006145.1 7 81549519 81549586 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.6531e-09 rs5885249 30 ENSG00000223770 MIR1255B1 7 81638493 81659271 1 antisense 101927356 MIR1255B1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.6531e-09 rs5885249 30 ENSG00000221262 AC005159.1 7 81919393 81919478 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle 1.6531e-09 rs5885249 30 ENSG00000213530 MTHFD2P5 7 82219164 82220007 -1 pseudogene 442707 MTHFD2P5 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 1.6531e-09 rs5885249 30 ENSG00000228711 AC004006.2 7 82286351 82286727 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.6531e-09 rs5885249 30 ENSG00000170381 SEMA3E 7 82993222 83278326 -1 protein_coding 9723 SEMA3E 0.0304478723822677 2.23783954 0 0 0 NA NA NA NA Yes Left_Ventricle 1.6531e-09 rs5885249 30 ENSG00000265423 MIR4652 7 93346240 93346317 1 miRNA 100616206 MIR4652 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell 1.24165e-09 rs1917486 31 ENSG00000105825 TFPI2 7 93514709 93520303 -1 protein_coding 7980 TFPI2 0.237365841602754 0.765584643 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs1917486 31 ENSG00000234695 AC002076.10 7 93520225 93522913 1 antisense 105375401 LOC105375401 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs1917486 31 ENSG00000105829 BET1 7 93592074 93633694 -1 protein_coding 10282 BET1 0.00201119979865631 -0.882183043 0 0 0 NA NA NA NA Yes Left_Ventricle 1.24165e-09 rs1917486 31 ENSG00000203505 AC003079.1 7 95159502 95159787 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs1917486 31 ENSG00000158560 DYNC1I1 7 95401866 95739634 1 protein_coding 1780 DYNC1I1 0.0116377037964894 0.222836809 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.24165e-09 rs1917486 31 ENSG00000004864 SLC25A13 7 95749532 95951459 -1 protein_coding 10165 SLC25A13 1.9404630788689e-15 -0.814744518 0 0 9 2.5139e-06 0.00732771683132311 eQTLGen_cis_eQTLs NA Yes IMR90 1.24165e-09 rs1917486 31 ENSG00000208025 MIR591 7 95848974 95849068 -1 miRNA 693176 MIR591 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.24165e-09 rs1917486 31 ENSG00000237551 AC096775.2 7 95912669 95913116 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm 1.24165e-09 rs1917486 31 ENSG00000220987 AC084368.1 7 95936072 95936172 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs1917486 31 ENSG00000207045 RNU6-532P 7 95959950 95960056 1 snRNA 106481349 RNU6-532P NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs1917486 31 ENSG00000238385 AC004458.1 7 96097643 96097734 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.24165e-09 rs1917486 31 ENSG00000127922 SHFM1 7 96110938 96339203 -1 protein_coding 7979 SHFM1 0.418592332178749 -0.181498149 139 19.47 81 7.32165e-07 0.000826453 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Testis:GTEx/v7/Artery_Tibial:GTEx/v6/Artery_Tibial NA Yes Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.24165e-09 rs1917486 31 ENSG00000197851 C7orf76 7 96110938 96132835 -1 protein_coding 7979 C7orf76 NA 0.64260271 0 0 0 NA NA NA NA Yes Liver:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.24165e-09 rs1917486 31 ENSG00000272377 RP11-682N22.1 7 96251318 96293650 -1 lincRNA NA NA NA NA 9 4.782 1 3.78148e-05 1.83166e-11 GTEx/v7/Testis NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.24165e-09 rs1917486 31 ENSG00000227284 MARK2P10 7 96487494 96488930 1 pseudogene 402679 MARK2P10 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1917486 31 ENSG00000244318 RN7SL252P 7 96569382 96569676 -1 misc_RNA 106481832 RN7SL252P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.24165e-09 rs1917486 31 ENSG00000231764 DLX6-AS1 7 96584453 96643377 -1 antisense 285987 DLX6-AS1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.24165e-09 rs1917486 31 ENSG00000006377 DLX6 7 96634860 96640351 1 protein_coding 1750 DLX6 0.842830433475103 -0.587645777 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.24165e-09 rs1917486 31 ENSG00000271956 DLX6-AS2 7 96635695 96637022 -1 antisense 100873931 DLX6-AS2 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.24165e-09 rs1917486 31 ENSG00000105880 DLX5 7 96649704 96654409 -1 protein_coding 1749 DLX5 0.675979516490967 -0.062332056 0 0 114 3.47232e-07 3.26464e-07 GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v7/Lung NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.24165e-09 rs1917486 31 ENSG00000224475 AC073900.4 7 96830020 96830795 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm 1.24165e-09 rs1917486 31 ENSG00000006128 TAC1 7 97361220 97369784 1 protein_coding 6863 TAC1 0.877314614642078 -0.108548381 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm 1.24165e-09 rs1917486 31 ENSG00000229982 RP11-515K14.1 7 118520157 118521342 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs3801383 32 ENSG00000106025 TSPAN12 7 120427376 120498456 -1 protein_coding 23554 TSPAN12 0.554920625997523 -0.484230169 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell 6.13762e-13 rs3801383 32 ENSG00000202225 RNA5SP240 7 120621480 120621607 -1 rRNA 100873498 RNA5SP240 NA NA 0 0 0 NA NA NA NA Yes Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.13762e-13 rs3801383 32 ENSG00000106034 CPED1 7 120628731 120937498 1 protein_coding 79974 CPED1 8.34882400764031e-17 -0.463002305 0 0 20 6.621e-11 0 eQTLGen_cis_eQTLs:GTEx/v8/Artery_Tibial:GTEx/v7/Artery_Tibial NA Yes Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.13762e-13 rs3801383 32 ENSG00000234927 HMGN1P18 7 120690981 120691257 1 pseudogene 100874444 HMGN1P18 NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell 6.13762e-13 rs3801383 32 ENSG00000212628 RNA5SP241 7 120723754 120723867 -1 rRNA 100873499 RNA5SP241 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 6.13762e-13 rs3801383 32 ENSG00000207090 RNU6-517P 7 120835002 120835111 -1 snRNA 106479795 RNU6-517P NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 6.13762e-13 rs3801383 32 ENSG00000002745 WNT16 7 120965421 120981158 1 protein_coding 51384 WNT16 0.000185158701253108 -1.371594454 7 21 21 1.50799e-06 2.36564e-12 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v7/Adipose_Subcutaneous NA No NA 6.13762e-13 rs3801383 32 ENSG00000196937 FAM3C 7 120988905 121036418 -1 protein_coding 10447 FAM3C 0.00108107460535983 -0.534816188 17 9.876 21 1.26764e-11 1.49814e-46 PsychENCODE_eQTLs:GTEx/v8/Artery_Aorta:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Nerve_Tibial:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes GM12878:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 6.13762e-13 rs3801383 32 ENSG00000213310 CYCSP19 7 121038506 121038821 1 pseudogene 360174 CYCSP19 NA NA 5 6.616 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC NA rs3801383 32 ENSG00000227371 RP11-3L10.2 7 121059126 121059899 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC NA rs3801383 32 ENSG00000234985 RP11-3L10.3 7 121080888 121081315 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.13762e-13 rs3801383 32 ENSG00000221690 AC004875.1 7 121214723 121214808 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.13762e-13 rs3801383 32 ENSG00000252704 RN7SKP277 7 121376497 121376779 1 misc_RNA 106479219 RN7SKP277 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm 6.13762e-13 rs3801383 32 ENSG00000233272 PNPT1P2 7 121482422 121485185 -1 pseudogene 100533721 PNPT1P2 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 6.13762e-13 rs3801383 32 ENSG00000106278 PTPRZ1 7 121513143 121702090 1 protein_coding 5803 PTPRZ1 0.994707963074545 0.057263027 0 0 0 NA NA NA NA Yes Fetal_Cortex:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 6.13762e-13 rs3801383 32 ENSG00000008311 AASS 7 121715701 121784334 -1 protein_coding 10157 AASS 1.35531507533066e-06 0.03350552 0 0 0 NA NA NA NA Yes IMR90:hESC NA rs3801383 32 ENSG00000226636 RP5-1049N15.2 7 121799354 121802297 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:hESC NA rs3801383 32 ENSG00000227573 RP5-1166A24.1 7 122489800 122490406 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs3801383 32 ENSG00000243574 RP11-264K23.1 7 123914733 123927598 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle 6.13762e-13 rs3801383 32 ENSG00000085662 AKR1B1 7 134127102 134144036 -1 protein_coding 231 AKR1B1 1.07346253038348e-05 -0.077675574 0 0 4 3.7028e-06 0.0258276077451593 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000066777 ARFGEF1 8 68085747 68255912 -1 protein_coding 10565 ARFGEF1 0.999999909436541 NA 0 0 1 9.6719e-07 0.00794328995921538 eQTLGen_trans_eQTLs NA No NA 5.813e-09 rs55705857 33 ENSG00000168672 FAM84B 8 127564687 127570638 -1 protein_coding 157638 FAM84B 0.0156910063345731 -2.25776792 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs55705857 33 ENSG00000254010 RP11-103H7.5 8 127569141 127569678 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs55705857 33 ENSG00000254286 RP11-89K10.1 8 127570120 127725660 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs55705857 33 ENSG00000253543 RP11-89K10.2 8 127594876 127595251 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs55705857 33 ENSG00000212451 RNU11-4P 8 127683767 127683899 1 snRNA 106481174 RNU11-4P NA NA 0 0 0 NA NA NA NA Yes Right_Ventricle:IMR90:Mesenchymal_Stem_Cell 5.813e-09 rs55705857 33 ENSG00000253573 RP11-351C8.1 8 127779121 127802882 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000253438 PCAT1 8 127859300 128033259 1 lincRNA 100750225 PCAT1 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Pancreas:Right_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000253264 PCAT2 8 128084939 128094466 -1 lincRNA 103164619 PCAT2 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000224722 PRNCR1 8 128098508 128099755 -1 pseudogene 101867536 PRNCR1 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000254166 CASC19 8 128197880 128215467 -1 lincRNA 103164619 CASC19 NA NA 0 0 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000247844 CCAT1 8 128220111 128231333 -1 lincRNA 100507056 CCAT1 NA NA 0 0 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000246228 CASC8 8 128302062 128494384 -1 antisense 727677 CASC8 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000271509 RP11-382A18.3 8 128304478 128304685 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000253929 RP11-382A18.2 8 128351519 128404876 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs55705857 33 ENSG00000212993 POU5F1B 8 128426535 128432311 1 protein_coding 5462 POU5F1B 7.27271426587485e-07 6.130544184 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000249375 CASC11 8 128698588 128746213 -1 lincRNA 100270680 CASC11 NA NA 0 0 0 NA NA NA NA Yes Bladder:Left_Ventricle:Liver:Right_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000136997 MYC 8 128747680 128753674 1 protein_coding 4609 MYC NA -0.253124713 0 0 0 NA NA NA NA Yes Bladder:Left_Ventricle:Liver:Right_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000249859 PVT1 8 128806779 129113499 1 processed_transcript 5820 PVT1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell NA rs55705857 33 ENSG00000256655 TMEM75 8 128959126 128960591 -1 protein_coding 641384 TMEM75 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000221771 MIR1205 8 128972879 128972941 1 miRNA 100302161 MIR1205 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000207110 RNU1-106P 8 129011377 129011540 1 snRNA 106481624 RNU1-106P NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000222501 RNU4-25P 8 129022628 129022857 -1 snRNA 106481870 RNU4-25P NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000221176 MIR1207 8 129061398 129061484 1 miRNA 100302175 MIR1207 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000221261 MIR1208 8 129162362 129162434 1 miRNA 100302281 MIR1208 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000201782 RN7SKP226 8 129232750 129233049 1 misc_RNA 106480903 RN7SKP226 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000254275 RP11-89M16.1 8 129417515 129576925 -1 processed_transcript NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000221351 AC068570.1 8 129832040 129832124 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.813e-09 rs55705857 33 ENSG00000250400 LINC00977 8 130228713 130253496 -1 lincRNA 728724 LINC00977 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs55705857 33 ENSG00000253225 RP11-1057N3.2 8 130263213 130263384 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs55705857 33 ENSG00000229140 CCDC26 8 130363937 130692485 -1 lincRNA 137196 CCDC26 NA NA 6 16.75 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.813e-09 rs55705857 33 ENSG00000253926 RP11-26E5.1 8 130428195 130458098 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs55705857 33 ENSG00000263763 MIR3686 8 130496303 130496388 -1 miRNA 100500839 MIR3686 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs55705857 33 ENSG00000265513 hsa-mir-3673 8 130508088 130508189 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs55705857 33 ENSG00000266096 AC011652.2 8 130508468 130508569 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs55705857 33 ENSG00000265219 AC011652.1 8 130508758 130508857 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs55705857 33 ENSG00000265687 AC016178.1 8 130509216 130509296 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs55705857 33 ENSG00000264680 hsa-mir-3669 8 130509594 130509674 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs55705857 33 ENSG00000266387 AC016178.2 8 130509833 130509913 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs55705857 33 ENSG00000254223 RP11-419K12.1 8 130691381 130695925 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs55705857 33 ENSG00000153310 FAM49B 8 130851839 131029375 -1 protein_coding 51571 FAM49B 0.996856902184787 -1.608548785 0 0 1 5.91621e-06 0.00021693 GTEx/v8/Adipose_Subcutaneous:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Thyroid NA No NA NA rs55705857 33 ENSG00000104522 TSTA3 8 144694788 144700218 -1 protein_coding 7264 TSTA3 0.0049919240345017 NA 0 0 3 5.2665e-11 0 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000156345 CDK20 9 90581356 90589668 -1 protein_coding 23552 CDK20 7.19398847298015e-12 -0.875495614 0 0 1 7.129e-06 0.0440013797861331 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000196305 IARS 9 94972489 95056038 -1 protein_coding 3376 IARS 4.34508835544123e-09 0.221657331 0 0 4 5.8872e-06 0.0378240939693454 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000158079 PTPDC1 9 96793076 96872138 1 protein_coding 138639 PTPDC1 0.00209572239053366 -0.264987909 0 0 16 2.9699e-08 0.000381847554707005 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000136842 TMOD1 9 100263462 100364030 1 protein_coding 7111 TMOD1 0.856622011630374 0.280701734 0 0 3 9.5442e-11 0 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000119326 CTNNAL1 9 111704851 111775809 -1 protein_coding 8727 CTNNAL1 2.30659700336349e-06 NA 0 0 1 4.1532e-07 0.00375776059252805 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000243444 PALM2 9 112403068 112713755 1 protein_coding 114299 PALM2 0.00389317095880877 NA 0 0 22 NA 0.049 CMC_NoSVA_cis NA No NA 3.58922e-11 rs72748148 34 ENSG00000188959 C9orf152 9 112952328 112970469 -1 protein_coding 401546 C9orf152 0.00474768063508639 0.733355841 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 3.58922e-11 rs72748148 34 ENSG00000136810 TXN 9 113006091 113018920 -1 protein_coding 7295 TXN 0.417886376366376 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.58922e-11 rs72748148 34 ENSG00000204193 TXNDC8 9 113065801 113100127 -1 protein_coding 255220 TXNDC8 0.835982582435059 -0.168694035 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.58922e-11 rs72748148 34 ENSG00000165124 SVEP1 9 113127531 113342160 -1 protein_coding 79987 SVEP1 0.589007650495336 0.071750071 0 0 0 NA NA NA NA Yes IMR90 3.58922e-11 rs72748148 34 ENSG00000206658 RNU6-1039P 9 113131872 113131978 -1 snRNA 106481931 RNU6-1039P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.58922e-11 rs72748148 34 ENSG00000212254 RNU6-124P 9 113301970 113302078 -1 snRNA NA RNU6-124P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.58922e-11 rs72748148 34 ENSG00000232896 RP11-410K21.2 9 113361755 113367499 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.58922e-11 rs72748148 34 ENSG00000030304 MUSK 9 113431051 113563859 1 protein_coding 4593 MUSK 8.17346413889496e-05 -0.03812498 0 0 0 NA NA NA NA Yes Aorta:Hippocampus:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.58922e-11 rs72748148 34 ENSG00000223918 RP13-461N9.2 9 113489736 113489959 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 3.58922e-11 rs72748148 34 ENSG00000198121 LPAR1 9 113635543 113800981 -1 protein_coding 1902 LPAR1 0.00141898105564211 0.680565103 75 16.43 67 6.8503e-51 0 eQTLGen_cis_eQTLs:GTEx/v8/Artery_Tibial:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung NA Yes Adult_Cortex:Fetal_Cortex:Aorta:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.58922e-11 rs72748148 34 ENSG00000206923 RNU6-432P 9 113665617 113665725 1 snRNA 106479757 RNU6-432P NA NA 23 16.43 0 NA NA NA NA Yes Aorta:Hippocampus:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.52533e-09 rs72748148 34 ENSG00000207401 Y_RNA 9 113696686 113696787 1 misc_RNA NA NA NA NA 12 11.23 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.58922e-11 rs72748148 34 ENSG00000212409 RNY4P18 9 113859605 113859693 -1 misc_RNA 100379298 RNY4P18 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.58922e-11 rs72748148 34 ENSG00000227531 RP11-202G18.1 9 113901526 114047116 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Dorsolateral_Prefrontal_Cortex:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 3.58922e-11 rs72748148 34 ENSG00000171133 OR2K2 9 114089763 114090800 -1 protein_coding 26248 OR2K2 0.00146151785432729 -0.098728981 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.58922e-11 rs72748148 34 ENSG00000136813 KIAA0368 9 114122972 114247025 -1 protein_coding 23392 KIAA0368 0.999999935694415 -0.731759067 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 3.58922e-11 rs72748148 34 ENSG00000223238 RNA5SP294 9 114173924 114174022 -1 rRNA 100873547 RNA5SP294 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.58922e-11 rs72748148 34 ENSG00000173258 ZNF483 9 114287439 114340124 1 protein_coding 158399 ZNF483 0.413497358830604 0.515672277 0 0 2 6.71953e-05 0.000906278 GTEx/v8/Pancreas NA Yes Adult_Cortex:IMR90:Mesenchymal_Stem_Cell 3.58922e-11 rs72748148 34 ENSG00000106853 PTGR1 9 114312002 114362135 -1 protein_coding 22949 PTGR1 0.0442771156840298 -0.070576229 0 0 36 3.19002e-06 2.00116e-19 PsychENCODE_eQTLs:CMC_SVA_cis:GTEx/v7/Brain_Hippocampus:GTEx/v7/Muscle_Skeletal NA Yes Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell 3.58922e-11 rs72748148 34 ENSG00000224644 RP11-16L21.7 9 114336472 114337707 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 3.58922e-11 rs72748148 34 ENSG00000204173 LRRC37A5P 9 114353872 114393569 -1 pseudogene 652972 LRRC37A5P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 3.58922e-11 rs72748148 34 ENSG00000059769 DNAJC25 9 114393632 114432508 1 protein_coding 548645 DNAJC25 0.00562063467846135 0.425425557 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 3.58922e-11 rs72748148 34 ENSG00000244115 DNAJC25-GNG10 9 114393666 114432509 1 protein_coding 552891 DNAJC25-GNG10 0.00277817399396608 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 3.58922e-11 rs72748148 34 ENSG00000165181 C9orf84 9 114448453 114557288 -1 protein_coding 158401 C9orf84 4.96930426660693e-16 -0.391030934 0 0 1 9.11346e-06 0.0305698 GTEx/v8/Prostate NA No NA NA rs72748148 34 ENSG00000266315 MIR4668 9 114694380 114694449 1 miRNA 100616114 MIR4668 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 3.58922e-11 rs72748148 34 ENSG00000271631 RP11-408O19.5 9 115647438 115648047 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex 3.58922e-11 rs72748148 34 ENSG00000252537 SNORA31 10 16047807 16047922 1 snoRNA 677814 SNORA31 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm NA rs10430578 35 ENSG00000237913 FTLP19 10 16113415 16113808 -1 pseudogene 100873960 FTLP19 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10430578 35 ENSG00000226140 RP11-461K13.1 10 16320700 16337857 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm NA rs10430578 35 ENSG00000165985 C1QL3 10 16555742 16564004 -1 protein_coding 389941 C1QL3 0.718803251749119 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs10430578 35 ENSG00000148484 RSU1 10 16632610 16859527 -1 protein_coding 6251 RSU1 0.0477656793520055 1.436546813 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs10430578 35 ENSG00000225213 RP11-197M22.2 10 16763351 16790376 -1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs10430578 35 ENSG00000107614 TRDMT1 10 17184253 17244053 -1 protein_coding 1787 TRDMT1 1.67244828325926e-06 0.7953312 0 0 2 4.8079e-06 0.0158071779364335 PsychENCODE_eQTLs:eQTLGen_trans_eQTLs NA No NA 1.77746e-09 rs10508552;rs62064364 35:57 ENSG00000148488 ST8SIA6 10 17360382 17496329 -1 protein_coding 338596 ST8SIA6 2.70748990652578e-08 0.520921374 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs10430578 35 ENSG00000204832 ST8SIA6-AS1 10 17428935 17455502 1 antisense 100128098 ST8SIA6-AS1 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs10430578 35 ENSG00000236582 PRPF38AP2 10 17619361 17620211 1 pseudogene 100131947 PRPF38AP2 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs10430578 35 ENSG00000165996 PTPLA 10 17631958 17659376 -1 protein_coding 9200 PTPLA 0.278082271575576 NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm:hESC NA rs10430578 35 ENSG00000260589 RP11-390B4.5 10 17683283 17685877 -1 antisense 102723166 STAM-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90:hESC NA rs10430578 35 ENSG00000136738 STAM 10 17686124 17757913 1 protein_coding 8027 STAM 0.902578080850864 0.025607504 0 0 0 NA NA NA NA Yes IMR90:hESC NA rs10430578 35 ENSG00000251959 snoR442 10 17721187 17721296 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes hESC NA rs10430578 35 ENSG00000229190 RP11-390B4.3 10 17737708 17742231 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes hESC NA rs10430578 35 ENSG00000183748 MRC1L1 10 17851362 17953178 1 protein_coding 4360 MRC1 NA NA 0 0 14 6.5337e-50 5.8078e-41 PsychENCODE_eQTLs:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Hippocampus:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid NA No NA 1.23595e-13 rs10508552;rs10430578 35 ENSG00000120586 MRC1 10 18098352 18200091 1 protein_coding 4360 MRC1 0.975871402342468 -0.539742965 0 0 14 1.7122e-60 1.35715e-51 PsychENCODE_eQTLs:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Prostate:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid NA No NA 1.23595e-13 rs10508552;rs10430578 35 ENSG00000148482 SLC39A12 10 18240768 18332221 1 protein_coding 221074 SLC39A12 0.000292985871332697 0.126473059 8 5.691 5 0.00033974 0.009 PsychENCODE_eQTLs:CMC_SVA_cis NA Yes EP_correlation_cell_type_oneway:EP_correlation_organ_oneway 1.23595e-13 rs10430578;rs10508552 35 ENSG00000226083 SLC39A12-AS1 10 18290715 18299491 -1 antisense 100129213 SLC39A12-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs10430578 35 ENSG00000165995 CACNB2 10 18429606 18830798 1 protein_coding 783 CACNB2 0.00182033784193924 -0.04239392 0 0 0 NA NA NA NA Yes EP_correlation_cell_type_oneway:IMR90:Mesendoderm:hESC NA rs10430578 35 ENSG00000235020 RP11-109I13.2 10 18523097 18550123 -1 processed_transcript NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm NA rs10430578 35 ENSG00000240291 RP11-499P20.2 10 18802044 18834580 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm NA rs10430578 35 ENSG00000225527 RP11-383B4.4 10 18820778 18822265 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm NA rs10430578 35 ENSG00000241058 NSUN6 10 18834490 18940551 -1 protein_coding 221078 NSUN6 1.72775122895768e-14 -0.298655594 0 0 0 NA NA NA NA Yes IMR90 NA rs10430578 35 ENSG00000271786 RP11-139J15.7 10 18931405 18944123 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs10430578 35 ENSG00000152487 ARL5B-AS1 10 18940195 18948214 -1 lincRNA 221078 ARL5B-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs10430578 35 ENSG00000165997 ARL5B 10 18948334 18970568 1 protein_coding 221079 ARL5B 0.463976138130045 0.319437506 0 0 15 2.9284e-07 0.00275846346745697 eQTLGen_trans_eQTLs NA Yes IMR90 NA rs62064364;rs10430578 35:57 ENSG00000234813 RP11-288D15.1 10 19229430 19229882 1 pseudogene NA NA NA NA 0 0 1 0.000425165 0.0289165215753178 PsychENCODE_eQTLs NA Yes Mesenchymal_Stem_Cell NA rs10430578 35 ENSG00000204740 MALRD1 10 19492779 20079330 1 protein_coding 340895 MALRD1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs10430578 35 ENSG00000227734 RP11-49L2.1 10 19579152 19580409 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10430578 35 ENSG00000228339 AMD1P1 10 20638978 20640029 1 pseudogene 100133024 AMD1P1 NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs10430578 35 ENSG00000232805 NIP7P1 10 94866629 94867140 -1 pseudogene 389997 NIP7P1 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs2274224 36 ENSG00000186188 FFAR4 10 95326422 95364237 1 protein_coding 338557 FFAR4 0.0055724932654211 2.243003875 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000138207 RBP4 10 95351444 95361501 -1 protein_coding 5950 RBP4 0.57861895575558 -0.611735994 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs2274224 36 ENSG00000221352 AL356214.1 10 95368343 95368456 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs2274224 36 ENSG00000095464 PDE6C 10 95372345 95425767 1 protein_coding 5146 PDE6C 7.4249966167879e-08 0.073360413 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs2274224 36 ENSG00000108231 LGI1 10 95517566 95557916 1 protein_coding 9211 LGI1 0.997175814162011 -0.476433397 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000227995 RAB11AP1 10 95641050 95641695 -1 pseudogene 100129731 RAB11AP1 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000176273 SLC35G1 10 95653730 95715819 1 protein_coding 159371 SLC35G1 0.917135938028142 -0.68831192 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000180764 PIPSL 10 95717948 95721297 -1 pseudogene 266971 PIPSL NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000138193 PLCE1 10 95753746 96092580 1 protein_coding 51196 PLCE1 0.204555596267865 NA 24 17.48 23 2.18344e-08 1.91043e-25 DICE/NK:BIOSQTL/BIOS_eQTL_geneLevel:CMC_NoSVA_cis:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Lung:GTEx/v7/Skin_Sun_Exposed_Lower_leg NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000252895 RNY4P26 10 95806795 95806882 -1 misc_RNA 100873819 RNY4P26 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 9.22571e-26 rs2274224 36 ENSG00000232913 RP11-429H9.4 10 95841707 95868571 -1 antisense 101927049 PLCE1-AS2 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000231575 RP11-162K11.4 10 95868873 95880864 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000234724 HDAC1P1 10 95897505 95899257 1 pseudogene 100419595 HDAC1P1 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000206631 RNU6-657P 10 95915396 95915502 -1 snRNA 106481389 RNU6-657P NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000228553 RP11-391J2.3 10 95984917 95987045 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000268894 PLCE1-AS1 10 96039034 96046828 -1 antisense 100128054 PLCE1-AS1 NA NA 9 17.35 23 4.98248e-30 3.86001e-30 GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Artery_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000273450 RP11-76P2.4 10 96074664 96075084 -1 antisense NA NA NA NA 4 17.48 23 6.97034e-09 9.37816e-08 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Transverse:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v7/Colon_Transverse:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Spleen:GTEx/v6/Nerve_Tibial NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000173145 NOC3L 10 96075004 96122716 -1 protein_coding 64318 NOC3L 1.14013419227493e-06 1.122626106 4 17.48 23 1.222e-248 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adrenal_Gland:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v6/Adrenal_Gland:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000108239 TBC1D12 10 96162261 96295687 1 protein_coding 23232 TBC1D12 0.00264365020875562 0.292901819 0 0 15 7.5437e-24 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Thyroid:GTEx/v6/Thyroid NA Yes Aorta:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000119969 HELLS 10 96305547 96373662 1 protein_coding 3070 HELLS 0.999418431126719 0.065854322 0 0 23 1.5774e-32 0 eQTLGen_cis_eQTLs NA Yes Aorta:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.22571e-26 rs2274224 36 ENSG00000244332 RP11-119K6.6 10 96337196 96370995 1 sense_overlapping NA NA NA NA 0 0 0 NA NA NA NA Yes hESC NA rs2274224 36 ENSG00000108242 CYP2C18 10 96443251 96495947 1 protein_coding 1562 CYP2C18 5.267291853526e-08 0.613728973 0 0 4 5.36851e-05 1.52033e-16 GTEx/v8/Esophagus_Mucosa:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic NA No NA NA rs2274224 36 ENSG00000138109 CYP2C9 10 96698415 96749147 1 protein_coding 1559 CYP2C9 2.53599347417585e-08 0.077353466 0 0 2 0.000131607 0.0239192 GTEx/v8/Colon_Transverse NA No NA 9.22571e-26 rs2274224 36 ENSG00000233377 MTND4P20 10 96700010 96700878 -1 pseudogene 100873352 MTND4P20 NA NA 0 0 1 0.000139292 0.0452717 GTEx/v8/Colon_Transverse NA No NA NA rs2274224 36 ENSG00000138115 CYP2C8 10 96796530 96829254 -1 protein_coding 1558 CYP2C8 5.35039546572966e-12 0.073211053 0 0 12 0.00020384 5.87392e-21 BRAINEAC/TCTX:GTEx/v8/Muscle_Skeletal NA No NA 9.22571e-26 rs2274224 36 ENSG00000107438 PDLIM1 10 96997329 97050781 -1 protein_coding 9124 PDLIM1 1.38008290255861e-05 NA 0 0 0 NA NA NA NA Yes hESC NA rs2274224 36 ENSG00000151640 DPYSL4 10 134000404 134019280 1 protein_coding 10570 DPYSL4 5.85788198919438e-06 NA 0 0 11 2.6687e-06 0.00765318479050618 eQTLGen_cis_eQTLs NA No NA NA rs7080018 37 ENSG00000165752 STK32C 10 134020996 134145351 -1 protein_coding 282974 STK32C 0.309709769270868 NA 0 0 67 4.2071e-15 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA 9.24698e-25 rs7080018 37 ENSG00000148814 LRRC27 10 134145614 134195010 1 protein_coding 80313 LRRC27 9.74868422732027e-14 3.271150154 0 0 4 2.23321e-05 0.0141137343076635 BIOSQTL/BIOS_eQTL_geneLevel NA No NA NA rs7080018 37 ENSG00000171813 PWWP2B 10 134210672 134231367 1 protein_coding 170394 PWWP2B 0.71615388692527 -0.813382879 0 0 62 7.8486e-15 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA 9.24698e-25 rs7080018 37 ENSG00000234311 RP11-432J24.3 10 134247237 134254988 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs7080018 37 ENSG00000180066 C10orf91 10 134257831 134262912 1 protein_coding 170393 C10orf91 0.0743076347528587 NA 0 0 0 NA NA NA NA Yes IMR90 NA rs7080018 37 ENSG00000226900 RP11-432J24.5 10 134325130 134331695 -1 lincRNA NA NA NA NA 20 9.721 68 3.0974e-12 2.48405e-08 PsychENCODE_eQTLs:DICE/T_CD8_naive:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Muscle_Skeletal:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Muscle_Skeletal:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Testis NA Yes IMR90 9.24698e-25 rs7080018 37 ENSG00000229081 LINC01165 10 134334331 134335953 -1 antisense 100128830 LINC01165 NA NA 5 3.896 74 1.0472e-37 3.14711e-31 PsychENCODE_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Thyroid:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts NA Yes IMR90 9.24698e-25 rs7080018 37 ENSG00000068383 INPP5A 10 134351324 134596979 1 protein_coding 3632 INPP5A 0.942238413616355 -0.925166011 0 0 74 5.07186e-59 2.83975e-51 PsychENCODE_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Thyroid:GTEx/v7/Artery_Tibial:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90 9.24698e-25 rs7080018 37 ENSG00000148826 NKX6-2 10 134598297 134599556 -1 protein_coding 84504 NKX6-2 0.0134613071846023 NA 0 0 2 2.94939511307e-05 0.049 DICE/T_CD8_naive NA No NA NA rs7080018 37 ENSG00000166917 MIR202HG 10 135059982 135061395 -1 antisense 101927671 MIR202HG NA NA 0 0 3 5.05189336632e-05 0.049 DICE/T_CD8_naive NA No NA NA rs7080018 37 ENSG00000254536 RP11-108K14.8 10 135204338 135233999 1 protein_coding NA NA NA NA 0 0 4 2.36443796665e-05 0.049 DICE/T_CD8_naive NA No NA NA rs7080018 37 ENSG00000148985 PGAP2 11 3818954 3847601 1 protein_coding 27315 PGAP2 0.15222416020635 -0.208488237 0 0 17 1.26e-08 0.00017555059048835 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000181963 OR52K2 11 4470525 4471591 1 protein_coding 119774 OR52K2 1.59479439547175e-06 0.257177682 0 0 1 9.1729e-07 0.00759518449642752 eQTLGen_trans_eQTLs NA No NA NA rs62158161 7 ENSG00000264984 MIR5691 11 9111859 9111926 -1 miRNA 100847015 MIR5691 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000213538 KRT8P41 11 9115910 9117737 1 pseudogene 283102 KRT8P41 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000166471 TMEM41B 11 9302201 9336327 -1 protein_coding 440026 TMEM41B 0.0201899312153953 2.395805058 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000254884 RP11-682B13.2 11 9332831 9333236 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000268403 AC132192.1 11 9481747 9482010 -1 protein_coding 644656 LOC644656 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000166478 ZNF143 11 9481866 9550071 1 protein_coding 7702 ZNF143 0.0219669962784504 -1.015518293 0 0 2 4.51018e-05 0.0208134 GTEx/v8/Muscle_Skeletal NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000238387 snoU13 11 9599575 9599678 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000243869 RN7SL56P 11 9602453 9602763 1 misc_RNA NA RN7SL56P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000243964 RP11-16F15.1 11 9627689 9628156 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000255463 RP11-16F15.4 11 9652555 9652906 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs61264398:rs10734655:rs11042933 38 ENSG00000239470 RP11-16F15.2 11 9681946 9682503 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs11042933:rs10734655:rs61264398 38 ENSG00000133789 SWAP70 11 9685624 9774538 1 protein_coding 23075 SWAP70 0.348844347370405 -0.389632948 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs11042933:rs10734655:rs61264398 38 ENSG00000201564 RN7SKP50 11 9702471 9702785 1 misc_RNA 106480459 RN7SKP50 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs11042933:rs10734655:rs61264398 38 ENSG00000245522 RP11-540A21.2 11 9776317 9781080 -1 lincRNA 440028 LOC440028 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000246273 SBF2-AS1 11 9779839 9832866 1 antisense 283104 SBF2-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000133812 SBF2 11 9800214 10315754 -1 protein_coding 81846 SBF2 0.380054089955573 0.210546538 0 0 5 1.02364e-05 0.00126764 GTEx/v8/Artery_Tibial:GTEx/v7/Artery_Tibial NA Yes IMR90:Mesenchymal_Stem_Cell 2.27719e-09 rs11042933;rs11042933:rs10734655 38 ENSG00000255476 RP11-1H15.2 11 9860690 9950810 1 antisense 101928008 LOC101928008 NA NA 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000252568 RNU7-28P 11 9865362 9865423 -1 snRNA 100147815 RNU7-28P NA NA 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000254765 RP11-1H15.1 11 9980291 9981337 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000254719 RP11-351I24.3 11 10293599 10293806 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 2.27719e-09 rs11042933:rs10734655 38 ENSG00000254554 RP11-351I24.1 11 10324204 10325251 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 2.47742e-11 rs11042933:rs10734655:rs61264398 38 ENSG00000148926 ADM 11 10326227 10328944 1 protein_coding 133 ADM 0.576630085865165 -1.2319735 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 2.47742e-11 rs11042933:rs10734655:rs61264398 38 ENSG00000133805 AMPD3 11 10329860 10529126 1 protein_coding 272 AMPD3 1.3313454680315e-08 0.348490889 29 21.3 27 0 0 PsychENCODE_eQTLs:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/PUTM:BRAINEAC/WHMT:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Colon_Sigmoid:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Stomach:GTEx/v6/Thyroid:GTEx/v6/Uterus NA Yes Adult_Cortex:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 2.47742e-11 rs61264398;rs11042933:rs10734655:rs61264398 38 ENSG00000221574 RNU6ATAC33P 11 10420739 10420864 -1 snRNA 106481170 RNU6ATAC33P NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.47742e-11 rs11042933:rs61264398:rs10734655 38 ENSG00000255823 MTRNR2L8 11 10529434 10530723 -1 protein_coding 100463486 MTRNR2L8 NA 0.745385028 0 0 6 2.59744e-05 0.0238147 GTEx/v8/Muscle_Skeletal NA Yes Aorta:Hippocampus:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.47742e-11 rs61264398;rs61264398:rs11042933:rs10734655 38 ENSG00000110315 RNF141 11 10533225 10562777 -1 protein_coding 50862 RNF141 0.00070215316465317 -0.118241395 0 0 30 1.3195e-09 8.17913e-20 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Muscle_Skeletal:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Muscle_Skeletal:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Aorta:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.47742e-11 rs61264398;rs11042933;rs10734655;rs61264398:rs11042933:rs10734655 38 ENSG00000177112 MRVI1-AS1 11 10562819 10621479 1 antisense 100129827 MRVI1-AS1 NA NA 0 0 4 2.00081e-05 0.0129006447969125 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Aorta:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.47742e-11 rs11042933;rs61264398:rs11042933:rs10734655 38 ENSG00000133800 LYVE1 11 10578513 10633236 -1 protein_coding 10894 LYVE1 4.22095940703122e-07 0.320011515 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.47742e-11 rs11042933:rs10734655:rs61264398 38 ENSG00000072952 MRVI1 11 10594638 10715535 -1 protein_coding 10335 MRVI1 0.00184121524712682 -0.670039603 23 18.43 38 7.10679020968e-25 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Substantia_nigra NA Yes Aorta:Left_Ventricle:Liver:Lung:Right_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 2.47742e-11 rs11042933;rs10734655;rs61264398;rs61264398:rs10734655:rs11042933 38 ENSG00000206858 Y_RNA 11 10747450 10747551 1 misc_RNA NA NA NA NA 8 9.585 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.47742e-11 rs11042933;rs61264398:rs11042933:rs10734655 38 ENSG00000198730 CTR9 11 10772534 10801290 1 protein_coding 9646 CTR9 0.999999446978789 -0.400595337 0 0 18 6.2191e-06 0.000602535 eQTLGen_cis_eQTLs:CMC_SVA_cis:GTEx/v8/Esophagus_Mucosa NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 2.47742e-11 rs11042933;rs61264398 38 ENSG00000255125 RP11-685M7.5 11 10804860 10823172 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.47742e-11 rs61264398 38 ENSG00000110321 EIF4G2 11 10818597 10830657 -1 protein_coding 1982 EIF4G2 NA -1.088470568 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.47742e-11 rs61264398 38 ENSG00000238622 SNORD97 11 10823014 10823155 -1 snoRNA 692223 SNORD97 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.47742e-11 rs61264398 38 ENSG00000246308 RP11-685M7.3 11 10830844 10844478 1 antisense 101928053 LOC101928053 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.47742e-11 rs61264398 38 ENSG00000236287 ZBED5 11 10833621 10880343 -1 protein_coding 58486 ZBED5 NA NA 0 0 9 6.6299e-11 0 eQTLGen_cis_eQTLs NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs11042933;rs61264398 38 ENSG00000247271 ZBED5-AS1 11 10879806 10928349 1 antisense 729013 ZBED5-AS1 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000270897 RP11-179A10.3 11 11203654 11203960 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle 2.47742e-11 rs61264398 38 ENSG00000110328 GALNT18 11 11292423 11643552 -1 protein_coding 374378 GALNT18 0.0476851755722948 0.02731886 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000254598 CSNK2A3 11 11373489 11374904 -1 protein_coding 283106 CSNK2A3 1.32371438961756e-11 0.570342565 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000255351 RP11-567I13.1 11 11373973 11374854 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000266645 MIR4299 11 11678198 11678269 -1 miRNA 100423026 MIR4299 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000268242 AC131935.1 11 11747060 11747257 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000255309 RP11-756D7.1 11 11780648 11780980 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.47742e-11 rs61264398 38 ENSG00000254486 RP13-631K18.2 11 12052422 12083332 1 lincRNA 105376554 LINC02547 NA NA 0 0 0 NA NA NA NA Yes IMR90 2.47742e-11 rs61264398 38 ENSG00000254991 RP13-631K18.3 11 12088476 12094561 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000255400 RP13-631K18.5 11 12108438 12110988 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000133816 MICAL2 11 12115543 12285334 1 protein_coding 9645 MICAL2 0.132223746243123 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000254680 RP11-265D17.2 11 12282973 12284720 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000133808 MICALCL 11 12297627 12380691 1 protein_coding 84953 MICALCL 5.41818008026451e-16 0.979153137 0 0 0 NA NA NA NA Yes IMR90 2.47742e-11 rs61264398:rs11042933:rs10734655 38 ENSG00000149534 MS4A2 11 59855734 59863444 1 protein_coding 2206 MS4A2 6.49875397938143e-05 0.294740671 0 0 1 4.5182e-06 0.0302229251393282 eQTLGen_trans_eQTLs NA No NA NA rs429358 61 ENSG00000255947 RP11-855O10.3 11 61422137 61423174 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs11230859 39 ENSG00000134780 DAGLA 11 61447905 61514473 1 protein_coding 747 DAGLA 0.953148342492449 -0.966158154 0 0 0 NA NA NA NA Yes Adult_Cortex NA rs11230859 39 ENSG00000134825 TMEM258 11 61535973 61560274 -1 protein_coding 746 TMEM258 0.000864646359600505 0.122739186 0 0 3 6.3257e-06 0.0180587988743189 eQTLGen_cis_eQTLs NA Yes IMR90 NA rs11230859 39 ENSG00000207601 MIR611 11 61559967 61560033 -1 miRNA 693196 MIR611 NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs11230859 39 ENSG00000168496 FEN1 11 61560109 61564716 1 protein_coding 2237 FEN1 3.47774227503768e-05 -0.45994024 0 0 0 NA NA NA NA Yes IMR90 NA rs11230859 39 ENSG00000134824 FADS2 11 61560452 61634826 1 protein_coding 9415 FADS2 0.990052486204972 -0.476245695 0 0 12 5.3567e-34 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes IMR90 3.93278e-09 rs11230859 39 ENSG00000149485 FADS1 11 61567099 61596790 -1 protein_coding 3992 FADS1 0.383801126989728 -0.763752724 0 0 12 5.8287e-15 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Artery_Tibial:GTEx/v8/Esophagus_Muscularis:GTEx/v7/Esophagus_Muscularis NA Yes IMR90 3.93278e-09 rs11230859 39 ENSG00000222326 MIR1908 11 61582633 61582712 -1 miRNA 100302263 MIR1908 NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:IMR90 NA rs11230859 39 ENSG00000221968 FADS3 11 61640991 61659523 -1 protein_coding 3995 FADS3 0.0488722447276726 NA 0 0 12 6.45198e-09 3.93319e-08 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood NA Yes Adult_Cortex 3.93278e-09 rs11230859 39 ENSG00000167994 RAB3IL1 11 61664773 61687741 -1 protein_coding 5866 RAB3IL1 0.000894540821499919 -0.364568465 0 0 7 2.5055e-25 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood NA Yes Spleen:IMR90 3.93278e-09 rs11230859 39 ENSG00000200898 RNU6-1243P 11 61705366 61705472 1 snRNA 106481573 RNU6-1243P NA NA 0 0 0 NA NA NA NA Yes Spleen:IMR90 NA rs11230859 39 ENSG00000167995 BEST1 11 61717293 61732987 1 protein_coding 7439 BEST1 4.88561552823397e-08 0.261397399 1 5.861 7 7.1357e-06 0.000458774 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg NA Yes Promoter_anchored_loops:Spleen:IMR90 3.93278e-09 rs11230859 39 ENSG00000167996 FTH1 11 61727190 61735132 -1 protein_coding 2495 FTH1 0.918437494529701 NA 2 5.861 5 4.85402e-06 0.00340665369843882 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes Promoter_anchored_loops:IMR90 3.93278e-09 rs11230859 39 ENSG00000269089 AP003733.1 11 61735453 61736755 1 protein_coding NA NA NA NA 2 5.861 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90 3.93278e-09 rs11230859 39 ENSG00000244176 RP11-810P12.1 11 61779223 61780074 -1 pseudogene NA NA NA NA 8 5.159 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90 3.93278e-09 rs11230859 39 ENSG00000254424 RP11-810P12.6 11 61840354 61840524 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Aorta:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 3.93278e-09 rs11230859 39 ENSG00000255553 RP11-810P12.5 11 61844749 61849656 -1 lincRNA 100507521 LOC100507521 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Aorta:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 3.93278e-09 rs11230859 39 ENSG00000236607 RP11-691L4.2 11 61936765 61937300 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs11230859 39 ENSG00000168515 SCGB1D1 11 61957688 61961011 1 protein_coding 10648 SCGB1D1 1.19495732132787e-05 0.599544717 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs11230859 39 ENSG00000124939 SCGB2A1 11 61976140 61981408 1 protein_coding 4246 SCGB2A1 0.0564012954624431 -0.285394902 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 3.93278e-09 rs11230859 39 ENSG00000254404 RP11-703H8.9 11 61980899 62028021 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs11230859 39 ENSG00000124935 SCGB1D2 11 62009682 62012280 1 protein_coding 10647 SCGB1D2 0.0961136812474541 0.413895139 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs11230859 39 ENSG00000110484 SCGB2A2 11 62037627 62040628 1 protein_coding 4250 SCGB2A2 0.00892427737697349 0.135576389 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs11230859 39 ENSG00000197745 SCGB1D4 11 62063754 62066536 -1 protein_coding 404552 SCGB1D4 0.00290219205998929 -0.07411136 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs11230859 39 ENSG00000162174 ASRGL1 11 62104920 62160882 1 protein_coding 80150 ASRGL1 0.000386788119196688 0.900304011 0 0 5 4.2821e-06 0.0122546067686378 eQTLGen_cis_eQTLs:GTEx/v7/Nerve_Tibial NA No NA 3.93278e-09 rs11230859 39 ENSG00000255446 CTD-2531D15.4 11 62189317 62194196 -1 antisense NA NA NA NA 0 0 1 1.5617e-05 0.0431404958677686 eQTLGen_cis_eQTLs NA No NA NA rs11230859 39 ENSG00000168569 TMEM223 11 62539101 62559493 -1 protein_coding 79064 TMEM223 0.0124355311633348 -0.202932198 0 0 5 NA 0.049 CMC_SVA_cis NA No NA NA rs11230859 39 ENSG00000269176 RP11-727F15.12 11 62553498 62554257 -1 antisense NA NA NA NA 0 0 3 9.67974e-07 0.00400954 GTEx/v7/Heart_Left_Ventricle NA No NA NA rs11230859 39 ENSG00000255717 SNHG1 11 62619460 62623386 -1 processed_transcript 23642 SNHG1 NA NA 0 0 1 0.000135007 4.08979e-06 GTEx/v8/Esophagus_Muscularis NA No NA NA rs11230859 39 ENSG00000173264 GPR137 11 64037534 64056972 1 protein_coding 56834 GPR137 0.484398269659545 NA 0 0 16 1.0384e-09 3.94710874284587e-05 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000174547 MRPL11 11 66202546 66234209 -1 protein_coding 65003 MRPL11 2.04235979758032e-05 -0.370834936 0 0 17 2.8896e-08 0.000383085310151761 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000069482 GAL 11 68451247 68458643 1 protein_coding 51083 GAL 0.000289003407059731 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs12417704 40 ENSG00000261625 RP11-554A11.4 11 68768233 68769516 -1 sense_overlapping NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs12417704 40 ENSG00000261276 RP11-554A11.5 11 68771862 68772568 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs12417704 40 ENSG00000172935 MRGPRF 11 68771863 68780877 -1 protein_coding 116535 MRGPRF 0.370675550581141 -0.628537393 0 0 0 NA NA NA NA Yes IMR90 NA rs12417704 40 ENSG00000256508 RP11-554A11.6 11 68779751 68785915 1 antisense 101928200 MRGPRF-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs12417704 40 ENSG00000261070 RP11-554A11.8 11 68914696 68939032 -1 lincRNA 338694 LOC338694 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs12417704 40 ENSG00000259799 RP11-554A11.9 11 68923378 68927220 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs12417704 40 ENSG00000110092 CCND1 11 69455855 69469242 1 protein_coding 595 CCND1 0.238186361767522 -0.876019048 0 0 0 NA NA NA NA Yes IMR90 NA rs12417704 40 ENSG00000256441 RP11-300I6.5 11 69552066 69552785 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs12417704 40 ENSG00000268351 AP001888.1 11 69587254 69587718 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs12417704 40 ENSG00000075388 FGF4 11 69587797 69590171 -1 protein_coding 2249 FGF4 0.750215677974647 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs12417704 40 ENSG00000186895 FGF3 11 69624992 69633792 -1 protein_coding 2248 FGF3 0.0330372169885067 NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90 6.30376e-09 rs12417704 40 ENSG00000255191 RP11-626H12.1 11 69831982 69861921 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC NA rs12417704 40 ENSG00000254605 RP11-626H12.2 11 69860964 69867165 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs12417704 40 ENSG00000248844 RP11-626H12.3 11 69902336 69911477 -1 lincRNA 101928443 LOC101928443 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs12417704 40 ENSG00000254417 ANO1-AS2 11 69918540 69921539 -1 antisense 100009613 ANO1-AS2 NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs12417704 40 ENSG00000202070 RNU6-1175P 11 69921469 69921575 1 snRNA 106480082 RNU6-1175P NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs12417704 40 ENSG00000131620 ANO1 11 69924408 70035634 1 protein_coding 55107 ANO1 0.993084640132559 -0.541337712 17 4.399 0 NA NA NA NA Yes IMR90 6.30376e-09 rs12417704 40 ENSG00000255143 RP11-805J14.3 11 69975403 69995729 1 sense_overlapping NA NA NA NA 17 4.399 0 NA NA NA NA No NA 6.30376e-09 rs12417704 40 ENSG00000168040 FADD 11 70049269 70053496 1 protein_coding 8772 FADD 0.665952895317945 -0.011248803 0 0 14 1.9116e-67 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA 6.30376e-09 rs12417704 40 ENSG00000254721 RP11-805J14.5 11 70052397 70053496 -1 antisense NA NA NA NA 0 0 14 7.08773e-22 0 BIOSQTL/BIOS_eQTL_geneLevel NA No NA 6.30376e-09 rs12417704 40 ENSG00000131626 PPFIA1 11 70116806 70230509 1 protein_coding 8500 PPFIA1 0.999999874338716 -0.013707682 0 0 14 2.3538e-11 0 eQTLGen_cis_eQTLs NA No NA 6.30376e-09 rs12417704 40 ENSG00000021300 PLEKHB1 11 73357223 73373864 1 protein_coding 58473 PLEKHB1 0.000703306678862264 0.059285195 0 0 11 6.8914e-07 0.00596114519427403 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000151376 ME3 11 86152150 86383678 -1 protein_coding 10873 ME3 1.1418824476976e-05 0.141730303 0 0 17 6.2175e-09 0.000135295112464062 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000254830 RP11-99C10.1 11 98809642 98815809 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle 6.18016e-11 rs10895201 41 ENSG00000266616 AP003558.1 11 99295669 99295736 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 6.18016e-11 rs10895201 41 ENSG00000255547 RPA2P3 11 100207588 100208357 1 pseudogene 100420359 RPA2P3 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:hESC 6.18016e-11 rs10895201 41 ENSG00000238388 snoU13 11 100805005 100805109 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 6.18016e-11 rs10895201 41 ENSG00000170647 TMEM133 11 100862811 100864663 1 protein_coding 143872 TMEM133 0.025317130805039 1.179604182 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:hESC 6.18016e-11 rs10895201 41 ENSG00000082175 PGR 11 100900355 101001255 -1 protein_coding 5241 PGR 0.884782623229294 -0.776802955 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 6.18016e-11 rs10895201 41 ENSG00000255504 RP11-788M5.3 11 101018881 101080322 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 6.18016e-11 rs10895201 41 ENSG00000137672 TRPC6 11 101322295 101743293 -1 protein_coding 7225 TRPC6 0.00456410505335574 -0.601879028 3 9.432 4 3.60801e-06 0.0045852 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum NA Yes Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.18016e-11 rs10895201 41 ENSG00000263885 MIR3920 11 101390551 101390636 -1 miRNA 100500823 MIR3920 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 6.18016e-11 rs10895201 41 ENSG00000254506 RP11-748H22.1 11 101455026 101465887 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.18016e-11 rs10895201 41 ENSG00000254534 RP11-748H22.2 11 101636666 101640692 -1 pseudogene NA NA NA NA 1 3.582 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.18016e-11 rs10895201 41 ENSG00000187151 ANGPTL5 11 101761405 101787253 -1 protein_coding 253935 ANGPTL5 1.75089935363839e-11 -0.352505795 1 2.416 5 5.23698e-07 3.7965e-18 GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v6/Heart_Atrial_Appendage NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.18016e-11 rs10895201 41 ENSG00000110318 KIAA1377 11 101785746 101871789 1 protein_coding 57562 KIAA1377 6.77476563137896e-13 -0.255570778 1 2.417 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs10895201 41 ENSG00000260008 RP11-732A21.2 11 101978617 101980573 1 sense_overlapping NA NA NA NA 0 0 1 6.96008e-05 0.00613375360440506 PsychENCODE_eQTLs NA No NA NA rs10895201 41 ENSG00000254422 RP11-864G5.3 11 102100582 102101653 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs10895201 41 ENSG00000110330 BIRC2 11 102217942 102249401 1 protein_coding 329 BIRC2 0.40445564763058 -0.586010073 0 0 2 5.6036e-07 0.00491493383742911 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000137673 MMP7 11 102391239 102401484 -1 protein_coding 4316 MMP7 1.6572045692897e-09 0.774618561 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.18016e-11 rs10895201 41 ENSG00000137674 MMP20 11 102447566 102496063 -1 protein_coding 9313 MMP20 1.62632042148573e-08 -0.436954275 0 0 0 NA NA NA NA Yes Mesendoderm:hESC NA rs10895201 41 ENSG00000256916 RP11-817J15.2 11 102477647 102498801 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.18016e-11 rs10895201 41 ENSG00000255798 RP11-817J15.3 11 102552041 102554644 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.18016e-11 rs10895201 41 ENSG00000137675 MMP27 11 102562218 102576537 -1 protein_coding 64066 MMP27 2.34681280025563e-10 0.775934898 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 6.18016e-11 rs10895201 41 ENSG00000118113 MMP8 11 102582526 102597781 -1 protein_coding 4317 MMP8 1.17621282658989e-19 1.673410402 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 6.18016e-11 rs10895201 41 ENSG00000234589 RP11-253E3.1 12 3180698 3181314 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 5.4275e-09 rs10774183 42 ENSG00000011105 TSPAN9 12 3186521 3395730 1 protein_coding 10867 TSPAN9 0.779777700780573 1.653562548 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 5.4275e-09 rs10774183 42 ENSG00000250770 RP5-1063M23.1 12 3405368 3409390 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.4275e-09 rs10774183 42 ENSG00000236908 RP5-1063M23.2 12 3427884 3434509 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.4275e-09 rs10774183 42 ENSG00000257048 RP11-476M19.2 12 3476999 3480512 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.4275e-09 rs10774183 42 ENSG00000111218 PRMT8 12 3490515 3703139 1 protein_coding 56341 PRMT8 0.95875274427484 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.4275e-09 rs10774183 42 ENSG00000196138 AC005831.1 12 3797876 3799650 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 5.4275e-09 rs10774183 42 ENSG00000111224 PARP11 12 3900213 3982608 -1 protein_coding 57097 PARP11 0.00015946555998602 1.511880733 0 0 4 4.2164e-10 0 eQTLGen_cis_eQTLs NA Yes Fetal_Cortex:Mesendoderm:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000256862 RP11-664D1.1 12 3980900 4019504 1 antisense NA NA NA NA 7 9.867 7 6.3441e-76 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes Fetal_Cortex:Mesendoderm:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000256969 RP11-320N7.2 12 4130143 4135824 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Lung:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000256356 HSPA8P5 12 4206617 4208685 1 pseudogene 399988 HSPA8P5 NA NA 0 0 6 9.89452e-07 0.00196069 GTEx/v8/Nerve_Tibial:GTEx/v7/Nerve_Tibial NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000242444 RP11-320N7.1 12 4218827 4227298 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000256164 CCND2-AS1 12 4357931 4385350 -1 antisense 103752584 CCND2-AS1 NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000255920 CCND2-AS2 12 4361901 4384231 -1 antisense 103752584 CCND2-AS2 NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000118971 CCND2 12 4382938 4414516 1 protein_coding 894 CCND2 0.949000818432094 -1.764614919 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000078237 C12orf5 12 4430371 4462338 1 protein_coding 57103 C12orf5 0.691296680522057 NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000213970 RP11-264F23.1 12 4433538 4433977 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000118972 FGF23 12 4477393 4488894 -1 protein_coding 8074 FGF23 0.0279896645640281 -1.415371809 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000111241 FGF6 12 4537321 4554780 -1 protein_coding 2251 FGF6 0.000705757813368273 -0.339394768 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.4275e-09 rs10774183 42 ENSG00000047621 C12orf4 12 4596894 4647674 -1 protein_coding 57102 C12orf4 9.82515157241538e-05 -0.753759504 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000111247 RAD51AP1 12 4647950 4669214 1 protein_coding 10635 RAD51AP1 0.0223532839828689 -0.11768739 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000010219 DYRK4 12 4671370 4723325 1 protein_coding 8798 DYRK4 3.79608758155986e-10 0.251196795 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000256748 RP11-234B24.5 12 4711157 4712586 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000272921 RP11-500M8.7 12 4714110 4771809 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.4275e-09 rs10774183 42 ENSG00000111254 AKAP3 12 4724674 4758213 -1 protein_coding 10566 AKAP3 0.0263329788992228 -0.311399819 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.4275e-09 rs10774183 42 ENSG00000256799 RP11-500M8.6 12 4744515 4745306 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.4275e-09 rs10774183 42 ENSG00000256381 RP11-500M8.4 12 4754662 4757193 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.4275e-09 rs10774183 42 ENSG00000139180 NDUFA9 12 4758261 4798454 1 protein_coding 4704 NDUFA9 0.542744183961533 0.984564152 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.4275e-09 rs10774183 42 ENSG00000255608 RP3-377H17.2 12 4948121 4951841 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.4275e-09 rs10774183 42 ENSG00000256115 RP11-319E16.1 12 5343163 5352317 -1 lincRNA 101929584 LINC02443 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 5.4275e-09 rs10774183 42 ENSG00000184574 LPAR5 12 6728001 6745613 -1 protein_coding 57121 LPAR5 0.0296429210794608 -0.58981202 0 0 1 3.639e-06 0.0255072463768116 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000152556 PFKM 12 48498922 48540187 1 protein_coding 5213 PFKM 6.03263003776653e-07 -0.654633168 0 0 14 4.2434e-10 2.11864406779661e-05 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000139637 C12orf10 12 53693470 53700961 1 protein_coding 60314 C12orf10 2.43605474737215e-06 -0.047708442 0 0 15 8.5179e-08 0.00103092783505155 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000135423 GLS2 12 56864736 56882198 -1 protein_coding 27165 GLS2 0.0009871223239844 -0.487382552 0 0 17 1.7918e-10 0 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000178498 DTX3 12 57998405 58003587 1 protein_coding 196403 DTX3 0.921137255195518 -1.003754956 0 0 16 1.0157e-10 0 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000223294 SNORD83 12 64969445 64969521 1 snoRNA NA NA NA NA 0 0 2 7.6914e-06 0.0218333830994327 eQTLGen_cis_eQTLs NA No NA 8.47227e-11 rs17178006 43 ENSG00000111490 TBC1D30 12 65174589 65274812 1 protein_coding 23329 TBC1D30 NA -0.289858143 0 0 2 3.3593e-09 2.59639101648708e-05 eQTLGen_cis_eQTLs NA Yes GM12878:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000243020 RPL7P39 12 65261736 65262479 -1 pseudogene 100271217 RPL7P39 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000255693 RP11-766N7.3 12 65277174 65371302 1 lincRNA 400046 LINC02389 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000248995 RP11-766N7.4 12 65314625 65376304 -1 lincRNA 109729131 LINC02231 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:hESC 8.47227e-11 rs17178006 43 ENSG00000221564 RNU6ATAC42P 12 65332803 65332897 1 snRNA 106481173 RNU6ATAC42P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000198671 RP11-168J19.2 12 65411248 65413586 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000156076 WIF1 12 65444406 65515346 -1 protein_coding 11197 WIF1 2.41723210239144e-05 -0.475964026 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000207099 RNU6-166P 12 65489529 65489635 1 snRNA 106481879 RNU6-166P NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000174106 LEMD3 12 65563351 65642107 1 protein_coding 23592 LEMD3 0.998968434807237 -0.755533028 0 0 2 6.3482e-62 0 eQTLGen_cis_eQTLs:GTEx/v8/Brain_Cerebellum:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Spleen:GTEx/v7/Brain_Cerebellum:GTEx/v7/Esophagus_Muscularis NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000174099 MSRB3 12 65672423 65882024 1 protein_coding 253827 MSRB3 0.00702679578516966 -0.542320782 2 18.91 0 NA NA NA NA No NA 8.47227e-11 rs17178006 43 ENSG00000215208 KRT18P60 12 65812511 65813807 -1 pseudogene 100418829 KRT18P60 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000250748 RP11-230G5.2 12 65860600 66036152 -1 lincRNA 105369187 LOC105369187 NA NA 1 4.485 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000255866 RP11-221N13.2 12 65953371 65954669 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000256268 RP11-221N13.3 12 65996649 66006777 1 lincRNA 105369807 LINC02454 NA NA 0 0 2 1.16408e-07 8.84352e-08 GTEx/v8/Cells_Cultured_fibroblasts NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000256915 RP11-221N13.4 12 66038114 66057079 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000213344 PCNPP3 12 66039772 66040242 -1 pseudogene 729298 PCNPP3 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000241749 RPSAP52 12 66151800 66220754 -1 pseudogene 204010 RPSAP52 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000149948 HMGA2 12 66217911 66360075 1 protein_coding 8091 HMGA2 0.733852103838821 0.335144422 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000197301 RP11-366L20.2 12 66245120 66275947 -1 protein_coding 100129940 LOC100129940 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000211577 AC090673.1 12 66251793 66251912 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000267942 AC090673.2 12 66291518 66317967 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000256083 RP11-366L20.3 12 66328557 66342259 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000256259 RP11-366L20.4 12 66421505 66424846 -1 lincRNA 105369810 LINC02425 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000213343 RP11-118B13.1 12 66431015 66431494 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000251857 RNA5SP362 12 66460001 66460118 1 rRNA 100873621 RNA5SP362 NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000139233 LLPH 12 66516842 66524548 -1 protein_coding 84298 LLPH 0.341447375249415 -0.966771455 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000228144 TMBIM4 12 66517697 66563765 -1 protein_coding 51643 TMBIM4 NA 0.682374742 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000155957 TMBIM4 12 66517709 66563852 -1 protein_coding 51643 TMBIM4 0.0020799620820819 0.682374742 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000239335 RP11-745O10.2 12 66524531 66528229 1 antisense 103625681 LLPH-DT NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000090376 IRAK3 12 66582659 66648402 1 protein_coding 11213 IRAK3 3.58183663944626e-15 0.930679823 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 8.47227e-11 rs17178006 43 ENSG00000225422 RBMS1P1 12 66627859 66629014 -1 pseudogene 5938 RBMS1P1 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000266539 AC078889.1 12 66629336 66629402 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000256072 RP11-335I12.2 12 66645525 66651214 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000256777 PDCL3P7 12 66669720 66670431 -1 pseudogene 390340 PDCL3P7 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000222744 RN7SKP166 12 66686463 66686767 1 misc_RNA 106481814 RN7SKP166 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000127311 HELB 12 66696325 66737423 1 protein_coding 92797 HELB 2.01687819135373e-13 -0.145583471 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000238528 snoU13 12 66739499 66739602 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000256420 OSBPL9P4 12 66957747 66962974 -1 pseudogene 100498661 OSBPL9P4 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 8.47227e-11 rs17178006 43 ENSG00000237766 GGTA2P 12 67659622 67660746 -1 pseudogene 121328 GGTA2P NA NA 0 0 0 NA NA NA NA Yes hESC 8.47227e-11 rs17178006 43 ENSG00000111530 CAND1 12 67663061 67713731 1 protein_coding 55832 CAND1 0.999927001146307 1.899711393 0 0 0 NA NA NA NA Yes hESC 8.47227e-11 rs17178006 43 ENSG00000198707 CEP290 12 88442793 88535993 -1 protein_coding 80184 CEP290 1.03912081117924e-34 -0.583026543 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000252747 RNA5SP364 12 88445478 88445555 1 rRNA 100873623 RNA5SP364 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.25654e-09 rs79426107 44 ENSG00000257752 RP11-474L23.3 12 88451653 88452355 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.25654e-09 rs79426107 44 ENSG00000139324 TMTC3 12 88536073 88593664 1 protein_coding 160418 TMTC3 0.00905213224625117 -1.978736188 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000199245 Y_RNA 12 88824219 88824327 1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:hESC NA rs79426107 44 ENSG00000049130 KITLG 12 88886570 88974628 -1 protein_coding 4254 KITLG 0.508530401642626 -0.184130758 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.25654e-09 rs79426107 44 ENSG00000252850 RNU1-117P 12 88975416 88975573 1 snRNA 106480189 RNU1-117P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.25654e-09 rs79426107 44 ENSG00000246363 RP11-13A1.1 12 89404458 89413456 -1 lincRNA 728084 LINC02458 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000257629 RP11-13A1.2 12 89421534 89422299 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000257156 RP11-13A1.3 12 89441964 89703330 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000238302 RNU7-120P 12 89676000 89676062 -1 snRNA 106480817 RNU7-120P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.25654e-09 rs79426107 44 ENSG00000257820 MRPS6P4 12 89713141 89713426 1 pseudogene 359782 MRPS6P4 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000139318 DUSP6 12 89741009 89747048 -1 protein_coding 1848 DUSP6 0.911205141065287 -0.308177435 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.25654e-09 rs79426107 44 ENSG00000271327 RP11-1109F11.3 12 89761584 89763078 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000271259 RP11-1109F11.5 12 89765597 89766136 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000139323 POC1B 12 89813495 89919801 -1 protein_coding 282809 POC1B 5.89427992774507e-05 -1.05252283 0 0 0 NA NA NA NA Yes EP_correlation_cell_type_oneway:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000226982 CENPCP1 12 89893870 89896447 1 pseudogene 1061 CENPCP1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000257594 GALNT4 12 89913185 89920039 -1 protein_coding 8693 GALNT4 0.112929757253281 0.062534855 0 0 57 3.1042e-13 0 eQTLGen_cis_eQTLs NA Yes EP_correlation_cell_type_oneway:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000259075 POC1B-GALNT4 12 89913185 89920039 -1 protein_coding 100528030 POC1B-GALNT4 0.0375964932909429 0.027960093 0 0 0 NA NA NA NA Yes EP_correlation_cell_type_oneway:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000270344 RP11-734K2.4 12 89919431 89934079 1 antisense NA NA NA NA 0 0 19 1.06601e-06 0.00518926 GTEx/v7/Brain_Anterior_cingulate_cortex_BA24 NA Yes EP_correlation_cell_type_oneway:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000258302 RP11-981P6.1 12 89954906 89987798 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000070961 ATP2B1 12 89981828 90103077 -1 protein_coding 490 ATP2B1 0.999997542188065 -1.817439247 0 0 1 6.20658e-05 1.11025e-08 GTEx/v7/Artery_Tibial NA Yes EP_correlation_cell_type_oneway:Adult_Cortex:Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000266347 AC068641.1 12 89986604 89986704 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:Pancreas:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000271614 LINC00936 12 90102736 90106367 1 lincRNA 338758 LINC00936 NA NA 0 0 0 NA NA NA NA Yes EP_correlation_cell_type_oneway:Adult_Cortex:Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000252207 RNA5SP365 12 90120713 90120819 1 rRNA 100873624 RNA5SP365 NA NA 0 0 0 NA NA NA NA Yes Aorta:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000257480 MRPL2P1 12 90146690 90147608 1 pseudogene 347894 MRPL2P1 NA NA 0 0 37 2.24873e-05 0.00225788843036669 PsychENCODE_eQTLs NA Yes Aorta:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000252823 RNU6-148P 12 90147836 90147929 1 snRNA 106479631 RNU6-148P NA NA 0 0 0 NA NA NA NA Yes Aorta:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000258216 RP11-654D12.2 12 90276442 90383066 1 lincRNA NA NA NA NA 36 20.3 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000258290 RP11-654D12.1 12 90313214 90313553 -1 pseudogene NA NA NA NA 6 6.122 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 5.25654e-09 rs79426107 44 ENSG00000257725 RP11-654D12.3 12 90341470 90343503 1 lincRNA 105369891 LINC02399 NA NA 5 4.389 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Pancreas:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000257194 RP11-567C2.1 12 90501516 90506556 1 lincRNA NA NA NA NA 6 3.217 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000258183 RP11-753N8.1 12 90674671 90694117 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000257995 RP11-632B21.1 12 91011536 91016599 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.25654e-09 rs79426107 44 ENSG00000257787 RP11-20L19.1 12 91203053 91204457 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000197651 CCER1 12 91299399 91348953 -1 protein_coding 196477 CCER1 4.84730770012203e-07 0.215532307 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000196243 LINC00615 12 91311800 91342446 1 lincRNA 439916 LINC00615 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000083782 EPYC 12 91357456 91398803 -1 protein_coding 1833 EPYC 5.0529732963996e-05 0.450787291 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.25654e-09 rs79426107 44 ENSG00000139330 KERA 12 91444268 91451760 -1 protein_coding 11081 KERA 0.000414369553245371 1.592390725 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.25654e-09 rs79426107 44 ENSG00000139329 LUM 12 91496406 91505608 -1 protein_coding 4060 LUM 0.101924740774409 0.839935967 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000011465 DCN 12 91539025 91576900 -1 protein_coding 1634 DCN 0.457565652637867 -0.442094907 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000258148 AC007115.3 12 91587486 91587719 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000258100 RP11-121E16.1 12 91755973 91762383 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000258125 RP11-1041F24.1 12 92073908 92074650 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:hESC NA rs79426107 44 ENSG00000257863 RP11-587P21.3 12 92295234 92299963 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 5.25654e-09 rs79426107 44 ENSG00000257242 C12orf79 12 92378756 92536690 -1 protein_coding 256021 C12orf79 NA -0.386906508 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs79426107 44 ENSG00000133639 BTG1 12 92536286 92539673 -1 protein_coding 694 BTG1 0.483157589180579 -0.280608723 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs79426107 44 ENSG00000245904 RP11-796E2.4 12 92539349 92583436 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs79426107 44 ENSG00000239201 RPL21P106 12 92562176 92562653 1 pseudogene 643264 RPL21P106 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.25654e-09 rs79426107 44 ENSG00000199895 Y_RNA 12 92564129 92564229 -1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 5.25654e-09 rs79426107 44 ENSG00000205057 CLLU1OS 12 92813870 92821924 -1 protein_coding 574016 CLLU1OS 0.0527318795262529 -0.150521907 0 0 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000266923 RP11-693J15.4 12 92815307 92877456 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000257127 CLLU1 12 92815307 92824778 1 protein_coding 574028 CLLU1 0.0413682841967756 NA 0 0 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000205056 RP11-693J15.5 12 92860227 92885867 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000258262 RP11-693J15.3 12 92924236 92925100 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell:Trophoblast-like_Cell 5.25654e-09 rs79426107 44 ENSG00000238865 snoU13 12 92938668 92938763 -1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:Mesenchymal_Stem_Cell:Trophoblast-like_Cell 5.25654e-09 rs79426107 44 ENSG00000214215 C12orf74 12 93096619 93102325 1 protein_coding 338809 C12orf74 0.000522237109268262 0.797510785 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000187510 PLEKHG7 12 93115281 93166231 1 protein_coding 440107 PLEKHG7 3.6750124896981e-11 0.109303388 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs79426107 44 ENSG00000102189 EEA1 12 93164413 93323107 -1 protein_coding 8411 EEA1 0.6973588149443 -0.177688935 0 0 0 NA NA NA NA Yes GM12878:Trophoblast-like_Cell NA rs79426107 44 ENSG00000202534 RNU6-1329P 12 93346415 93346521 1 snRNA 106481600 RNU6-1329P NA NA 0 0 0 NA NA NA NA Yes GM12878:Trophoblast-like_Cell NA rs79426107 44 ENSG00000136044 APPL2 12 105567074 105630016 -1 protein_coding 55198 APPL2 3.52822991386898e-09 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.04719e-08 rs12146713 45 ENSG00000235162 C12orf75 12 105629068 105789875 1 protein_coding 387882 C12orf75 NA -0.022410535 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.04719e-08 rs12146713 45 ENSG00000257642 RP11-474B16.1 12 105698645 105720795 -1 antisense 105369954 KCCAT198 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.04719e-08 rs12146713 45 ENSG00000264749 AC011313.1 12 105721684 105721770 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.04719e-08 rs12146713 45 ENSG00000257859 CASC18 12 106097981 106137840 1 lincRNA 101929110 CASC18 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Aorta:Left_Ventricle:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 3.04719e-08 rs12146713 45 ENSG00000257773 ST13P3 12 106409675 106410784 1 pseudogene 144638 ST13P3 NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 3.04719e-08 rs12146713 45 ENSG00000257890 RP11-114F10.2 12 106444739 106452032 -1 lincRNA NA NA NA NA 0 0 3 1.17029e-12 2.5096e-37 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cortex:GTEx/v8/Nerve_Tibial:GTEx/v8/Prostate:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Artery_Tibial:GTEx/v7/Nerve_Tibial:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes IMR90:Mesenchymal_Stem_Cell 3.04719e-08 rs12146713 45 ENSG00000074590 NUAK1 12 106457118 106533811 -1 protein_coding 9891 NUAK1 0.189029672518911 0.541314246 3 19.59 1 3.02566e-05 0.00196158 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Nerve_Tibial NA Yes Promoter_anchored_loops:Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 3.04719e-08 rs12146713 45 ENSG00000257438 RP11-114F10.3 12 106496941 106499943 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 3.04719e-08 rs12146713 45 ENSG00000257119 EEF1B2P4 12 107295061 107295762 -1 pseudogene 100130631 EEF1B2P4 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm 3.04719e-08 rs12146713 45 ENSG00000240631 RPL30P12 12 107304535 107304887 1 pseudogene 100271304 RPL30P12 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm 3.04719e-08 rs12146713 45 ENSG00000257359 RP11-780K2.1 12 114370374 114375060 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.49968e-12 rs746915907 46 ENSG00000257603 RP11-100F15.1 12 114514938 114517707 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell NA rs746915907 46 ENSG00000257997 RP11-100F15.2 12 114518186 114551294 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell NA rs746915907 46 ENSG00000257300 HAUS8P1 12 114535487 114536028 1 pseudogene 100420901 HAUS8P1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell NA rs746915907 46 ENSG00000257915 GLULP5 12 114542347 114543736 1 pseudogene 100421694 GLULP5 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell NA rs746915907 46 ENSG00000257476 RP11-139B1.1 12 114676775 114679575 -1 lincRNA 105369996 LINC02459 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000089225 TBX5 12 114791736 114846247 -1 protein_coding 6910 TBX5 0.991878563864068 -0.562004347 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000255399 TBX5-AS1 12 114845996 114850636 1 antisense 255480 TBX5-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000222982 RN7SKP216 12 114942681 114942992 -1 misc_RNA 106479190 RN7SKP216 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000255830 RP11-385N17.3 12 114986659 114987657 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000265632 AC069240.1 12 114988567 114988654 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000258254 RP11-162N7.1 12 115059566 115060727 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.49968e-12 rs746915907 46 ENSG00000252459 SNORA27 12 115175509 115175603 1 snoRNA 619499 SNORA27 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000257519 RP11-116D17.2 12 115700975 115708401 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs746915907 46 ENSG00000271579 RP11-116D17.3 12 115737393 115738513 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs746915907 46 ENSG00000257726 RP11-116D17.1 12 115800817 115802550 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs746915907 46 ENSG00000257781 RP11-110L15.1 12 116193067 116237741 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs746915907 46 ENSG00000200112 SNORD56 12 116290453 116290523 -1 snoRNA 26793 SNORD56 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm NA rs746915907 46 ENSG00000123066 MED13L 12 116395711 116715143 -1 protein_coding 23389 MED13L 0.999999998677147 -0.689697777 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs746915907 46 ENSG00000258034 RP11-493P1.2 12 116398992 116400538 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs746915907 46 ENSG00000200665 RNU6-1188P 12 116520375 116520481 1 snRNA 106480408 RNU6-1188P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.49968e-12 rs746915907 46 ENSG00000207967 MIR620 12 116586365 116586459 -1 miRNA 693205 MIR620 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.49968e-12 rs746915907 46 ENSG00000257979 SNRPGP18 12 116606850 116607063 1 pseudogene 106480680 SNRPGP18 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs746915907 46 ENSG00000258337 RP11-115H15.2 12 116612307 116619100 -1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs746915907 46 ENSG00000263768 AC060226.1 12 116693688 116693793 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs746915907 46 ENSG00000196668 LINC00173 12 116971227 116974323 1 processed_transcript 100287569 LINC00173 NA NA 0 0 1 0.000104511 1.07135e-38 GTEx/v8/Whole_Blood NA No NA NA rs746915907 46 ENSG00000171471 MAP1LC3B2 12 116997186 117014425 1 protein_coding 643246 MAP1LC3B2 0.0237056854362151 0.490193767 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 1.49968e-12 rs746915907 46 ENSG00000258249 RP11-497G19.3 12 117037075 117041390 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs746915907 46 ENSG00000257883 RP11-497G19.1 12 117099387 117135870 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000257654 RP11-497G19.2 12 117136141 117140935 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs746915907 46 ENSG00000111412 C12orf49 12 117153593 117175875 -1 protein_coding 79794 C12orf49 0.0452103165858912 -1.014957586 0 0 35 1.3149e-56 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs746915907 46 ENSG00000135119 RNFT2 12 117176096 117291436 1 protein_coding 84900 RNFT2 0.790709970439595 2.099677776 0 0 35 5.6025e-71 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Brain_Cerebellar_Hemisphere NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs746915907 46 ENSG00000239374 RP11-407P2.1 12 117193200 117193679 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs746915907 46 ENSG00000201382 RNU6-558P 12 117219910 117220013 1 snRNA 106481358 RNU6-558P NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 1.49968e-12 rs746915907 46 ENSG00000135116 HRK 12 117293949 117319246 -1 protein_coding 8739 HRK NA 0.578000224 11 16.3 36 3.27170000000001e-310 0 PsychENCODE_eQTLs:DICE/Monocyte_classical:DICE/Monocyte_non_classical:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Thyroid:GTEx/v7/Whole_Blood:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Spleen:GTEx/v6/Whole_Blood NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.49968e-12 rs746915907 46 ENSG00000240100 RP11-240G22.1 12 117346117 117346432 1 pseudogene NA NA NA NA 8 9.461 21 3.44385e-06 0.00252397778899546 BIOSQTL/BIOS_eQTL_geneLevel NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs746915907 46 ENSG00000174989 FBXW8 12 117348761 117468953 1 protein_coding 26259 FBXW8 8.69106598857506e-13 -0.161468095 6 9.461 37 3.5028e-295 0 DICE/T_CD4_naive_activated:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/T_CD4_TH1_17:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Pituitary:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Spleen:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Whole_Blood:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.49968e-12 rs746915907 46 ENSG00000257279 RP11-231I16.1 12 117415247 117425142 -1 antisense 100506551 LOC100506551 NA NA 2 9.081 34 1.08292e-18 0 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes Aorta:Left_Ventricle:Liver:Pancreas:Right_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.49968e-12 rs746915907 46 ENSG00000088992 TESC 12 117476728 117537284 -1 protein_coding 54997 TESC 0.692139730962892 NA 0 0 37 1.427e-165 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Whole_Blood:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Stomach:GTEx/v7/Heart_Atrial_Appendage NA Yes Left_Ventricle:Liver:Lung:Pancreas:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.49968e-12 rs746915907 46 ENSG00000258285 RP11-103B5.2 12 117537286 117579896 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Lung:Pancreas:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs746915907 46 ENSG00000135108 FBXO21 12 117581146 117628336 -1 protein_coding 23014 FBXO21 0.990625618968859 -0.85012191 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs746915907 46 ENSG00000176871 WSB2 12 118470712 118500235 -1 protein_coding 55884 WSB2 0.503215469280486 -0.405005926 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000256311 RP11-64B16.5 12 119663639 119696822 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000222647 AC002070.1 12 120018597 120018700 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000224982 TMEM233 12 120031264 120079363 1 protein_coding 387890 TMEM233 NA -0.068932595 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000122966 CIT 12 120123595 120315095 -1 protein_coding 11113 CIT 0.999998739281467 -0.886311763 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000255692 RP1-127H14.3 12 120137573 120138816 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000221323 MIR1178 12 120151439 120151529 -1 miRNA 100302274 MIR1178 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs746915907 46 ENSG00000188026 RILPL1 12 123955925 124018265 -1 protein_coding 353116 RILPL1 0.0660195664772473 -0.38898278 0 0 15 4.559e-07 0.00409438638077793 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000139514 SLC7A1 13 30083547 30169825 -1 protein_coding 6541 SLC7A1 0.574964447374533 -1.025235931 0 0 15 1.4468e-07 0.00155183116076971 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000136143 SUCLA2 13 48510622 48612125 -1 protein_coding 8803 SUCLA2 0.0306681591456276 0.240559831 0 0 8 2.4869e-06 0.0183800100620493 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000102796 DHRS12 13 52342129 52378293 -1 protein_coding 79758 DHRS12 0.00725776436102893 -0.134210784 0 0 1 3.974e-07 0.00349435863730967 eQTLGen_trans_eQTLs NA No NA NA rs34000805 59 ENSG00000136111 TBC1D4 13 75858808 76056250 -1 protein_coding 9882 TBC1D4 3.64406926442853e-13 0.627014724 0 0 6 3.5659e-06 0.0251121076233184 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000134897 BIVM 13 103451399 103493885 1 protein_coding 54841 BIVM 6.43353311511258e-06 -0.58874894 0 0 14 9.2104e-07 0.00766069856178456 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000198176 TFDP1 13 114239013 114295785 1 protein_coding 7027 TFDP1 0.963153120498646 -0.648882183 0 0 3 1.3943e-07 0.0015211970074813 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000129484 PARP2 14 20811741 20826064 1 protein_coding 10038 PARP2 2.09998835678433e-07 1.185514233 0 0 9 1.6365e-06 0.0127346205657836 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000259070 LINC00639 14 39218545 39417477 -1 lincRNA 283547 LINC00639 NA NA 0 0 47 NA 0.009 CMC_SVA_trans NA No NA 6.0256e-11 rs35441607 24 ENSG00000100532 CGRRF1 14 54976530 55005567 1 protein_coding 10668 CGRRF1 0.00522692652830377 0.525563569 0 0 1 1.7391e-06 0.0134834460662157 eQTLGen_trans_eQTLs NA No NA NA rs1888995 62 ENSG00000131979 GCH1 14 55308726 55369570 -1 protein_coding 2643 GCH1 0.942485932944866 0.329841111 0 0 9 5.3726e-09 3.87847446670976e-05 eQTLGen_cis_eQTLs NA No NA NA rs8014725 47 ENSG00000271180 RP11-665C16.8 14 55707340 55707798 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs8014725 47 ENSG00000182521 TBPL2 14 55880259 55923444 -1 protein_coding 387332 TBPL2 4.93486514101523e-08 1.003281416 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.23594e-17 rs8014725 47 ENSG00000239199 RPL21P6 14 55880274 55880777 -1 pseudogene 652975 RPL21P6 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.23594e-17 rs8014725 47 ENSG00000186615 KTN1-AS1 14 55965996 56046828 -1 antisense 100129075 KTN1-AS1 NA NA 0 0 12 1.1252e-05 0.00767262192177692 BIOSQTL/BIOS_eQTL_geneLevel NA No NA NA rs8014725 47 ENSG00000213641 RPL7AP4 14 56010119 56010887 1 pseudogene 652985 RPL7AP4 NA NA 0 0 0 NA NA NA NA Yes IMR90:Trophoblast-like_Cell NA rs8014725 47 ENSG00000271484 RP11-132J14.3 14 56013392 56014841 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Trophoblast-like_Cell NA rs8014725 47 ENSG00000126777 KTN1 14 56025790 56168244 1 protein_coding 3895 KTN1 0.639772920815945 NA 1 3.967 26 6.8822e-43 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis NA Yes IMR90:Trophoblast-like_Cell 3.23594e-17 rs8014725 47 ENSG00000258784 RP11-813I20.2 14 56214926 56239921 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 3.23594e-17 rs8014725 47 ENSG00000177350 RPL13AP3 14 56232895 56234435 1 pseudogene 645683 RPL13AP3 NA NA 0 0 10 0.000394864 0.0271922021525114 PsychENCODE_eQTLs NA Yes IMR90 3.23594e-17 rs8014725 47 ENSG00000258791 LINC00520 14 56247864 56263406 -1 processed_transcript 645687 LINC00520 NA NA 0 0 0 NA NA NA NA Yes Aorta:Liver:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.23594e-17 rs8014725 47 ENSG00000259868 RP11-1012E15.1 14 56382445 56383044 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.23594e-17 rs8014725 47 ENSG00000213622 AL163952.1 14 56464932 56465307 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.23594e-17 rs8014725 47 ENSG00000212522 Y_RNA 14 56535161 56535245 1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.23594e-17 rs8014725 47 ENSG00000221254 AL163952.2 14 56542198 56542284 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.23594e-17 rs8014725 47 ENSG00000139946 PELI2 14 56584532 56768244 1 protein_coding 57161 PELI2 0.948506494774501 -0.606298678 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 3.23594e-17 rs8014725 47 ENSG00000259483 RP11-930O11.2 14 56770208 56777479 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 3.23594e-17 rs8014725 47 ENSG00000259719 RP11-930O11.1 14 56777598 56811719 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 3.23594e-17 rs8014725 47 ENSG00000070269 TMEM260 14 56955072 57117324 1 protein_coding 54916 TMEM260 5.88265833039317e-12 -0.368844794 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Aorta:Bladder:Left_Ventricle:Liver:Right_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 3.23594e-17 rs8014725 47 ENSG00000258803 RP11-624J12.1 14 56981049 57018027 1 lincRNA 101927690 LOC101927690 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.23594e-17 rs8014725 47 ENSG00000258428 RP11-1085N6.2 14 57099962 57115376 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesendoderm:hESC NA rs8014725 47 ENSG00000259133 RP11-1085N6.3 14 57115683 57197253 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs8014725 47 ENSG00000242995 RP11-1085N6.1 14 57150139 57150459 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs8014725 47 ENSG00000270163 RP11-1085N6.6 14 57266623 57267306 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:hESC NA rs8014725 47 ENSG00000165588 OTX2 14 57267425 57277197 -1 protein_coding 5015 OTX2 0.744599586946362 -0.822575099 0 0 0 NA NA NA NA Yes Mesendoderm:hESC NA rs8014725 47 ENSG00000248550 OTX2-AS1 14 57279901 57618895 1 antisense 100309464 OTX2-AS1 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs8014725 47 ENSG00000258776 RP11-1085N6.5 14 57284288 57360428 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.23594e-17 rs8014725 47 ENSG00000243801 RN7SL461P 14 57291092 57291374 -1 misc_RNA 106481844 RN7SL461P NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs8014725 47 ENSG00000200818 RNU6-1204P 14 57291704 57291810 1 snRNA 106481560 RNU6-1204P NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs8014725 47 ENSG00000243388 RPL3P3 14 57445127 57446339 1 pseudogene 645798 RPL3P3 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm:Trophoblast-like_Cell:hESC 3.23594e-17 rs8014725 47 ENSG00000258758 RP11-613G13.1 14 57507603 57509222 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm NA rs8014725 47 ENSG00000259136 RP11-108M12.2 14 57511364 57511678 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm NA rs8014725 47 ENSG00000258592 RP11-108M12.3 14 57532978 57579378 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.23594e-17 rs8014725 47 ENSG00000070367 EXOC5 14 57670518 57735726 -1 protein_coding 10640 EXOC5 0.996683024892685 -1.282058958 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.23594e-17 rs8014725 47 ENSG00000212928 AL391152.1 14 57671888 57673291 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 3.23594e-17 rs8014725 47 ENSG00000053770 AP5M1 14 57735627 57756797 1 protein_coding 55745 AP5M1 0.000108637306093947 -0.58821253 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.23594e-17 rs8014725 47 ENSG00000259008 RP11-932A10.1 14 57822164 57826128 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.23594e-17 rs8014725 47 ENSG00000139977 NAA30 14 57857262 57882635 1 protein_coding 122830 NAA30 0.97371507084361 -1.682988903 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 3.23594e-17 rs8014725 47 ENSG00000100557 C14orf105 14 57936019 57960585 -1 protein_coding 55195 C14orf105 0.000136147483752656 -0.637274941 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs8014725 47 ENSG00000151812 SLC35F4 14 58030640 58448912 -1 protein_coding 341880 SLC35F4 0.00969257412732057 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs8014725 47 ENSG00000259969 RP11-999E24.3 14 58460263 58461243 -1 sense_overlapping NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs8014725 47 ENSG00000139971 C14orf37 14 58466453 58764857 -1 protein_coding 145407 C14orf37 8.27235953361938e-05 2.430974882 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs147148763 48 ENSG00000258836 RP11-349A22.2 14 58567703 58568292 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs147148763:rs8014725 47:48 ENSG00000243700 RN7SL598P 14 58646489 58646779 1 misc_RNA 106481759 RN7SL598P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs147148763:rs8014725 47:48 ENSG00000258519 RP11-349A22.3 14 58651294 58652225 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs147148763:rs8014725 47:48 ENSG00000131966 ACTR10 14 58666798 58701750 1 protein_coding 55860 ACTR10 0.00473623657219373 NA 0 0 1 1.10487e-05 1.16471e-05 GTEx/v7/Brain_Cerebellum NA Yes IMR90:Mesenchymal_Stem_Cell NA rs147148763;rs147148763:rs8014725 47:48 ENSG00000258682 CTD-2002H8.2 14 58731380 58736399 1 sense_overlapping NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs8014725:rs147148763 47:48 ENSG00000257621 RP11-349A22.5 14 58732083 58764852 -1 antisense 379025 PSMA3-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs147148763 48 ENSG00000180189 HMGB1P14 14 58751491 58752116 1 pseudogene 319130 HMGB1P14 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs8014725:rs147148763 47:48 ENSG00000268466 AL132989.1 14 58754751 58755865 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs8014725:rs147148763 47:48 ENSG00000252782 RNU6-341P 14 58759011 58759106 -1 snRNA 106481287 RNU6-341P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs8014725:rs147148763 47:48 ENSG00000032219 ARID4A 14 58765103 58840605 1 protein_coding 5926 ARID4A 0.999999263100059 -1.459535231 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs147148763 48 ENSG00000258658 RP11-517O13.3 14 58836741 58862359 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000196860 TOMM20L 14 58862634 58875419 1 protein_coding 387990 TOMM20L 0.000787655427739962 NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000258378 RP11-517O13.1 14 58865275 58893843 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000100575 TIMM9 14 58875212 58894332 -1 protein_coding 26520 TIMM9 0.437845525129567 -0.428959584 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 7.55092e-22 rs147148763 48 ENSG00000100578 KIAA0586 14 58894103 59015216 1 protein_coding 9786 KIAA0586 1.44868459274921e-12 -0.513924372 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 7.55092e-22 rs147148763 48 ENSG00000252198 Y_RNA 14 58908562 58908710 1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 7.55092e-22 rs147148763 48 ENSG00000258650 HSBP1P1 14 58930689 58930854 1 pseudogene 326296 HSBP1P1 NA NA 0 0 0 NA NA NA NA Yes Aorta:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000258900 HNRNPCP1 14 58987941 58988706 1 pseudogene 319133 HNRNPCP1 NA NA 0 0 3 4.07141e-05 0.0152072 GTEx/v8/Cells_Cultured_fibroblasts NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000239510 RPL9P5 14 59030864 59031334 1 pseudogene 100129179 RPL9P5 NA NA 0 0 0 NA NA NA NA Yes Aorta:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000165617 DACT1 14 59100685 59115039 1 protein_coding 51339 DACT1 0.81659755259209 NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:Aorta:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000221427 AL121819.1 14 59237870 59237964 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000213598 RP11-112J1.1 14 59261372 59261747 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs147148763 48 ENSG00000258734 RP11-112J1.3 14 59294397 59294894 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000258583 RP11-112J1.2 14 59294952 59484046 1 lincRNA 102723742 LINC01500 NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000258685 CTD-2315A10.2 14 59602206 59603139 -1 pseudogene NA NA NA NA 14 14.97 0 NA NA NA NA Yes Aorta:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs147148763 48 ENSG00000258996 CTD-2315A10.1 14 59648311 59648658 1 pseudogene NA NA NA NA 11 11.61 0 NA NA NA NA Yes Aorta:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000100592 DAAM1 14 59655364 59838123 1 protein_coding 23002 DAAM1 0.999990849460485 1.582359631 13 16.92 48 4.6857e-31 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v6/Nerve_Tibial NA Yes Fetal_Cortex:Aorta:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000252869 AL159140.1 14 59866741 59866869 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000181619 GPR135 14 59895740 59932060 -1 protein_coding 64582 GPR135 0.00393204052879483 -1.125484596 0 0 3 2.0894e-07 0.00067967824406061 eQTLGen_cis_eQTLs NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000126790 L3HYPDH 14 59927081 59951148 -1 protein_coding 112849 L3HYPDH 1.52384322492068e-07 0.127956451 0 0 49 2.2107e-39 0 PsychENCODE_eQTLs:DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:eQTLGen_cis_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Artery_Aorta:GTEx/v7/Brain_Hippocampus:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Artery_Aorta:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Thyroid NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000258782 RP11-701B16.2 14 59945992 59992155 -1 processed_transcript NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.55092e-22 rs147148763 48 ENSG00000050130 JKAMP 14 59951161 59972128 1 protein_coding 51528 JKAMP 0.0598976863876527 0.727921718 0 0 48 2.9354e-132 0 eQTLGen_cis_eQTLs:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Thyroid:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Lung:GTEx/v7/Stomach:GTEx/v6/Colon_Transverse NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 7.55092e-22 rs147148763 48 ENSG00000151838 CCDC175 14 59971257 60043549 -1 protein_coding 729665 CCDC175 NA 0.51436574 0 0 1 9.48144e-05 0.000195428 GTEx/v7/Nerve_Tibial NA Yes Aorta:Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs147148763 48 ENSG00000139970 RTN1 14 60062694 60337684 -1 protein_coding 6252 RTN1 0.959599485657203 -0.243475752 0 0 43 3.6807e-10 0 eQTLGen_cis_eQTLs NA Yes Adult_Cortex:Fetal_Cortex:Mesendoderm:hESC 7.55092e-22 rs147148763 48 ENSG00000263629 MIR5586 14 60113680 60113738 -1 miRNA 100847088 MIR5586 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs147148763 48 ENSG00000261120 RP11-62H20.1 14 60386141 60387057 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs147148763 48 ENSG00000131951 LRRC9 14 60386431 60530277 1 protein_coding 341883 LRRC9 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs147148763 48 ENSG00000100612 DHRS7 14 60610838 60636574 -1 protein_coding 51635 DHRS7 1.22281963443987e-05 0.804706964 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs147148763 48 ENSG00000258896 SCOCP1 14 60625694 60626042 1 pseudogene 317767 SCOCP1 NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 3.40408e-15 rs147148763 48 ENSG00000254718 CTD-2184C24.2 14 60706839 60715483 -1 antisense 101927702 LOC101927702 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:Mesendoderm NA rs147148763 48 ENSG00000100614 PPM1A 14 60712470 60765805 1 protein_coding 5494 PPM1A 0.985449561262778 -0.115520507 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:Mesendoderm NA rs147148763 48 ENSG00000258427 RBM8B 14 60864475 60864999 1 pseudogene 112846 RBM8B NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs147148763 48 ENSG00000259169 GNRHR2P1 14 60865652 60866731 -1 pseudogene 404718 GNRHR2P1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs147148763 48 ENSG00000126814 TRMT5 14 61438169 61448076 -1 protein_coding 57570 TRMT5 0.965267929961933 -1.837424828 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs147148763 48 ENSG00000206870 RNU6-398P 14 61441045 61441153 1 snRNA 106479742 RNU6-398P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs147148763 48 ENSG00000139974 SLC38A6 14 61447832 61550451 1 protein_coding 145389 SLC38A6 6.10703569830496e-16 -0.322756774 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs147148763 48 ENSG00000252380 SNORD112 14 61729679 61729750 -1 snoRNA 692215 SNORD112 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs147148763 48 ENSG00000182107 TMEM30B 14 61744088 61748558 -1 protein_coding 161291 TMEM30B 0.0211817301247061 -0.2721646 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs147148763 48 ENSG00000258777 HIF1A-AS1 14 62147759 62162541 -1 lincRNA 100750246 HIF1A-AS1 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs147148763 48 ENSG00000100644 HIF1A 14 62162231 62214976 1 protein_coding 3091 HIF1A 0.980689532418508 -0.246157214 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs147148763 48 ENSG00000258667 HIF1A-AS2 14 62182276 62217815 -1 lincRNA 105370526 HIF1A-AS2 NA NA 0 0 0 NA NA NA NA Yes GM12878 NA rs147148763 48 ENSG00000258964 RP11-618G20.1 14 62200856 62242978 1 processed_transcript NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878 NA rs147148763 48 ENSG00000023608 SNAPC1 14 62229075 62263146 1 protein_coding 6617 SNAPC1 3.82492140215155e-07 0.232677173 0 0 0 NA NA NA NA Yes GM12878 NA rs147148763 48 ENSG00000100568 VTI1B 14 68113792 68141548 -1 protein_coding 10490 VTI1B 0.209578768555067 -0.606100101 0 0 3 4.0413e-07 0.00356362046348929 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000081177 EXD2 14 69658228 69709075 1 protein_coding 55218 EXD2 1.11026481255e-08 -0.961555562 0 0 15 2.112e-07 0.00208604954367666 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000119640 ACYP1 14 75519924 75536186 -1 protein_coding 97 ACYP1 0.223001663900667 -0.092741837 0 0 1 5.1349e-06 0.033495217071376 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000182512 GLRX5 14 95999840 96011061 1 protein_coding 51218 GLRX5 0.626214086667008 0.307302309 0 0 3 1.6315e-09 5.70559147965006e-05 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000214548 MEG3 14 101245747 101327368 1 lincRNA 55384 MEG3 NA NA 0 0 1 6.7064e-06 0.0419303023954187 eQTLGen_trans_eQTLs NA No NA NA rs34320599 27 ENSG00000166069 TMCO5A 15 38214140 38259925 1 protein_coding 145942 TMCO5A 0.000421006608369141 -0.185732298 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.73968e-08 rs1080066 49 ENSG00000236914 RP11-1008C21.2 15 38361682 38365160 -1 lincRNA 107984773 LINC01852 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm 2.73968e-08 rs1080066 49 ENSG00000259380 RP11-346D14.1 15 38431796 38519088 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.73968e-08 rs1080066 49 ENSG00000171262 FAM98B 15 38746328 38779911 1 protein_coding 283742 FAM98B 0.394827182699865 0.363387829 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 4.9545e-47 rs1080066 49 ENSG00000259192 AC109631.1 15 38750961 38751741 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 4.9545e-47 rs1080066 49 ENSG00000172575 RASGRP1 15 38780304 38857776 -1 protein_coding 10125 RASGRP1 0.189676970174086 -0.768899635 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 4.9545e-47 rs1080066 49 ENSG00000259326 RP11-102L12.2 15 38795054 38797182 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 4.9545e-47 rs1080066 49 ENSG00000259598 RP11-275I4.1 15 38816271 38826856 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 2.73968e-08 rs1080066 49 ENSG00000201509 Y_RNA 15 38834444 38834544 1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 2.73968e-08 rs1080066 49 ENSG00000259747 RP11-275I4.2 15 38964048 38981392 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 4.9545e-47 rs1080066 49 ENSG00000175779 C15orf53 15 38988799 38992239 1 protein_coding 400359 C15orf53 0.0936098085913799 1.027728962 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 4.9545e-47 rs1080066 49 ENSG00000259731 RP11-326N17.1 15 39048755 39051614 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.9545e-47 rs1080066 49 ENSG00000259345 RP11-624L4.1 15 39157523 39719396 -1 antisense NA NA NA NA 16 13.85 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 4.9545e-47 rs1080066 49 ENSG00000259278 RP11-62C7.2 15 39311434 39317119 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.9545e-47 rs1080066 49 ENSG00000259423 RP11-265N7.2 15 39459940 39472231 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.9545e-47 rs1080066 49 ENSG00000259450 RP11-265N7.1 15 39480639 39486510 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.9545e-47 rs1080066 49 ENSG00000175746 C15orf54 15 39542885 39547046 1 protein_coding 400360 C15orf54 0.000115195661974805 1.741720509 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.9545e-47 rs1080066 49 ENSG00000259447 RP11-462P6.1 15 39592619 39602983 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 2.73968e-08 rs1080066 49 ENSG00000259269 RP11-624L4.2 15 39764904 39773407 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 4.9545e-47 rs1080066 49 ENSG00000259390 RP11-27M9.1 15 39804607 39812055 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.9545e-47 rs1080066 49 ENSG00000137801 THBS1 15 39873280 39891667 1 protein_coding 7057 THBS1 0.999073127290828 0.270686341 0 0 10 2.7421e-34 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 4.9545e-47 rs1080066 49 ENSG00000259279 CTD-2033D15.1 15 39885781 39886432 -1 antisense NA NA NA NA 0 0 4 6.5653e-07 0.000530166472272294 BIOSQTL/BIOS_eQTL_geneLevel NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 4.9545e-47 rs1080066 49 ENSG00000150667 FSIP1 15 39892232 40075031 -1 protein_coding 161835 FSIP1 4.51252744804813e-07 0.065852138 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 4.9545e-47 rs1080066 49 ENSG00000259580 RP11-37C7.1 15 40062760 40093534 -1 processed_transcript NA NA NA NA 0 0 1 0.000399035 0.0274319167847911 PsychENCODE_eQTLs NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 4.9545e-47 rs1080066 49 ENSG00000261136 RP11-37C7.3 15 40074772 40077818 1 antisense 105370941 LOC105370941 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 4.9545e-47 rs1080066 49 ENSG00000259432 RP11-37C7.2 15 40105424 40107630 -1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 4.9545e-47 rs1080066 49 ENSG00000238564 snoU13 15 40242907 40243009 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.73968e-08 rs1080066 49 ENSG00000259389 H3F3AP1 15 40243576 40243909 -1 pseudogene 654505 H3F3AP1 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 2.73968e-08 rs1080066 49 ENSG00000104093 DMXL2 15 51739908 51915030 -1 protein_coding 23312 DMXL2 0.999999999395933 -0.481159683 0 0 2 1.6138e-06 0.0126069338135975 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000137876 RSL24D1 15 55473004 55489265 -1 protein_coding 51187 RSL24D1 0.946909507265446 1.082250322 0 0 0 NA NA NA NA Yes IMR90 NA rs28379349 50 ENSG00000261072 RP11-5N19.3 15 56484551 56485460 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs4775006:rs28379349 50 ENSG00000199784 RNU6-1287P 15 56566728 56566834 -1 snRNA 106480127 RNU6-1287P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000261174 RP11-844G16.1 15 56615391 56615917 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000259941 RP11-48G14.2 15 56686519 56688983 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000261823 RP11-48G14.1 15 56700681 56702384 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000138587 MNS1 15 56713742 56757335 -1 protein_coding 55329 MNS1 5.52556154828089e-14 -0.094066949 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000252984 RNU6-844P 15 57697272 57697373 -1 snRNA 106479939 RNU6-844P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs4775006:rs28379349 50 ENSG00000261489 CTD-2515H24.3 15 57769682 57770527 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell NA rs4775006:rs28379349 50 ENSG00000240874 CTD-2515H24.1 15 57848149 57848577 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000137878 GCOM1 15 57884106 58006943 1 protein_coding 145781 GCOM1 3.95491169061382e-09 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000263155 MYZAP 15 57884139 57977562 1 protein_coding 100820829 MYZAP 2.21367341168049e-09 -0.379993748 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000255529 POLR2M 15 57884231 58074960 1 protein_coding 81488 POLR2M 0.169086388609866 -0.26216385 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000261219 RP11-344A16.2 15 58012493 58013126 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000128918 ALDH1A2 15 58245622 58790065 -1 protein_coding 8854 ALDH1A2 0.516630055977224 1.671453522 175 19.71 173 1.86824e-11 8.46715e-08 GTEx/v8/Artery_Tibial:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Ovary:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Artery_Tibial:GTEx/v7/Testis:GTEx/v6/Artery_Tibial NA No NA 6.01174e-12 rs28379349;rs4775006 50 ENSG00000259477 RP11-86K22.1 15 58271914 58272844 -1 pseudogene NA NA NA NA 31 10.77 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs4775006;rs28379349;rs28379349:rs4775006:rs28379349 50 ENSG00000259285 CTD-2330J20.2 15 58357423 58363241 1 antisense NA NA NA NA 18 18.98 3 7.77216e-06 0.0287744 GTEx/v7/Heart_Atrial_Appendage NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs4775006;rs28379349;rs28379349:rs4775006:rs28379349 50 ENSG00000103569 AQP9 15 58430368 58478110 1 protein_coding 366 AQP9 0.446614670928057 1.792505109 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000259651 CTD-2330J20.1 15 58442474 58442762 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000259626 RP11-925D8.2 15 58442834 58443161 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000259600 RP11-925D8.3 15 58443232 58444712 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000259379 RP11-925D8.5 15 58444805 58446606 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000259671 RP11-925D8.6 15 58447159 58448260 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000240934 RP11-925D8.1 15 58492805 58493217 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Liver:Mesendoderm:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000166035 LIPC 15 58702768 58861151 1 protein_coding 3990 LIPC 0.000171127202456162 0.201437992 0 0 0 NA NA NA NA Yes Mesendoderm NA rs4775006:rs28379349 50 ENSG00000259476 RP11-50C13.2 15 58813510 58815570 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm:hESC 6.01174e-12 rs4775006:rs28379349:rs28379349;rs4775006 50 ENSG00000259250 RP11-50C13.1 15 58879706 58883875 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000137845 ADAM10 15 58887403 59042177 -1 protein_coding 102 ADAM10 0.999844506827148 -1.03229948 0 0 136 NA 0.009 CMC_NoSVA_cis NA No NA 6.01174e-12 rs28379349;rs4775006 50 ENSG00000270986 RP11-123C21.2 15 58964495 58965132 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes hESC NA rs4775006:rs28379349 50 ENSG00000182625 RP11-123C21.1 15 58978610 58978816 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes hESC NA rs4775006:rs28379349 50 ENSG00000199730 RN7SKP95 15 58996051 58996353 -1 misc_RNA 106480862 RN7SKP95 NA NA 0 0 0 NA NA NA NA Yes hESC NA rs4775006:rs28379349 50 ENSG00000128923 FAM63B 15 59063391 59154099 1 protein_coding 54629 FAM63B 0.189061306036796 -0.793708674 0 0 56 NA 0.049 CMC_NoSVA_cis NA No NA NA rs28379349;rs4775006 50 ENSG00000259402 RP11-30K9.4 15 59107471 59109927 1 sense_intronic NA NA NA NA 0 0 72 9.94914990162e-06 0.049 DICE/NK NA No NA NA rs4775006;rs28379349 50 ENSG00000259353 RP11-30K9.5 15 59149030 59157262 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs28379349:rs4775006 50 ENSG00000259738 ZNF444P1 15 59157205 59157502 1 pseudogene 100419866 ZNF444P1 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs28379349:rs4775006 50 ENSG00000157450 RNF111 15 59157374 59389618 1 protein_coding 54778 RNF111 0.999889183334039 -0.971846077 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs28379349:rs4775006 50 ENSG00000242747 RP11-30K9.1 15 59161858 59162333 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesendoderm:Trophoblast-like_Cell 6.01174e-12 rs4775006:rs28379349:rs28379349;rs4775006 50 ENSG00000225798 AC025918.2 15 59182166 59186281 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesendoderm:Trophoblast-like_Cell 6.01174e-12 rs4775006:rs28379349:rs28379349;rs4775006 50 ENSG00000241640 RP11-59H7.1 15 59341598 59342584 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs4775006:rs28379349 50 ENSG00000157456 CCNB2 15 59397277 59417244 1 protein_coding 9133 CCNB2 1.58542348538884e-06 -0.394770432 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Trophoblast-like_Cell 6.01174e-12 rs4775006:rs28379349:rs28379349;rs4775006 50 ENSG00000259732 RP11-59H7.3 15 59413233 59425449 1 sense_overlapping NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Trophoblast-like_Cell 6.01174e-12 rs4775006:rs28379349:rs28379349;rs4775006 50 ENSG00000268327 C15ORF31 15 59439899 59440054 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 6.01174e-12 rs4775006:rs28379349:rs28379349;rs4775006 50 ENSG00000221096 AC092757.1 15 59443177 59443267 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000253030 MIR2116 15 59463382 59463461 -1 miRNA 100313886 MIR2116 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000238767 snoU13 15 59682407 59682516 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs28379349:rs4775006 50 ENSG00000259750 RP11-356M20.2 15 59693420 59694203 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs28379349:rs4775006 50 ENSG00000259674 RP11-356M20.1 15 59699162 59700353 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs28379349:rs4775006 50 ENSG00000200252 Y_RNA 15 59701104 59701214 1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs28379349:rs4775006 50 ENSG00000243780 RP11-112N19.1 15 59817621 59818080 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4775006:rs28379349 50 ENSG00000240238 RP11-112N19.2 15 59844814 59845292 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000201704 RNA5SP396 15 59866302 59866421 -1 rRNA 100873649 RNA5SP396 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000200606 Y_RNA 15 59867827 59867922 -1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000140297 GCNT3 15 59887074 59932438 1 protein_coding 9245 GCNT3 4.04466927083348e-09 0.663107477 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000140307 GTF2A2 15 59930261 59949740 -1 protein_coding 2958 GTF2A2 0.386341515138839 0.898900449 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000227161 AC092755.4 15 59936497 59964501 -1 sense_overlapping NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs28379349:rs4775006 50 ENSG00000140299 BNIP2 15 59951345 59981733 -1 protein_coding 663 BNIP2 1.6929996956937e-05 3.06677109 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs28379349:rs4775006 50 ENSG00000259657 PIGHP1 15 59968956 59969520 1 pseudogene 644761 PIGHP1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs28379349:rs4775006 50 ENSG00000259238 RP11-361D15.2 15 59980716 59981617 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs28379349:rs4775006 50 ENSG00000234797 RPS3AP6 15 60060543 60061347 1 pseudogene 145767 RPS3AP6 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000259601 RP11-568G20.2 15 60163710 60165694 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000259573 NMNAT1P5 15 60257141 60258283 1 pseudogene 100129256 NMNAT1P5 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000171956 FOXB1 15 60296421 60353929 1 protein_coding 27023 FOXB1 0.702812387833519 -0.39321266 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4775006:rs28379349 50 ENSG00000259558 MESTP2 15 60345403 60346291 -1 pseudogene 100421572 MESTP2 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000259223 RP11-82L7.4 15 60365867 60410519 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000259274 CTD-2501E16.2 15 60822172 60837358 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 6.01174e-12 rs4775006:rs28379349:rs28379349;rs4775006 50 ENSG00000259513 CYCSP38 15 60850279 60850600 1 pseudogene 360184 CYCSP38 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs28379349:rs4775006 50 ENSG00000259482 RP11-219B17.2 15 60973768 60979087 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 6.01174e-12 rs28379349:rs4775006:rs28379349;rs4775006 50 ENSG00000259591 RP11-554D20.1 15 61056105 61057824 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs28379349:rs4775006 50 ENSG00000140350 ANP32A 15 69070874 69113236 -1 protein_coding 8125 ANP32A 0.973870035856712 -0.320247331 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs4777315 51 ENSG00000265195 MIR4312 15 69094189 69094264 -1 miRNA 100422971 MIR4312 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs4777315 51 ENSG00000258484 SPESP1 15 69110560 69239150 1 protein_coding 246777 SPESP1 1.97658953424779e-05 -0.698005088 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs4777315 51 ENSG00000259265 RP11-809H16.4 15 69329889 69335905 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Trophoblast-like_Cell 1.36301e-08 rs4777315 51 ENSG00000212766 LINC00277 15 69365266 69388160 1 lincRNA 283673 LINC00277 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4777315 51 ENSG00000259222 RP11-809H16.5 15 69373219 69392275 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4777315 51 ENSG00000138604 GLCE 15 69452923 69564556 1 protein_coding 26035 GLCE 0.327374271928511 -0.66569343 0 0 0 NA NA NA NA Yes IMR90 NA rs4777315 51 ENSG00000266374 AC026512.1 15 69452990 69453063 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs4777315 51 ENSG00000221376 SNORA77 15 69617632 69617759 -1 snoRNA 677843 SNORA77 NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs4777315 51 ENSG00000252972 RNA5SP398 15 69659924 69660020 1 rRNA NA RNA5SP398 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell 1.36301e-08 rs4777315 51 ENSG00000259645 RP11-253M7.6 15 69683531 69684488 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.36301e-08 rs4777315 51 ENSG00000259426 RP11-253M7.1 15 69689243 69707368 -1 antisense 145694 LOC145694 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.36301e-08 rs4777315 51 ENSG00000207395 Y_RNA 15 69698780 69698891 1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.36301e-08 rs4777315 51 ENSG00000137807 KIF23 15 69706585 69740764 1 protein_coding 9493 KIF23 0.999999790749235 -0.711163005 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.36301e-08 rs4777315 51 ENSG00000259191 RP11-253M7.3 15 69726805 69727459 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000137818 RPLP1 15 69745123 69748255 1 protein_coding 6176 RPLP1 0.680907046710861 -0.586635759 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000207119 U3 15 69750281 69750488 -1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000259215 RP11-253M7.4 15 69750861 69754145 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000245750 RP11-279F6.1 15 69755365 69863775 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000259457 RP11-279F6.2 15 69857063 69858129 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000259641 RP11-279F6.3 15 69884468 69988089 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Trophoblast-like_Cell 1.36301e-08 rs4777315 51 ENSG00000238870 AC009677.1 15 70023079 70023161 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.36301e-08 rs4777315 51 ENSG00000215958 AC021818.1 15 70077754 70077843 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.36301e-08 rs4777315 51 ENSG00000259496 RP11-19J5.1 15 70095655 70096385 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs4777315 51 ENSG00000259309 RP11-19J5.2 15 70113095 70115195 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs4777315 51 ENSG00000200216 RNU6-745P 15 70485575 70485683 1 snRNA 106481415 RNU6-745P NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4777315 51 ENSG00000259252 AC011648.1 15 70487977 70490848 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4777315 51 ENSG00000259227 RP11-64K10.1 15 70894463 70894855 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.36301e-08 rs4777315 51 ENSG00000137831 UACA 15 70946893 71055932 -1 protein_coding 55075 UACA 2.35035184982735e-17 -0.996956311 0 0 96 4.1756e-26 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Thyroid NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000259532 RP11-138H8.2 15 71041271 71046516 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000259624 RP11-138H8.3 15 71060350 71071207 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000259452 RP11-138H8.4 15 71083352 71083825 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000235420 RPL29P30 15 71088936 71095027 -1 pseudogene 729611 RPL29P30 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000267539 RP11-138H8.7 15 71121469 71123745 -1 lincRNA NA NA NA NA 26 12.7 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000166173 LARP6 15 71123863 71146498 -1 protein_coding 55323 LARP6 0.882216412282497 NA 34 12.7 105 1.45921e-32 5.17989e-30 PsychENCODE_eQTLs:xQTLServer_eQTLs:CMC_SVA_cis:BRAINEAC/HIPP:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Thyroid NA Yes Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000259744 RP11-138H8.6 15 71141222 71142109 -1 sense_intronic NA NA NA NA 9 3.15 104 1.56343e-11 2.13391e-07 PsychENCODE_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Thyroid NA Yes Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000137821 LRRC49 15 71145578 71342414 1 protein_coding 54839 LRRC49 0.446510312132105 -0.199951943 77 18.49 34 6.31997e-05 0.00563523350850362 PsychENCODE_eQTLs NA Yes Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000259470 KRT8P9 15 71151053 71152501 1 pseudogene 390601 KRT8P9 NA NA 44 15.46 0 NA NA NA NA Yes Adult_Cortex:Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000129028 THAP10 15 71173681 71185124 -1 protein_coding 56906 THAP10 0.00119434425578864 -0.537920966 19 18.49 104 9.299e-10 1.30625040820325e-05 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis NA Yes Promoter_anchored_loops:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000242276 RPL5P3 15 71355440 71356328 -1 pseudogene 400385 RPL5P3 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 1.36301e-08 rs4777315 51 ENSG00000187720 THSD4 15 71389291 72075722 1 protein_coding 79875 THSD4 0.00181827156769691 0.891673759 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs4777315 51 ENSG00000225362 CT62 15 71402583 71407833 -1 protein_coding 196993 CT62 0.0331981608348203 -0.068609819 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000259964 RP11-673C5.2 15 71439989 71481381 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 1.36301e-08 rs4777315 51 ENSG00000212664 RP11-592N21.1 15 71633466 71634086 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000260586 RP11-592N21.2 15 71634663 71640810 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000252813 AC108861.1 15 71767826 71767901 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.36301e-08 rs4777315 51 ENSG00000031544 NR2E3 15 72084977 72110600 1 processed_transcript 10002 NR2E3 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000260037 CTD-2524L6.3 15 72110737 72115725 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000066933 MYO9A 15 72114632 72410918 -1 protein_coding 4649 MYO9A 0.999991725771394 0.764084974 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs4777315 51 ENSG00000200873 RNA5SP399 15 72150911 72151027 1 rRNA 100873652 RNA5SP399 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000261632 RP11-390D11.1 15 72264547 72332606 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000260576 RP11-390D11.2 15 72333535 72333994 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000222094 RNU2-65P 15 72337524 72337708 1 snRNA 106480226 RNU2-65P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000223253 AC022872.1 15 72343592 72343670 1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000166192 SENP8 15 72406599 72433311 1 protein_coding 123228 SENP8 0.257288612865091 -0.092933307 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs4777315 51 ENSG00000243568 RP11-2I17.1 15 72426982 72427777 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs4777315 51 ENSG00000260173 RP11-2I17.4 15 72432845 72447800 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000175318 GRAMD2 15 72452148 72490126 -1 protein_coding 196996 GRAMD2 2.95954761695704e-08 -1.504516326 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.36301e-08 rs4777315 51 ENSG00000137817 PARP6 15 72533522 72565340 -1 protein_coding 56965 PARP6 0.997418877545242 NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4777315 51 ENSG00000261460 RP11-106M3.3 15 72571208 72644135 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4777315 51 ENSG00000261423 RP11-1007O24.3 15 72700119 72767509 -1 lincRNA 105370888 TMEM202-AS1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs4777315 51 ENSG00000271072 RP11-1007O24.4 15 72742998 72743815 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4777315 51 ENSG00000261187 RP11-1007O24.2 15 72757469 72758603 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4777315 51 ENSG00000166233 ARIH1 15 72766667 72879692 1 protein_coding 25820 ARIH1 0.999665081826237 -1.677898808 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs4777315 51 ENSG00000183324 C15orf60 15 73735499 73852355 1 protein_coding 283677 C15orf60 0.00343584386758435 0.367037844 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4777315 51 ENSG00000140365 COMMD4 15 75628232 75634268 1 protein_coding 54939 COMMD4 0.237758189788472 -0.006749996 0 0 3 4.0656e-06 0.0278862413528055 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000174628 IQCK 16 19727778 19868907 1 protein_coding 124152 IQCK 0.0539326256943501 -1.463173518 0 0 1 1.6845e-06 0.0130718370264475 eQTLGen_trans_eQTLs NA No NA NA rs3801383 32 ENSG00000077238 IL4R 16 27324989 27376099 1 protein_coding 3566 IL4R 0.0317438326163225 0.483668517 0 0 7 2.8184e-07 0.00268164107265643 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000099365 STX1B 16 31000577 31021949 -1 protein_coding 112755 STX1B 0.944474732619076 -1.610450086 0 0 13 1.1193e-07 0.00126582278481013 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000196155 PLEKHG4 16 67311413 67323402 1 protein_coding 25894 PLEKHG4 1.46441415776125e-09 -1.216852795 0 0 15 4.4198e-08 0.000619107921767272 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000168286 THAP11 16 67876213 67878097 1 protein_coding 57215 THAP11 0.465632985581296 NA 0 0 1 6.495e-06 0.0409506398537477 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000263203 CHTF8 16 69152757 69154331 -1 protein_coding 54921 CHTF8 NA -0.491897054 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs2549289 52 ENSG00000258429 PDF 16 69362524 69364498 -1 protein_coding 64146 PDF 0.0503154180966918 -0.040959267 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs2549289:rs3874602 52 ENSG00000272617 RP11-343C2.12 16 69362547 69368774 -1 protein_coding 84342 COG8 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs2549289:rs3874602 52 ENSG00000260371 RP11-343C2.9 16 69368994 69390209 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs2549289 52 ENSG00000132604 TERF2 16 69389464 69442474 -1 protein_coding 7014 TERF2 0.927472177448586 -0.576801065 0 0 14 1.91162e-05 0.000103274 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Ovary NA Yes hESC NA rs3874602;rs2549289 52 ENSG00000103018 CYB5B 16 69458428 69500169 1 protein_coding 80777 CYB5B 0.259577989859624 0.050545331 0 0 0 NA NA NA NA Yes hESC NA rs2549289 52 ENSG00000261527 RP11-343C2.10 16 69477143 69478193 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:hESC NA rs2549289 52 ENSG00000260108 RP11-140H17.1 16 69497747 69500167 1 3prime_overlapping_ncrna NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs2549289 52 ENSG00000181019 NQO1 16 69740899 69760854 -1 protein_coding 1728 NQO1 4.52404699215664e-11 -0.846833583 0 0 5 7.3228e-07 0.00231672094881091 eQTLGen_cis_eQTLs NA Yes Promoter_anchored_loops:EP_correlation_organ_oneway:IMR90:Mesenchymal_Stem_Cell 1.43615e-08 rs2549289;rs2549289:rs3874602 52 ENSG00000238683 snoU13 16 69742475 69742578 -1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs2549289 52 ENSG00000261602 CTD-2033A16.1 16 69743777 69744486 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs2549289 52 ENSG00000262136 CTD-2033A16.3 16 69760916 69776466 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell 1.43615e-08 rs2549289:rs3874602 52 ENSG00000141101 NOB1 16 69775770 69788843 -1 protein_coding 28987 NOB1 8.61136358207129e-08 -0.798435745 0 0 120 8.27179e-06 0.0087216 GTEx/v8/Testis NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell 1.43615e-08 rs2549289;rs2549289:rs3874602 52 ENSG00000260290 CTD-2033A16.2 16 69790439 69791840 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell 1.43615e-08 rs2549289:rs3874602 52 ENSG00000198373 WWP2 16 69796209 69975644 1 protein_coding 11060 WWP2 0.977902374453959 0.163310833 6 17.58 212 1.5352e-31 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Spleen:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Cerebellar_Hemisphere NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell 1.43615e-08 rs2549289;rs3874602;rs2549289:rs3874602 52 ENSG00000252670 Y_RNA 16 69814940 69815031 1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell 1.43615e-08 rs2549289:rs3874602 52 ENSG00000252443 SNORA62 16 69819897 69820016 -1 snoRNA 6044 SNORA62 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell 1.43615e-08 rs2549289:rs3874602 52 ENSG00000208017 MIR140 16 69966984 69967083 1 miRNA 406932 MIR140 NA NA 5 17.58 0 NA NA NA NA No NA NA rs2549289 52 ENSG00000157322 CLEC18A 16 69984810 69998141 1 protein_coding 348174 CLEC18A 0.144113695415487 -0.618370851 11 17.58 222 0 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid:GTEx/v6/Uterus:GTEx/v6/Vagina NA No NA 1.43615e-08 rs2549289;rs3874602 52 ENSG00000196696 PDXDC2P 16 70010200 70099851 -1 processed_transcript 283970 PDXDC2P NA NA 89 15.63 218 1.10807e-207 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/HIPP:BRAINEAC/WHMT:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid:GTEx/v6/Vagina NA Yes Promoter_anchored_loops 1.43615e-08 rs2549289;rs3874602;rs2549289:rs3874602 52 ENSG00000226232 RP11-419C5.2 16 70010291 70030091 -1 pseudogene NA NA NA NA 42 9.947 205 1.10807e-207 0 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Artery_Tibial:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Muscle_Skeletal:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid NA Yes Promoter_anchored_loops 1.43615e-08 rs2549289;rs3874602 52 ENSG00000255185 PDXDC2P 16 70044654 70099848 -1 pseudogene 109731405 PDXDC2P NA NA 53 15.63 204 5.29776e-118 0 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina NA Yes Promoter_anchored_loops 1.43615e-08 rs2549289;rs3874602;rs2549289:rs3874602 52 ENSG00000239118 MIR1972-2 16 70064249 70064325 1 miRNA 100422922 MIR1972-2 NA NA 9 15.63 0 NA NA NA NA No NA NA rs2549289 52 ENSG00000241183 RP11-106J23.1 16 70113032 70113527 -1 pseudogene NA NA NA NA 19 14.17 0 NA NA NA NA Yes Promoter_anchored_loops NA rs2549289 52 ENSG00000090857 PDPR 16 70147529 70195203 1 protein_coding 55066 PDPR 4.85026223543158e-08 2.680287222 58 12.39 211 2.78595e-27 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellum:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v7/Whole_Blood:GTEx/v7/Brain_Cerebellum:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pituitary:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid:GTEx/v6/Brain_Cerebellum NA Yes Promoter_anchored_loops:Left_Ventricle 1.43615e-08 rs2549289;rs3874602;rs3874602:rs2549289 52 ENSG00000247228 RP11-296I10.3 16 70190243 70207351 -1 antisense 400541 LOC400541 NA NA 15 10.13 205 4.36202e-61 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Testis:GTEx/v7/Thyroid NA No NA 1.43615e-08 rs2549289;rs3874602 52 ENSG00000157335 CLEC18C 16 70207225 70221264 1 protein_coding 283971 CLEC18C 0.876992461970907 -0.678230716 6 8.453 216 8.35278e-186 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/Monocyte_non_classical:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cortex:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Kidney_Cortex:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cortex:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Adrenal_Gland:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Cortex:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Transverse:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid NA No NA 1.43615e-08 rs2549289;rs3874602 52 ENSG00000261145 RP11-296I10.5 16 70236257 70236362 1 pseudogene NA NA NA NA 10 7.612 0 NA NA NA NA No NA 1.73101e-08 rs3874602;rs2549289 52 ENSG00000269746 AC009060.1 16 70239303 70239683 -1 protein_coding NA NA NA NA 7 5.864 37 2.36124e-11 1.25072e-08 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v7/Adrenal_Gland NA No NA 1.73101e-08 rs3874602;rs2549289 52 ENSG00000261556 RP11-296I10.6 16 70253477 70279519 -1 pseudogene 100506060 SMG1P7 NA NA 8 16.36 223 0 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Thyroid:GTEx/v6/Uterus:GTEx/v6/Vagina NA Yes Mesenchymal_Stem_Cell 1.43615e-08 rs2549289;rs3874602 52 ENSG00000269866 FKSG63 16 70258261 70258641 1 protein_coding NA NA NA NA 3 15.37 0 NA NA NA NA Yes Promoter_anchored_loops:Mesenchymal_Stem_Cell NA rs3874602;rs2549289 52 ENSG00000238734 snoU13 16 70266882 70266985 -1 snoRNA NA NA NA NA 3 15.37 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs2549289 52 ENSG00000223496 EXOSC6 16 70284134 70285833 -1 protein_coding 118460 EXOSC6 0.49417393399594 -0.495643468 4 16.36 224 0 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Stomach:GTEx/v6/Thyroid NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 1.43615e-08 rs2549289;rs3874602 52 ENSG00000090861 AARS 16 70286198 70323446 -1 protein_coding 16 AARS 4.67831529001667e-05 NA 10 16.36 200 5.4272e-43 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pituitary:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Testis:GTEx/v6/Muscle_Skeletal:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Promoter_anchored_loops:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:hESC 1.73101e-08 rs2549289;rs3874602;rs2549289:rs3874602 52 ENSG00000265230 RN7SL407P 16 70298072 70298383 -1 misc_RNA NA RN7SL407P NA NA 4 5.542 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs2549289;rs3874602 52 ENSG00000265648 RN7SL279P 16 70309972 70310251 1 misc_RNA 106480998 RN7SL279P NA NA 4 2.423 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:hESC NA rs2549289;rs3874602;rs2549289:rs3874602 52 ENSG00000157349 DDX19B 16 70323566 70369186 1 protein_coding 11269 DDX19B 0.0357117798271904 -0.91354014 6 15.07 183 7.2534e-14 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood:GTEx/v7/Whole_Blood NA Yes Promoter_anchored_loops:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:hESC 2.97577e-08 rs3874602;rs2549289;rs2549289:rs3874602 52 ENSG00000260537 RP11-529K1.3 16 70333097 70400163 1 protein_coding NA NA NA NA 25 15.07 1 3.35392e-05 0.0203283060511311 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:hESC NA rs2549289;rs3874602;rs2549289:rs3874602 52 ENSG00000261777 RP11-529K1.2 16 70349543 70380650 -1 processed_transcript 100506083 LOC100506083 NA NA 10 13.27 17 8.16618e-07 1.89762e-15 PsychENCODE_eQTLs:GTEx/v8/Muscle_Skeletal:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Thyroid:GTEx/v7/Cells_Transformed_fibroblasts NA Yes Promoter_anchored_loops NA rs2549289;rs3874602;rs2549289:rs3874602 52 ENSG00000168872 DDX19A 16 70380732 70407286 1 protein_coding 55308 DDX19A 0.92306130907744 -0.880372708 23 6.819 130 3.8913e-07 0.00121883313741261 eQTLGen_cis_eQTLs:GTEx/v8/Heart_Atrial_Appendage NA Yes Promoter_anchored_loops NA rs3874602;rs2549289;rs2549289:rs3874602 52 ENSG00000157350 ST3GAL2 16 70413338 70473140 -1 protein_coding 6483 ST3GAL2 0.947101298960924 -2.380757111 19 14.9 18 3.12847e-06 0.00235961314496937 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v7/Artery_Tibial NA No NA NA rs2549289;rs3874602 52 ENSG00000260111 RP11-529K1.4 16 70413360 70433405 1 antisense NA NA NA NA 14 9.003 17 3.12847e-06 0.00235961314496937 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Promoter_anchored_loops NA rs2549289;rs3874602;rs3874602:rs2549289 52 ENSG00000240043 RPS27P26 16 70478577 70478815 -1 pseudogene 100271583 RPS27P26 NA NA 4 14.9 0 NA NA NA NA No NA NA rs2549289 52 ENSG00000200153 RNU6-23P 16 70479196 70479302 -1 snRNA 100873755 RNU6-23P NA NA 4 14.9 0 NA NA NA NA No NA NA rs2549289 52 ENSG00000157353 FUK 16 70488324 70514177 1 protein_coding 197258 FUK 8.47562895767482e-16 -0.365983176 0 0 2 4.34591e-05 0.000986832 GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic NA Yes Promoter_anchored_loops NA rs2549289;rs3874602:rs2549289 52 ENSG00000103051 COG4 16 70514471 70557468 -1 protein_coding 25839 COG4 4.38858303424531e-06 -0.355868323 0 0 213 3.4932e-121 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:GTEx/v8/Whole_Blood:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Muscle_Skeletal:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v7/Whole_Blood:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v6/Whole_Blood:GTEx/v6/Testis NA Yes Adult_Cortex:Fetal_Cortex:GM12878:Mesenchymal_Stem_Cell:hESC 1.43615e-08 rs2549289;rs3874602;rs2549289:rs3874602 52 ENSG00000189091 SF3B3 16 70557691 70608820 1 protein_coding 23450 SF3B3 0.999962978336449 -0.692592188 0 0 213 4.7029e-61 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cerebellum:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Lung:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Thyroid NA Yes Adult_Cortex:Fetal_Cortex:GM12878:Mesenchymal_Stem_Cell:hESC 1.43615e-08 rs2549289;rs3874602;rs2549289:rs3874602 52 ENSG00000221514 SNORD111B 16 70563412 70563491 1 snoRNA 100113402 SNORD111B NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.43615e-08 rs2549289:rs3874602 52 ENSG00000221066 SNORD111 16 70571908 70572001 1 snoRNA 692214 SNORD111 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.43615e-08 rs2549289:rs3874602 52 ENSG00000260023 RP11-49C24.1 16 70610204 70611571 1 lincRNA NA NA NA NA 0 0 4 2.4675e-06 0.00719655632351158 eQTLGen_cis_eQTLs NA Yes Promoter_anchored_loops:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:hESC NA rs2549289;rs2549289:rs3874602 52 ENSG00000157368 IL34 16 70613798 70694585 1 protein_coding 146433 IL34 0.114215553005568 0.464090195 0 0 187 5.40183e-13 2.78839e-33 PsychENCODE_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v6/Lung:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes Promoter_anchored_loops:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:hESC NA rs2549289;rs3874602;rs2549289:rs3874602 52 ENSG00000268927 FLJ00418 16 70695570 70699739 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs2549289:rs3874602 52 ENSG00000103043 VAC14 16 70721342 70835064 -1 protein_coding 55697 VAC14 0.629700168448247 -0.188844742 0 0 122 5.06388e-07 0.00378734 eQTLGen_cis_eQTLs:GTEx/v7/Prostate NA Yes Promoter_anchored_loops 1.43615e-08 rs2549289;rs3874602;rs2549289:rs3874602 52 ENSG00000262890 RP11-424M24.5 16 70835986 70836743 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 1.43615e-08 rs2549289:rs3874602 52 ENSG00000180917 CMTR2 16 71315292 71323618 -1 protein_coding 55783 CMTR2 1.4241642942685e-07 -0.541219806 0 0 5 8.1399e-06 6.83405e-10 GTEx/v8/Brain_Cerebellum:GTEx/v8/Nerve_Tibial NA No NA NA rs2549289 52 ENSG00000167377 ZNF23 16 71481500 71496998 -1 protein_coding 7571 ZNF23 8.37282562295769e-07 -0.580455729 0 0 19 5.0383e-11 0 eQTLGen_trans_eQTLs:BloodeQTL NA No NA NA rs62064364;rs2549289 52:57 ENSG00000157429 ZNF19 16 71498453 71598992 -1 protein_coding 7567 ZNF19 1.78277433532571e-05 -0.369655026 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs2549289:rs3874602 52 ENSG00000252339 RNU6-1061P 16 71597333 71597431 -1 snRNA 106480033 RNU6-1061P NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs2549289:rs3874602 52 ENSG00000260886 RP11-432I5.1 16 71599692 71612090 1 antisense 100132529 TAT-AS1 NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs2549289:rs3874602 52 ENSG00000260612 RP11-432I5.4 16 71760878 71761895 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs2549289 52 ENSG00000166747 AP1G1 16 71762913 71843104 -1 protein_coding 164 AP1G1 0.999975846160012 -1.062854701 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs2549289 52 ENSG00000262140 RP11-417N10.3 16 71867690 71869835 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex NA rs2549289 52 ENSG00000263968 RN7SL381P 16 85692984 85693279 1 misc_RNA 106479362 RN7SL381P NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs4843227 53 ENSG00000131148 EMC8 16 85805364 85833214 -1 protein_coding 10328 EMC8 0.25900842753047 1.406420611 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000252311 RNU1-103P 16 85815381 85815505 -1 snRNA 106481623 RNU1-103P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000270184 RP11-568J23.5 16 85817988 85821223 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000270159 RP11-568J23.6 16 85826021 85826539 1 antisense 101928557 LOC101928557 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000131143 COX4I1 16 85832239 85840650 1 protein_coding 1327 COX4I1 0.722238025462968 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000270698 RP11-568J23.7 16 85848031 85848668 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000214259 RP11-568J23.1 16 85849479 85850142 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000140968 IRF8 16 85932409 85956215 1 protein_coding 3394 IRF8 0.926540237878288 -0.298038966 0 0 14 5.5746e-07 0.00491958372753075 eQTLGen_trans_eQTLs NA Yes IMR90:Mesenchymal_Stem_Cell 1.10154e-12 rs62064364;rs4843227:rs34264796 53:57 ENSG00000268804 RP11-542M13.3 16 85968887 85969829 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.10154e-12 rs4843227:rs34264796 53 ENSG00000269667 RP11-542M13.2 16 86015356 86018329 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000261177 RP11-805I24.1 16 86115015 86123132 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000268505 RP11-805I24.3 16 86226399 86232519 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs4843227 53 ENSG00000269186 LINC01082 16 86229787 86233326 1 lincRNA 100506542 LINC01082 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs4843227 53 ENSG00000268473 RP11-158I3.1 16 86468436 86469490 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs4843227 53 ENSG00000268388 FENDRR 16 86508135 86542705 -1 lincRNA 400550 FENDRR NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs4843227 53 ENSG00000103241 FOXF1 16 86544133 86548076 1 protein_coding 2294 FOXF1 0.909443996784091 0.70842486 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs4843227 53 ENSG00000270020 RP11-463O9.9 16 86553989 86557503 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs4843227 53 ENSG00000243697 RP11-463O9.1 16 86559063 86559858 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs4843227 53 ENSG00000103248 MTHFSD 16 86563782 86588841 -1 protein_coding 64779 MTHFSD 3.76450383104559e-09 1.149865082 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.10154e-12 rs4843227:rs34264796 53 ENSG00000260944 RP11-463O9.5 16 86598751 86601367 -1 antisense 103752587 FOXC2-AS1 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.10154e-12 rs4843227:rs34264796 53 ENSG00000176692 FOXC2 16 86600857 86602539 1 protein_coding 2303 FOXC2 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.10154e-12 rs4843227:rs34264796 53 ENSG00000176678 FOXL1 16 86609974 86615303 1 protein_coding 2300 FOXL1 0.0639302371886436 -1.050807064 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.10154e-12 rs4843227:rs34264796 53 ENSG00000260387 RP11-463O9.6 16 86669934 86670751 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.10154e-12 rs4843227:rs34264796 53 ENSG00000261161 RP11-58A18.1 16 86679907 86702529 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.10154e-12 rs4843227:rs34264796 53 ENSG00000260026 CTD-2015G9.1 16 86754294 86755560 -1 lincRNA 101928614 LINC02189 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.10154e-12 rs4843227:rs34264796 53 ENSG00000261175 CTD-2015G9.2 16 86755697 86771432 1 lincRNA 102724344 LINC02188 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.10154e-12 rs4843227:rs34264796 53 ENSG00000260795 RP11-107C10.1 16 86939781 86940078 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000232190 RP11-134D3.1 16 87091390 87097597 1 processed_transcript 440390 LINC02181 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000261363 RP11-134D3.2 16 87100311 87103354 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000260456 C16orf95 16 87117168 87351022 -1 protein_coding 100506581 C16orf95 NA 0.915813928 56 16.49 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.10154e-12 rs4843227;rs34264796 53 ENSG00000261095 RP11-899L11.1 16 87245728 87260036 1 lincRNA 101928708 LOC101928708 NA NA 13 9.666 24 1.79445e-08 2.6028e-14 GTEx/v8/Nerve_Tibial NA No NA 1.10154e-12 rs4843227 53 ENSG00000261651 RP11-899L11.3 16 87249521 87250058 1 antisense NA NA NA NA 6 7.988 51 1.65246e-15 5.1924e-14 GTEx/v8/Testis:GTEx/v7/Testis:GTEx/v6/Testis NA No NA 1.10154e-12 rs4843227 53 ENSG00000261697 RP11-178L8.5 16 87296365 87326044 -1 sense_intronic 101928682 LOC101928682 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000243705 RP11-178L8.1 16 87301791 87301943 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000239186 snoU13 16 87348326 87348429 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000270006 RP11-178L8.7 16 87351115 87351643 1 antisense 101928659 LOC101928659 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs4843227 53 ENSG00000103264 FBXO31 16 87360593 87425748 -1 protein_coding 79791 FBXO31 0.911167117005807 -0.052861849 0 0 4 4.0513e-08 0.000158559015665631 eQTLGen_cis_eQTLs NA No NA NA rs4843227 53 ENSG00000140941 MAP1LC3B 16 87417601 87438385 1 protein_coding 81631 MAP1LC3B 0.0617608767755467 1.467386741 0 0 27 1.12e-05 0.016474472240305 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA 1.58088e-08 rs4843227 53 ENSG00000261592 RP11-178L8.3 16 87430310 87433901 -1 antisense NA NA NA NA 0 0 1 4.14292418825e-05 0.049 DICE/T_CD4_memory_TREG NA No NA NA rs4843227 53 ENSG00000140948 ZCCHC14 16 87439852 87525651 -1 protein_coding 23174 ZCCHC14 0.94883572655475 -1.830202428 0 0 36 7.0386e-09 4.51467268623025e-05 eQTLGen_cis_eQTLs NA Yes Promoter_anchored_loops NA rs4843227 53 ENSG00000260750 RP11-482M8.1 16 87526161 87549241 1 lincRNA 101928737 LOC101928737 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs4843227 53 ENSG00000104731 KLHDC4 16 87730091 87799598 -1 protein_coding 54758 KLHDC4 3.7052834500335e-19 0.271599887 0 0 3 1.1889e-07 0.000395058631717564 eQTLGen_cis_eQTLs NA No NA NA rs4843227 53 ENSG00000260177 RP4-536B24.3 16 87813740 87840082 -1 lincRNA NA NA NA NA 0 0 1 0.000477965 0.031844338996214 PsychENCODE_eQTLs NA No NA NA rs4843227 53 ENSG00000167721 TSR1 17 2225797 2240801 -1 protein_coding 55720 TSR1 8.33290388723747e-20 NA 0 0 0 NA NA NA NA Yes Mesendoderm 1.43417e-09 rs7219015 54 ENSG00000141258 SGSM2 17 2240792 2284352 1 protein_coding 9905 SGSM2 5.55963371668394e-08 0.410081586 0 0 0 NA NA NA NA Yes Mesendoderm 1.43417e-09 rs7219015 54 ENSG00000263345 RP1-59D14.5 17 2278355 2282600 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.43417e-09 rs7219015 54 ENSG00000070444 MNT 17 2287354 2304412 -1 protein_coding 4335 MNT 0.96048045983846 -0.896442606 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.43417e-09 rs7219015 54 ENSG00000262456 RP1-59D14.1 17 2288141 2289958 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.43417e-09 rs7219015 54 ENSG00000205821 AC006435.1 17 2310279 2318731 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.43417e-09 rs7219015 54 ENSG00000262953 EIF4A1P9 17 2489624 2491160 -1 pseudogene 642746 EIF4A1P9 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.43417e-09 rs7219015 54 ENSG00000007168 PAFAH1B1 17 2496504 2588909 1 protein_coding 5048 PAFAH1B1 0.99963285344523 -1.250002453 5 7.114 4 1.0504e-19 0 eQTLGen_cis_eQTLs:GTEx/v8/Cells_Cultured_fibroblasts NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.43417e-09 rs7219015 54 ENSG00000262480 SAMD11P1 17 2516578 2517238 -1 pseudogene 100421331 SAMD11P1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.43417e-09 rs7219015 54 ENSG00000239024 snoU13 17 2558973 2559076 1 snoRNA NA NA NA NA 3 7.114 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.43417e-09 rs7219015 54 ENSG00000239884 RN7SL608P 17 2584242 2584528 1 misc_RNA 106480521 RN7SL608P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.43417e-09 rs7219015 54 ENSG00000272770 RP11-74E22.5 17 2586599 2588382 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.43417e-09 rs7219015 54 ENSG00000272911 RP11-74E22.6 17 2591767 2592254 1 lincRNA NA NA NA NA 0 0 6 2.99779e-07 7.89769e-49 GTEx/v8/Whole_Blood:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Thyroid NA Yes IMR90:Mesenchymal_Stem_Cell 1.43417e-09 rs7219015 54 ENSG00000221882 OR3A2 17 3181193 3182268 -1 protein_coding 4995 OR3A2 0.564393310538053 0.678905475 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs7219015 54 ENSG00000262670 RP11-64J4.2 17 3182069 3289633 -1 sense_overlapping NA NA NA NA 0 0 2 0.000307342 0.0220486993831461 PsychENCODE_eQTLs NA No NA NA rs7219015 54 ENSG00000252456 RNA5SP434 17 3960050 3960170 -1 rRNA 100873684 RNA5SP434 NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs7219015 54 ENSG00000141034 GID4 17 17942606 17971718 1 protein_coding 79018 GID4 0.937456357393192 -1.872939163 0 0 9 9.6032e-07 0.00784332782583341 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000266677 RP11-258F1.1 17 18075939 18088067 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex NA rs72639204 55 ENSG00000091542 ALKBH5 17 18086392 18113268 1 protein_coding 54890 ALKBH5 0.803934845862911 0.479105093 0 0 0 NA NA NA NA Yes Adult_Cortex NA rs72639204 55 ENSG00000260647 RP1-178F10.1 17 18171394 18172142 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs72639204 55 ENSG00000220161 RP1-37N7.3 17 18314473 18317694 1 lincRNA 400579 LINC02076 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 9.09913e-12 rs72639204 55 ENSG00000205266 AL353997.3 17 18319042 18328411 1 processed_transcript NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 9.09913e-12 rs72639204 55 ENSG00000230662 TNPO1P2 17 18363705 18366369 1 pseudogene 252968 TNPO1P2 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs72639204 55 ENSG00000213077 FAM106A 17 18427880 18430160 -1 protein_coding 80039 FAM106A NA NA 0 0 36 NA 0.009 CMC_NoSVA_cis NA No NA NA rs72639204 55 ENSG00000154874 CCDC144B 17 18441117 18528930 -1 pseudogene 284047 CCDC144B NA NA 0 0 33 1.2004e-14 0 eQTLGen_cis_eQTLs NA Yes Promoter_anchored_loops NA rs72639204 55 ENSG00000262262 RP11-815I9.3 17 18541332 18541683 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs72639204 55 ENSG00000174977 AC026271.5 17 18553508 18554855 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs72639204 55 ENSG00000108448 TRIM16L 17 18601311 18639431 1 protein_coding 147166 TRIM16L 0.0168793918042221 -0.502237524 0 0 18 7.23516e-05 3.86197e-05 GTEx/v8/Thyroid NA No NA NA rs72639204 55 ENSG00000171931 FBXW10 17 18647326 18682662 1 protein_coding 10517 FBXW10 NA 0.321168025 0 0 30 0.000238173227544311 0.021513312902328 BRAINEAC/CRBL NA No NA NA rs72639204 55 ENSG00000141127 PRPSAP2 17 18743398 18834581 1 protein_coding 5636 PRPSAP2 0.0720452015966568 NA 0 0 33 1.8497e-23 0 eQTLGen_cis_eQTLs NA No NA NA rs72639204 55 ENSG00000154025 SLC5A10 17 18853658 18925908 1 protein_coding 125206 SLC5A10 3.65971963018288e-12 0.067262322 0 0 32 7.15418e-73 0 DICE/T_CD4_naive:DICE/NK:DICE/T_CD4_TH1_17:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Esophagus_Mucosa NA No NA 9.09913e-12 rs72639204 55 ENSG00000188522 FAM83G 17 18872102 18908117 -1 protein_coding 644815 FAM83G 0.0157267816621613 0.420922474 0 0 19 4.8588e-08 0.000196190114549712 eQTLGen_cis_eQTLs:GTEx/v8/Cells_Cultured_fibroblasts NA No NA NA rs72639204 55 ENSG00000154016 GRAP 17 18923986 18950950 -1 protein_coding 10750 GRAP 0.21706363500994 -1.253937955 0 0 35 3.27170000000001e-310 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood:GTEx/v8/Testis:GTEx/v7/Testis NA No NA NA rs72639204 55 ENSG00000265185 SNORD3B-1 17 18965225 18965807 1 lincRNA 26851 SNORD3B-1 NA NA 1 2.259 35 1.22515e-17 7.22103e-23 PsychENCODE_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Lung:GTEx/v8/Ovary:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Artery_Tibial:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Lung:GTEx/v7/Ovary:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Stomach:GTEx/v7/Testis NA No NA NA rs72639204 55 ENSG00000262074 SNORD3B-2 17 18966762 18967449 -1 lincRNA 780852 SNORD3B-2 NA NA 1 2.259 37 1.39833e-37 1.94149203504236e-34 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Transverse:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Artery_Tibial:GTEx/v7/Testis NA No NA 9.09913e-12 rs72639204 55 ENSG00000265746 KYNUP2 17 18985750 18988147 1 pseudogene 729310 KYNUP2 NA NA 0 0 17 5.64449e-07 0.000468384074941452 BIOSQTL/BIOS_eQTL_geneLevel NA No NA NA rs72639204 55 ENSG00000263394 RP11-160E2.19 17 18994382 18995138 -1 lincRNA NA NA NA NA 0 0 21 3.03819e-63 0 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA NA rs72639204 55 ENSG00000228157 AC007952.5 17 18996287 19000150 1 protein_coding NA NA NA NA 0 0 36 1.6122e-150 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Lung:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Lung:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Thyroid NA No NA NA rs72639204 55 ENSG00000262202 SNORD3D 17 19015313 19015949 -1 lincRNA 780854 SNORD3D NA NA 0 0 36 2.30218e-26 3.25282e-21 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v7/Artery_Aorta:GTEx/v7/Testis:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Testis NA Yes Promoter_anchored_loops NA rs72639204 55 ENSG00000189152 GRAPL 17 19030782 19062489 1 protein_coding 400581 GRAPL NA -0.908273576 0 0 33 1.01129e-91 0 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous NA Yes EP_links_oneway:Promoter_anchored_loops NA rs72639204 55 ENSG00000214844 AC007952.1 17 19041448 19041895 -1 protein_coding NA NA NA NA 0 0 29 7.42729e-44 0 BIOSQTL/BIOS_eQTL_geneLevel NA No NA NA rs72639204 55 ENSG00000262319 CTC-457L16.2 17 19044330 19047002 -1 antisense NA NA NA NA 0 0 37 9.8349e-273 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Spleen:GTEx/v6/Thyroid:GTEx/v6/Uterus NA No NA 9.09913e-12 rs72639204 55 ENSG00000266664 RP11-160E2.21 17 19053592 19054599 1 sense_intronic NA NA NA NA 0 0 33 3.38098e-45 0 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v6/Cells_EBV-transformed_lymphocytes NA No NA NA rs72639204 55 ENSG00000197665 AC007952.6 17 19059040 19062424 -1 protein_coding NA NA NA NA 0 0 33 1.01129e-91 0 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA NA rs72639204 55 ENSG00000262292 RP11-160E2.11 17 19064102 19065587 1 lincRNA NA NA NA NA 0 0 33 6.21872e-34 0 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v6/Whole_Blood:GTEx/v6/Lung:GTEx/v6/Spleen NA No NA NA rs72639204 55 ENSG00000261987 KYNUP1 17 19070209 19072981 -1 pseudogene 729321 KYNUP1 NA NA 0 0 33 1.37077e-08 2.32517584142301e-05 BIOSQTL/BIOS_eQTL_geneLevel NA No NA NA rs72639204 55 ENSG00000263934 SNORD3A 17 19091329 19092027 1 lincRNA 780851 SNORD3A NA NA 1 5.03 36 6.99849e-05 0.009 CMC_SVA_cis:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Adipose_Subcutaneous NA No NA NA rs72639204 55 ENSG00000264940 SNORD3C 17 19092978 19093558 -1 lincRNA 780853 SNORD3C NA NA 1 5.03 0 NA NA NA NA No NA NA rs72639204 55 ENSG00000263206 KYNUP3 17 19111897 19114672 1 pseudogene 729323 KYNUP3 NA NA 0 0 33 2.04993e-09 5.9708621925006e-06 BIOSQTL/BIOS_eQTL_geneLevel NA No NA NA rs72639204 55 ENSG00000072134 EPN2 17 19118928 19240028 1 protein_coding 22905 EPN2 0.177426616638577 -1.236993267 26 15.38 36 7.17981e-86 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA No NA 9.09913e-12 rs72639204 55 ENSG00000230493 AC106017.1 17 19122674 19125839 1 protein_coding NA NA NA NA 0 0 33 7.17981e-86 0 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000235397 EPN2-AS1 17 19199909 19209574 -1 antisense 100874018 EPN2-AS1 NA NA 10 3.938 0 NA NA NA NA Yes EP_links_oneway:Promoter_anchored_loops:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 9.09913e-12 rs72639204 55 ENSG00000265263 RP11-135L13.4 17 19237621 19239440 -1 antisense NA NA NA NA 5 2.331 36 2.35514e-25 1.76201104193586e-05 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 9.09913e-12 rs72639204 55 ENSG00000108641 B9D1 17 19240867 19281495 -1 protein_coding 27077 B9D1 0.119139655847397 -0.312974933 10 10.44 36 8.54505e-15 1.0372e-10 PsychENCODE_eQTLs:CMC_SVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellum:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Vagina:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cerebellum:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial NA No NA NA rs72639204 55 ENSG00000221540 MIR1180 17 19247819 19247887 -1 miRNA 100302256 MIR1180 NA NA 7 4.334 0 NA NA NA NA Yes Promoter_anchored_loops:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 9.09913e-12 rs72639204 55 ENSG00000166484 MAPK7 17 19281034 19286857 1 protein_coding 5598 MAPK7 0.232913565027181 -0.294428857 5 10.44 35 4.1644e-47 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Testis NA No NA NA rs72639204 55 ENSG00000166482 MFAP4 17 19286755 19290553 -1 protein_coding 4239 MFAP4 0.559557121872237 -0.28335938 8 13.36 32 6.57506e-06 0.00462707182320442 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Promoter_anchored_loops NA rs72639204 55 ENSG00000128482 RNF112 17 19314438 19320589 1 protein_coding 7732 RNF112 0.0036567395135091 0.565623806 0 0 37 6.9511e-257 0 DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Muscle_Skeletal:GTEx/v7/Ovary:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Testis:GTEx/v6/Adrenal_Gland:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Tibial:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Ovary:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Testis NA Yes Promoter_anchored_loops 9.09913e-12 rs72639204 55 ENSG00000265126 CTB-187M2.2 17 19315099 19316431 -1 antisense NA NA NA NA 0 0 33 1.13308e-36 0 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Promoter_anchored_loops NA rs72639204 55 ENSG00000227078 AC004448.2 17 19322348 19327670 1 lincRNA NA NA NA NA 0 0 35 5.48557e-16 7.54629e-12 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Testis:GTEx/v7/Artery_Tibial:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Testis:GTEx/v6/Artery_Tibial:GTEx/v6/Testis NA Yes Promoter_anchored_loops:Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.09913e-12 rs72639204 55 ENSG00000265335 snoMe28S-Am2634 17 19323592 19323655 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.09913e-12 rs72639204 55 ENSG00000235979 AC004448.5 17 19342456 19364308 -1 lincRNA NA NA NA NA 0 0 36 1.18488e-13 4.65873e-12 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Testis:GTEx/v7/Artery_Tibial:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Ovary:GTEx/v7/Testis:GTEx/v6/Artery_Tibial:GTEx/v6/Esophagus_Muscularis NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 9.09913e-12 rs72639204 55 ENSG00000189343 RPS2P46 17 19349246 19350169 -1 pseudogene 125208 RPS2P46 NA NA 0 0 3 4.64454e-07 7.02752e-24 GTEx/v8/Brain_Cerebellum NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.09913e-12 rs72639204 55 ENSG00000231477 CTB-187M2.1 17 19360393 19361712 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 9.09913e-12 rs72639204 55 ENSG00000263726 CTB-187M2.3 17 19374432 19396273 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 9.09913e-12 rs72639204 55 ENSG00000142494 SLC47A1 17 19398698 19482347 1 protein_coding 55244 SLC47A1 1.21582234978014e-09 0.242275499 0 0 35 2.25894e-07 5.31366e-78 GTEx/v8/Artery_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Stomach:GTEx/v6/Muscle_Skeletal NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm 9.09913e-12 rs72639204 55 ENSG00000228331 RPL17P43 17 19400256 19400841 1 pseudogene 729259 RPL17P43 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs72639204 55 ENSG00000262769 RP11-1113L8.1 17 19463424 19501235 -1 antisense NA NA NA NA 0 0 23 1.90461e-06 0.0057101683 GTEx/v6/Muscle_Skeletal NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000228983 AC025627.7 17 19483256 19499371 1 pseudogene NA NA NA NA 0 0 12 3.17259e-05 0.0389354 GTEx/v8/Breast_Mammary_Tissue NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000263107 RP11-1113L8.2 17 19485429 19485588 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000266179 RP11-1113L8.6 17 19504173 19504658 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000271900 RP11-1113L8.7 17 19505153 19505569 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000227225 MTND1P14 17 19505572 19506521 1 pseudogene 100873337 MTND1P14 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000242752 TRNAQ41P 17 19506587 19506658 -1 pseudogene 100189478 TRNAQ41P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000228725 MTND2P12 17 19507110 19508361 1 pseudogene 100873344 MTND2P12 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000224254 AC025627.4 17 19508767 19509246 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000231625 CTD-2104P17.1 17 19519102 19537138 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000072210 ALDH3A2 17 19551449 19580911 1 protein_coding 224 ALDH3A2 0.011288383677575 -0.885120975 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.09913e-12 rs72639204 55 ENSG00000264932 Y_RNA 17 19552686 19553248 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.09913e-12 rs72639204 55 ENSG00000252349 SNORA31 17 19565313 19565403 1 snoRNA 677814 SNORA31 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.09913e-12 rs72639204 55 ENSG00000180638 SLC47A2 17 19581601 19622292 -1 protein_coding 146802 SLC47A2 9.01734392930179e-14 -0.256342131 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.09913e-12 rs72639204 55 ENSG00000262681 RP11-311F12.1 17 19622372 19625741 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.09913e-12 rs72639204 55 ENSG00000264785 RP11-311F12.2 17 19640995 19641855 1 antisense NA NA NA NA 0 0 10 0.000124126 0.0101596358009625 PsychENCODE_eQTLs:GTEx/v8/Esophagus_Mucosa NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000108602 ALDH3A1 17 19641297 19652256 -1 protein_coding 218 ALDH3A1 1.32614029510281e-12 -0.113937156 0 0 1 9.29857e-05 1.19558e-05 GTEx/v8/Esophagus_Mucosa NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000230607 AC005722.4 17 19658557 19659520 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72639204 55 ENSG00000231096 AC015726.1 17 19743439 19743828 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesendoderm NA rs72639204 55 ENSG00000270091 RP11-78O7.2 17 19799903 19800600 -1 lincRNA NA NA NA NA 0 0 11 3.03000002052e-05 0.049 DICE/Monocyte_classical NA Yes IMR90 NA rs72639204 55 ENSG00000266126 RP11-209D14.4 17 19832685 19833050 -1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs72639204 55 ENSG00000225014 KCTD9P1 17 20015137 20016303 1 pseudogene 100422273 KCTD9P1 NA NA 0 0 0 NA NA NA NA Yes hESC NA rs72639204 55 ENSG00000212186 RNU6-258P 17 20029701 20029801 -1 snRNA 106481259 RNU6-258P NA NA 0 0 0 NA NA NA NA Yes hESC NA rs72639204 55 ENSG00000214832 UPF3AP2 17 20278682 20280153 -1 pseudogene 147150 UPF3AP2 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs72639204 55 ENSG00000124422 USP22 17 20902910 20947073 -1 protein_coding 23326 USP22 0.98329279247161 0.831753384 0 0 0 NA NA NA NA Yes IMR90 NA rs72639204 55 ENSG00000109113 RAB34 17 27041299 27045447 -1 protein_coding 83871 RAB34 4.67974818241862e-06 -0.411510256 0 0 15 1.6251e-08 0.000218613366645846 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000173812 EIF1 17 39845137 39848920 1 protein_coding 10209 EIF1 0.764131765089407 -0.215219225 0 0 3 5.2863e-08 0.000734173708269843 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000126581 BECN1 17 40962152 40985367 -1 protein_coding 8678 BECN1 0.998697775912791 -0.469387595 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs62064364 57 ENSG00000131467 PSME3 17 40976402 40995774 1 protein_coding 10197 PSME3 0.988103823358922 -1.745302754 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs62064364 57 ENSG00000131480 AOC2 17 40996617 41002724 1 protein_coding 314 AOC2 5.13940212237188e-10 0.041350631 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs62064364 57 ENSG00000267604 RP5-905N1.2 17 41860172 41862050 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs72828815 56 ENSG00000267166 RP11-527L4.5 17 41991801 42000369 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 2.96006e-08 rs72828815 56 ENSG00000267420 RP11-527L4.6 17 42004931 42009990 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 2.96006e-08 rs72828815 56 ENSG00000108312 UBTF 17 42282401 42298994 -1 protein_coding 7343 UBTF 0.999998048435118 -0.502117621 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs72828815 56 ENSG00000260793 RP5-882C2.2 17 42298769 42301078 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs72828815 56 ENSG00000221496 U3 17 42381382 42381570 1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs72828815 56 ENSG00000252628 RNU6-453P 17 42384456 42384541 1 snRNA 106479766 RNU6-453P NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs72828815 56 ENSG00000108309 RUNDC3A 17 42385781 42396039 1 protein_coding 10900 RUNDC3A 0.960334019427912 NA 0 0 37 1.5084e-08 7.68491834774255e-05 eQTLGen_cis_eQTLs NA Yes Fetal_Cortex NA rs72828815 56 ENSG00000013306 SLC25A39 17 42396993 42402238 -1 protein_coding 51629 SLC25A39 0.000102385453221932 NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs72828815 56 ENSG00000267211 RP5-1067M6.3 17 42405981 42408830 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs72828815 56 ENSG00000030582 GRN 17 42422614 42430470 1 protein_coding 2896 GRN 0.0602784288448183 -0.319175922 0 0 33 3.68342e-06 1.64305e-11 GTEx/v8/Esophagus_Muscularis NA Yes Fetal_Cortex NA rs72828815 56 ENSG00000161682 FAM171A2 17 42430583 42441243 -1 protein_coding 284069 FAM171A2 NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs72828815 56 ENSG00000267634 RPL7L1P5 17 42442382 42443119 -1 pseudogene 390800 RPL7L1P5 NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs72828815 56 ENSG00000005961 ITGA2B 17 42449548 42466873 -1 protein_coding 3674 ITGA2B 4.07385209926142e-05 -0.272814786 0 0 40 1.36829e-06 0.00389531 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Heart_Left_Ventricle NA No NA NA rs72828815 56 ENSG00000180340 FZD2 17 42634925 42636907 1 protein_coding 2535 FZD2 NA NA 0 0 11 1.1808e-12 0 eQTLGen_cis_eQTLs:BRAINEAC/THAL NA Yes Fetal_Cortex:Mesenchymal_Stem_Cell 2.96006e-08 rs72828815;rs62064364 56:57 ENSG00000267384 RP11-1072C15.3 17 42722779 42722958 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs72828815 56 ENSG00000266979 RP11-1072C15.2 17 42723732 42727717 -1 lincRNA 101927017 LINC01180 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs72828815 56 ENSG00000180336 C17orf104 17 42733762 42767676 1 protein_coding 284071 C17orf104 0.978536144710685 0.492102922 0 0 11 9.88207e-05 6.44645e-09 GTEx/v8/Brain_Cerebellum NA Yes IMR90:Mesenchymal_Stem_Cell:hESC NA rs72828815 56 ENSG00000180329 CCDC43 17 42750437 42767147 -1 protein_coding 124808 CCDC43 0.000257178261367413 -0.924707928 0 0 5 5.69215e-06 0.0157464 GTEx/v6/Thyroid NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs62064364;rs72828815:rs62064364 56:57 ENSG00000267160 RP11-1072C15.4 17 42751057 42753625 -1 antisense NA NA NA NA 0 0 13 5.51047e-05 0.00499469924355626 PsychENCODE_eQTLs NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 2.96006e-08 rs72828815 56 ENSG00000161692 DBF4B 17 42785976 42829632 1 protein_coding 80174 DBF4B 4.43213751313207e-08 -0.507761261 0 0 600 6.2875e-109 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/MEDU:BRAINEAC/OCTX:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Stomach:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 1.78443e-08 rs72828815;rs62064364;rs62064364:rs72828815 56:57 ENSG00000264251 RN7SL819P 17 42796232 42796498 -1 misc_RNA 106481145 RN7SL819P NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72828815 56 ENSG00000240305 RP11-1072C15.1 17 42797128 42797965 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72828815 56 ENSG00000073670 ADAM11 17 42836399 42859214 1 protein_coding 4185 ADAM11 0.0247363812211132 0.499905297 0 0 45 8.36262e-13 8.88745e-57 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Tibial:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Nerve_Tibial:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial NA Yes Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 2.96006e-08 rs72828815 56 ENSG00000267505 CTC-296K1.3 17 42870567 42871842 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72828815 56 ENSG00000267405 CTC-296K1.4 17 42872115 42875151 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs72828815 56 ENSG00000182963 GJC1 17 42875816 42908184 -1 protein_coding 10052 GJC1 0.944105282209013 -2.782988352 2 10.57 47 7.95055e-75 6.20148e-64 PsychENCODE_eQTLs:DICE/T_CD4_TFH:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Lung:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cerebellum:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Artery_Aorta:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Promoter_anchored_loops:Fetal_Cortex 2.96006e-08 rs72828815;rs62064364;rs62064364:rs72828815 56:57 ENSG00000131097 HIGD1B 17 42923721 42927848 1 protein_coding 51751 HIGD1B 0.00234558353981055 -0.344882798 4 11.65 46 1.62358e-12 2.20276e-08 eQTLGen_cis_eQTLs:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Lung:GTEx/v7/Lung:GTEx/v6/Lung NA Yes Fetal_Cortex 2.96006e-08 rs72828815;rs72828815:rs62064364 56:57 ENSG00000108883 EFTUD2 17 42927311 42977030 -1 protein_coding 9343 EFTUD2 0.999991435314757 0.211209263 19 13.21 960 1.7237e-52 0 eQTLGen_cis_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Stomach:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Colon_Sigmoid:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Colon_Sigmoid:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Adult_Cortex:Fetal_Cortex 5.71479e-11 rs72828815;rs62064364;rs72828815:rs62064364 56:57 ENSG00000264540 RN7SL405P 17 42961354 42961639 1 misc_RNA 106479373 RN7SL405P NA NA 3 4.493 0 NA NA NA NA Yes Promoter_anchored_loops NA rs72828815 56 ENSG00000167131 CCDC103 17 42976510 42982758 1 protein_coding 388389 CCDC103 0.00218552270508304 3.73457e-05 13 14.74 24 8.25754e-05 0.00745364483403081 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes Adult_Cortex:Fetal_Cortex 2.96006e-08 rs72828815;rs72828815:rs62064364 56:57 ENSG00000214447 FAM187A 17 42977135 42982758 1 protein_coding 100528020 FAM187A NA NA 13 14.74 5 8.25754e-05 0.0451752280364858 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes Adult_Cortex:Fetal_Cortex 2.96006e-08 rs72828815;rs72828815:rs62064364 56:57 ENSG00000224911 AC015936.3 17 42980529 42981914 -1 antisense NA NA NA NA 10 14.74 28 9.11876e-11 2.20799905680498e-08 PsychENCODE_eQTLs NA No NA 2.96006e-08 rs72828815 56 ENSG00000131095 GFAP 17 42982376 42994305 -1 protein_coding 2670 GFAP 2.22936756487388e-05 -0.265503436 17 14.74 46 5.283e-09 4.46688e-06 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Nerve_Tibial:GTEx/v7/Nerve_Tibial NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex 5.71479e-11 rs72828815;rs62064364:rs72828815 56:57 ENSG00000186185 KIF18B 17 43002077 43025082 -1 protein_coding 146909 KIF18B 8.30836645790731e-05 -0.301212733 25 16.04 0 NA NA NA NA No NA 2.96006e-08 rs72828815 56 ENSG00000267334 CTD-2534I21.8 17 43025280 43026307 1 lincRNA NA NA NA NA 16 16.04 1 6.3392201085e-06 0.049 DICE/T_CD4_TFH NA No NA NA rs72828815;rs62064364 56:57 ENSG00000131094 C1QL1 17 43037061 43045439 -1 protein_coding 10882 C1QL1 NA NA 16 16.04 6 3.08001e-05 0.00273173 GTEx/v8/Brain_Cerebellum NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell 2.96006e-08 rs72828815 56 ENSG00000267788 CTD-2534I21.9 17 43059882 43060140 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell 2.96006e-08 rs62064364:rs72828815 56:57 ENSG00000172992 DCAKD 17 43100708 43138473 -1 protein_coding 79877 DCAKD 0.0293860851896359 0.848595011 0 0 2220 1.0357e-73 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Tibial:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid NA No NA 5.71479e-11 rs72828815;rs62064364 56:57 ENSG00000136448 NMT1 17 43128978 43186384 1 protein_coding 4836 NMT1 0.998500520689071 0.032447683 0 0 2103 8.0218e-09 5.30846e-37 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:GTEx/v8/Artery_Aorta:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Nerve_Tibial:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Thyroid:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Thyroid NA Yes Promoter_anchored_loops 5.71479e-11 rs72828815;rs62064364 56:57 ENSG00000200888 Y_RNA 17 43148810 43148911 1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex 2.96006e-08 rs62064364:rs72828815 56:57 ENSG00000161714 PLCD3 17 43186335 43210721 -1 protein_coding 113026 PLCD3 0.000143297256551118 NA 0 0 39 4.33722e-06 6.62445e-07 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v7/Nerve_Tibial NA No NA 2.96006e-08 rs72828815;rs62064364 56:57 ENSG00000181513 ACBD4 17 43209967 43221548 1 protein_coding 79777 ACBD4 1.82643064951694e-05 -0.326407022 0 0 2417 2.5192e-10 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Thyroid:GTEx/v7/Artery_Tibial NA No NA 5.71479e-11 rs62064364;rs72828815 56:57 ENSG00000186834 HEXIM1 17 43224684 43229468 1 protein_coding 10614 HEXIM1 0.944400234927573 -1.495314951 0 0 4 3.04974e-05 1.44728e-06 DICE/T_CD4_memory_TREG:GTEx/v7/Artery_Tibial NA Yes Promoter_anchored_loops NA rs62064364;rs72828815 56:57 ENSG00000224505 AC002117.1 17 43227767 43238877 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 2.96006e-08 rs72828815:rs62064364 56:57 ENSG00000168517 HEXIM2 17 43238067 43247407 1 protein_coding 124790 HEXIM2 0.368236513275247 -0.798107113 0 0 744 3.0965e-09 2.59841496687021e-05 eQTLGen_cis_eQTLs NA Yes Adult_Cortex:Fetal_Cortex 5.71479e-11 rs62064364;rs72828815:rs62064364 56:57 ENSG00000267288 RP13-890H12.2 17 43246172 43248951 -1 antisense 105371795 LOC105371795 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 1.78443e-08 rs62064364 57 ENSG00000267121 CTD-2020K17.1 17 43268298 43299589 -1 antisense 339192 LOC339192 NA NA 0 0 2764 6.1175e-11 4.49824e-07 eQTLGen_cis_eQTLs:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum NA Yes Promoter_anchored_loops:EP_correlation_cell_type_oneway:Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell 5.71479e-11 rs62064364 57 ENSG00000184922 FMNL1 17 43298811 43324687 1 protein_coding 752 FMNL1 0.999687036181592 NA 0 0 3035 1.02394e-24 7.89257e-19 GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum NA Yes Promoter_anchored_loops:EP_correlation_cell_type_oneway:Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell 5.71479e-11 rs62064364 57 ENSG00000233175 CTD-2020K17.3 17 43315395 43319101 -1 antisense 107985040 LOC107985040 NA NA 0 0 31 8.3503e-06 2.69471e-16 eQTLGen_cis_eQTLs:GTEx/v8/Brain_Cerebellum:GTEx/v8/Esophagus_Muscularis:GTEx/v7/Brain_Cerebellum NA Yes Promoter_anchored_loops:GM12878:IMR90:Mesenchymal_Stem_Cell NA rs62064364 57 ENSG00000233483 CTD-2020K17.4 17 43322553 43326203 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 1.22349e-10 rs72828815:rs62064364:rs143234563 56:57 ENSG00000267278 MAP3K14-AS1 17 43325292 43345997 1 antisense 100133991 MAP3K14-AS1 NA NA 0 0 157 4.3219e-11 0 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 1.22349e-10 rs62064364;rs72828815:rs62064364:rs143234563 56:57 ENSG00000184361 SPATA32 17 43331760 43339479 -1 protein_coding 124783 SPATA32 2.95265117999751e-05 -0.414755704 0 0 204 1.7655e-15 0 DICE/T_CD4_TH2:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes Promoter_anchored_loops:Fetal_Cortex:Left_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm 1.22349e-10 rs62064364;rs62064364:rs143234563 57 ENSG00000006062 MAP3K14 17 43340488 43394414 -1 processed_transcript 9020 MAP3K14 NA NA 0 0 2 0.000176915 0.00353334 GTEx/v8/Brain_Cerebellum NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:Aorta:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 6.54636e-11 rs62064364;rs62064364:rs72828815:rs143234563 56:57 ENSG00000199953 RNA5SP443 17 43404732 43404863 -1 rRNA 106481745 RNA5SP443 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000267446 CTB-39G8.2 17 43448768 43449423 -1 lincRNA NA NA NA NA 0 0 1 7.27058875229e-05 0.049 DICE/T_CD4_TFH NA Yes IMR90:Mesenchymal_Stem_Cell 1.22349e-10 rs62064364;rs62064364:rs143234563 57 ENSG00000159314 ARHGAP27 17 43471275 43511787 -1 protein_coding 201176 ARHGAP27 0.00125584382196987 -0.761627793 86 18.95 3484 6.1081e-159 0 eQTLGen_cis_eQTLs:CMC_SVA_cis:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Artery_Aorta:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Testis:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Testis NA Yes Promoter_anchored_loops 5.71479e-11 rs62064364;rs72828815;rs72828815:rs62064364 56:57 ENSG00000267344 CTB-39G8.3 17 43474298 43474843 1 antisense NA NA NA NA 10 14.83 3120 2.30867e-09 2.50741e-06 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Lung:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Testis NA Yes Promoter_anchored_loops:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell 5.71479e-11 rs62064364;rs62064364:rs72828815:rs143234563 56:57 ENSG00000264038 AC091132.2 17 43494179 43494272 -1 miRNA NA NA NA NA 45 12.37 0 NA NA NA NA Yes Promoter_anchored_loops NA rs62064364;rs72828815:rs62064364 56:57 ENSG00000225190 PLEKHM1 17 43513266 43568115 -1 protein_coding 9842 PLEKHM1 0.840543209831517 -0.663068032 139 18.95 3452 2.9238e-83 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:BRAINEAC/CRBL:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Testis:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Muscle_Skeletal:GTEx/v6/Testis NA Yes Promoter_anchored_loops 5.71479e-11 rs62064364;rs72828815:rs62064364 56:57 ENSG00000236234 AC091132.1 17 43530210 43541431 1 antisense NA NA NA NA 54 15.35 3155 2.15286e-13 1.15993e-09 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Testis:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Testis:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Brain_Cerebellum:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Testis NA Yes EP_links_oneway:Promoter_anchored_loops 5.71479e-11 rs62064364;rs62064364:rs72828815 56:57 ENSG00000264225 RN7SL730P 17 43547899 43548188 -1 misc_RNA NA RN7SL730P NA NA 48 17.43 0 NA NA NA NA Yes Promoter_anchored_loops NA rs62064364 57 ENSG00000214425 LRRC37A4P 17 43578685 43627701 -1 pseudogene 55073 LRRC37A4P NA NA 22 6.951 3686 0 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_SVA_trans:CMC_NoSVA_cis:CMC_NoSVA_trans:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid:GTEx/v6/Uterus:GTEx/v6/Vagina NA No NA 5.71479e-11 rs62064364;rs72828815 56:57 ENSG00000131484 RP11-798G7.5 17 43580626 43612076 1 antisense NA NA NA NA 15 6.951 3580 1.0673e-113 0 DICE/T_CD4_TFH:DICE/T_CD4_memory_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Spleen:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Whole_Blood:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Whole_Blood:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Spleen:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops 5.71479e-11 rs62064364;rs72828815:rs62064364 56:57 ENSG00000265821 RN7SL739P 17 43603820 43604112 -1 misc_RNA NA RN7SL739P NA NA 0 0 3 5.53042e-05 0.0319479823032578 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Promoter_anchored_loops NA rs62064364 57 ENSG00000266918 RP11-798G7.8 17 43608943 43611204 1 lincRNA NA NA NA NA 0 0 3617 3.53408e-24 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/T_CD4_TFH:DICE/T_CD4_TH17:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_SVA_trans:CMC_NoSVA_cis:CMC_NoSVA_trans:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v6/Whole_Blood:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pituitary:GTEx/v6/Thyroid:GTEx/v6/Uterus NA Yes Promoter_anchored_loops 5.71479e-11 rs62064364 57 ENSG00000267198 RP11-798G7.6 17 43623170 43640596 1 lincRNA NA NA NA NA 0 0 3447 1.29008e-32 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Brain_Cerebellum:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v7/Adrenal_Gland:GTEx/v7/Brain_Cerebellum:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Testis NA No NA 5.71479e-11 rs62064364 57 ENSG00000267246 RP11-798G7.7 17 43627147 43636104 -1 processed_transcript NA NA NA NA 0 0 1478 1.81263e-37 0 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA 5.71479e-11 rs62064364 57 ENSG00000266504 RP11-798G7.4 17 43631076 43636436 -1 pseudogene NA NA NA NA 0 0 690 1.33274e-09 6.14062020264047e-06 BIOSQTL/BIOS_eQTL_geneLevel NA No NA 5.71479e-11 rs62064364 57 ENSG00000264070 DND1P1 17 43663237 43664295 1 pseudogene 644157 DND1P1 NA NA 91 15.96 3677 0 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid:GTEx/v6/Uterus:GTEx/v6/Vagina NA Yes Promoter_anchored_loops:EP_correlation_cell_type_oneway 5.71479e-11 rs62064364;rs72828815;rs72828815:rs62064364 56:57 ENSG00000263503 RP11-707O23.5 17 43678235 43679706 -1 pseudogene NA NA NA NA 84 12.86 3687 0 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Colon_Sigmoid:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Spleen:GTEx/v6/Testis:GTEx/v6/Thyroid:GTEx/v6/Vagina NA Yes Promoter_anchored_loops:EP_correlation_organ_oneway 5.71479e-11 rs62064364;rs72828815 56:57 ENSG00000204652 RPS26P8 17 43685909 43686349 1 pseudogene 644191 RPS26P8 NA NA 62 13.08 3448 4.17786e-46 4.18675e-41 PsychENCODE_eQTLs:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Testis:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pituitary:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pituitary:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.71479e-11 rs62064364;rs72828815:rs62064364:rs143234563 56:57 ENSG00000204650 CRHR1-IT1 17 43697694 43725582 1 pseudogene 147081 CRHR1-IT1 NA NA 123 15.14 3683 0 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid:GTEx/v6/Uterus:GTEx/v6/Vagina NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.71479e-11 rs62064364;rs72828815;rs72828815:rs62064364:rs143234563 56:57 ENSG00000120088 CRHR1 17 43699267 43913194 1 protein_coding 1394 CRHR1 0.792134286397601 2.038085631 933 19.39 3457 0 0 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/CRBL:BRAINEAC/FCTX:BRAINEAC/HIPP:BRAINEAC/MEDU:BRAINEAC/TCTX:BRAINEAC/WHMT:BRAINEAC/aveALL:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.71479e-11 rs62064364;rs72828815:rs62064364:rs143234563 56:57 ENSG00000263715 RP11-105N13.4 17 43699274 43893909 1 processed_transcript 104909134 LINC02210-CRHR1 NA NA 842 19.39 1223 6.96163e-170 0 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v6/Breast_Mammary_Tissue NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.71479e-11 rs62064364;rs72828815:rs62064364:rs143234563 56:57 ENSG00000265547 RP11-293E1.2 17 43809069 43810343 -1 lincRNA NA NA NA NA 100 13.58 0 NA NA NA NA Yes Promoter_anchored_loops:Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.22349e-10 rs62064364;rs62064364:rs143234563 57 ENSG00000265964 RP11-293E1.1 17 43810719 43812035 -1 lincRNA NA NA NA NA 97 13.58 2998 3.31048e-09 6.57620608059933e-07 PsychENCODE_eQTLs:GTEx/v8/Testis:GTEx/v7/Testis:GTEx/v6/Testis NA Yes Promoter_anchored_loops:Left_Ventricle:Spleen:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.71479e-11 rs62064364;rs62064364:rs143234563 57 ENSG00000264589 MAPT-AS1 17 43921017 43972966 -1 antisense 100128977 MAPT-AS1 NA NA 425 23.5 3449 7.18729e-41 1.13128928530532e-37 PsychENCODE_eQTLs:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Muscle_Skeletal:GTEx/v8/Testis:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Muscle_Skeletal:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Muscle_Skeletal:GTEx/v6/Testis NA Yes Promoter_anchored_loops:EP_correlation_cell_type_oneway:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.71479e-11 rs62064364;rs62064364:rs72828815:rs143234563 56:57 ENSG00000185294 SPPL2C 17 43922256 43924438 1 protein_coding 162540 SPPL2C 2.29524703916312e-05 0.187394842 119 23.5 3388 6.65162e-25 5.44181e-19 PsychENCODE_eQTLs:BRAINEAC/CRBL:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Testis:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum NA Yes Promoter_anchored_loops:EP_correlation_organ_oneway:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.71479e-11 rs62064364;rs62064364:rs143234563 57 ENSG00000186868 MAPT 17 43971748 44105700 1 protein_coding 4137 MAPT 4.68264962282433e-05 2.01024275 789 26.8 3495 0 0 PsychENCODE_eQTLs:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/CRBL:BRAINEAC/MEDU:BRAINEAC/TCTX:BRAINEAC/THAL:BRAINEAC/WHMT:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Prostate:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cerebellum:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Artery_Aorta:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops:EP_correlation_cell_type_oneway:Adult_Cortex:Fetal_Cortex:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.71479e-11 rs62064364;rs72828815;rs62064364:rs72828815:rs143234563 56:57 ENSG00000262881 RP11-669E14.4 17 43985036 43988145 -1 antisense NA NA NA NA 116 12.17 3439 3.17186e-31 6.8092e-25 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Liver:GTEx/v7/Liver:GTEx/v6/Liver NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 5.71479e-11 rs62064364;rs62064364:rs143234563 57 ENSG00000256762 STH 17 44076616 44077060 1 protein_coding 246744 STH 0.00444466614164462 0.274193181 95 19.15 2980 1.16377e-05 0.00125138762323618 PsychENCODE_eQTLs:BRAINEAC/FCTX:BRAINEAC/TCTX:BRAINEAC/aveALL NA Yes Promoter_anchored_loops:Adult_Cortex:Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.54636e-11 rs62064364;rs62064364:rs143234563 57 ENSG00000120071 KANSL1 17 44107282 44302733 -1 protein_coding 284058 KANSL1 0.999733505943003 0.058945245 1070 26.4 3615 3.27167000000001e-310 0 PsychENCODE_eQTLs:DICE/T_CD8_naive:DICE/T_CD4_TFH:DICE/T_CD4_TH1_17:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/CRBL:BRAINEAC/HIPP:BRAINEAC/MEDU:BRAINEAC/OCTX:BRAINEAC/TCTX:BRAINEAC/THAL:BRAINEAC/WHMT:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Testis:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Pituitary:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Pancreas NA Yes Promoter_anchored_loops:GM12878:Mesenchymal_Stem_Cell 5.71479e-11 rs62064364;rs143234563;rs62064364:rs143234563 57 ENSG00000262372 RP11-669E14.6 17 44112679 44113136 1 antisense NA NA NA NA 85 21 3397 9.34207e-10 1.2357e-05 scRNA_eQTLs/T_CD4:scRNA_eQTLs/PBMC:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Colon_Sigmoid:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Lung:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes EP_correlation_cell_type_oneway:EP_correlation_organ_oneway:Adult_Cortex:Aorta:Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:Pancreas:Psoas:Right_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.71479e-11 rs62064364;rs62064364:rs143234563 57 ENSG00000252698 RNU7-101P 17 44204762 44204817 1 snRNA NA RNU7-101P NA NA 104 13.82 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 1.22349e-10 rs62064364;rs62064364:rs143234563 57 ENSG00000214401 KANSL1-AS1 17 44270942 44274089 1 antisense 644246 KANSL1-AS1 NA NA 138 22.6 3642 0 0 PsychENCODE_eQTLs:scRNA_eQTLs/Monocyte:scRNA_eQTLs/T_CD4:scRNA_eQTLs/PBMC:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid:GTEx/v6/Uterus:GTEx/v6/Vagina NA Yes Promoter_anchored_loops:EP_correlation_cell_type_oneway:EP_correlation_organ_oneway:Adrenal:Aorta:Bladder:Dorsolateral_Prefrontal_Cortex:Left_Ventricle:Liver:Psoas:Right_Ventricle:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 5.71479e-11 rs62064364;rs143234563 57 ENSG00000238723 Y_RNA 17 44292436 44292537 -1 misc_RNA NA NA NA NA 95 15 1 8.58603908832e-05 0.049 DICE/T_CD4_TFH NA Yes Promoter_anchored_loops:GM12878:Mesenchymal_Stem_Cell 5.71479e-11 rs62064364;rs62064364:rs143234563 57 ENSG00000262500 RP11-259G18.2 17 44320972 44322410 1 pseudogene NA NA NA NA 82 14.92 3628 0 0 PsychENCODE_eQTLs:DICE/T_CD8_naive:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_memory_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid:GTEx/v6/Uterus:GTEx/v6/Vagina NA Yes EP_links_oneway:Promoter_anchored_loops:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.71479e-11 rs62064364;rs62064364:rs143234563 57 ENSG00000262539 RP11-259G18.3 17 44336917 44337972 -1 pseudogene NA NA NA NA 173 14.92 3640 0 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid:GTEx/v6/Uterus:GTEx/v6/Vagina NA Yes Promoter_anchored_loops:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.71479e-11 rs62064364;rs62064364:rs143234563 57 ENSG00000261575 RP11-259G18.1 17 44344403 44346060 1 pseudogene NA NA NA NA 246 14.83 3460 1.0151e-292 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD8_naive_activated:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Artery_Aorta:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Pancreas:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Testis NA Yes Promoter_anchored_loops:EP_correlation_cell_type_oneway:Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 5.71479e-11 rs62064364;rs62064364:rs72828815:rs143234563 56:57 ENSG00000228696 ARL17B 17 44352150 44439130 -1 protein_coding 100506084 ARL17B NA -0.428243465 288 15.22 3605 3.27167000000001e-310 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/T_CD4_TH1_17:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellum:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Muscle_Skeletal:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Whole_Blood:GTEx/v7/Muscle_Skeletal:GTEx/v7/Pituitary:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Whole_Blood:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Testis NA Yes Promoter_anchored_loops 5.71479e-11 rs62064364 57 ENSG00000176681 LRRC37A 17 44370099 44415160 1 protein_coding 9884 LRRC37A 0.890487355591061 NA 66 15.22 3458 3.27167000000001e-310 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/HIPP:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid:GTEx/v6/Uterus:GTEx/v6/Vagina NA Yes EP_links_oneway:Promoter_anchored_loops:GM12878:Mesenchymal_Stem_Cell:Mesendoderm 5.71479e-11 rs62064364;rs62064364:rs143234563 57 ENSG00000265411 RN7SL656P 17 44397045 44397325 1 misc_RNA 106481760 RN7SL656P NA NA 2 7.109 584 9.09178e-25 6.80912248405582e-22 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes GM12878:Mesenchymal_Stem_Cell:Mesendoderm 6.54636e-11 rs62064364;rs62064364:rs143234563 57 ENSG00000260075 NSFP1 17 44450221 44564507 1 pseudogene 728806 NSFP1 NA NA 27 15.82 3158 1.24134e-57 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellum:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid NA No NA 5.71479e-11 rs62064364 57 ENSG00000266497 RP11-995C19.2 17 44581312 44586705 1 pseudogene NA NA NA NA 3 1.137 47 6.10522e-06 0.00033387446 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v6/Whole_Blood NA Yes Mesenchymal_Stem_Cell 1.22349e-10 rs62064364;rs62064364:rs143234563 57 ENSG00000238083 LRRC37A2 17 44588877 44633016 1 protein_coding 474170 LRRC37A2 NA NA 6 19.03 3657 0 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_SVA_trans:CMC_NoSVA_cis:CMC_NoSVA_trans:BRAINEAC/CRBL:BRAINEAC/FCTX:BRAINEAC/HIPP:BRAINEAC/MEDU:BRAINEAC/OCTX:BRAINEAC/PUTM:BRAINEAC/SNIG:BRAINEAC/TCTX:BRAINEAC/THAL:BRAINEAC/WHMT:BRAINEAC/aveALL:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Kidney_Cortex:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v7/Vagina:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Small_Intestine_Terminal_Ileum:GTEx/v6/Spleen:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid:GTEx/v6/Uterus:GTEx/v6/Vagina NA Yes Mesenchymal_Stem_Cell 5.71479e-11 rs62064364;rs72828815;rs62064364:rs143234563 56:57 ENSG00000185829 ARL17A 17 44594068 44657088 -1 protein_coding 51326 ARL17A NA -2.38258287 5 19.03 3597 1.07351e-101 0 PsychENCODE_eQTLs:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_SVA_trans:CMC_NoSVA_cis:CMC_NoSVA_trans:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Pituitary:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Testis:GTEx/v6/Thyroid NA No NA 5.71479e-11 rs62064364 57 ENSG00000265315 RN7SL199P 17 44614900 44615180 1 misc_RNA 106480693 RN7SL199P NA NA 1 3.589 582 9.09178e-25 6.80912248405582e-22 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA NA rs62064364 57 ENSG00000232300 FAM215B 17 44636196 44640161 -1 sense_intronic 644297 FAM215B NA NA 3 2.242 3429 4.89815e-100 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_SVA_trans:CMC_NoSVA_cis:CMC_NoSVA_trans:GTEx/v8/Artery_Coronary:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid:GTEx/v6/Brain_Cerebellum:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Thyroid NA No NA 5.71479e-11 rs62064364 57 ENSG00000073969 NSF 17 44668035 44834830 1 protein_coding 4905 NSF 0.713682130183303 -0.566246769 0 0 3151 6.0973e-63 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellum:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cerebellum:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Nerve_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Testis:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Muscle_Skeletal:GTEx/v6/Cells_Transformed_fibroblasts NA No NA NA rs62064364 57 ENSG00000213326 RPS7P11 17 44798948 44799533 -1 pseudogene 644315 RPS7P11 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000108379 WNT3 17 44839872 44910520 -1 protein_coding 7473 WNT3 0.946108101336536 -0.191110949 0 0 3094 5.02423e-47 0 PsychENCODE_eQTLs:DICE/B_cell_naive:eQTLGen_cis_eQTLs:CMC_SVA_cis:CMC_SVA_trans:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cortex:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adrenal_Gland:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Coronary:GTEx/v6/Artery_Tibial:GTEx/v6/Colon_Sigmoid:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops:Adult_Cortex 5.71479e-11 rs62064364 57 ENSG00000158955 WNT9B 17 44910567 44964096 1 protein_coding 7484 WNT9B 0.0516168107144711 NA 0 0 1 2.551e-05 0.0436416 GTEx/v7/Spleen NA Yes Promoter_anchored_loops:Adult_Cortex NA rs62064364 57 ENSG00000262031 RP11-63A1.2 17 44987108 44988878 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 1.22349e-10 rs62064364:rs143234563 57 ENSG00000261886 RP11-63A1.1 17 44994136 45000400 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 1.22349e-10 rs62064364:rs143234563 57 ENSG00000210709 RNU6ATAC3P 17 44998490 44998615 1 snRNA 100151686 RNU6ATAC3P NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Trophoblast-like_Cell:hESC 1.22349e-10 rs62064364:rs143234563 57 ENSG00000108433 GOSR2 17 45000483 45105003 1 protein_coding 9570 GOSR2 0.00028919421780916 0.147390712 0 0 1294 7.28209e-05 4.97105e-30 GTEx/v8/Skin_Sun_Exposed_Lower_leg NA Yes IMR90:Mesenchymal_Stem_Cell 1.22349e-10 rs62064364;rs62064364:rs143234563 57 ENSG00000262633 RP11-156P1.2 17 45000499 45124520 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000264999 MIR5089 17 45050383 45050466 1 miRNA 100847067 MIR5089 NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000179673 RPRML 17 45055523 45056614 -1 protein_coding 388394 RPRML 0.421294822682809 NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000263142 LRRC37A17P 17 45055847 45131935 1 pseudogene 644397 LRRC37A17P NA NA 0 0 1566 4.23998e-20 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Brain_Cerebellum:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v7/Brain_Cerebellum:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Lung:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 6.54636e-11 rs62064364;rs62064364:rs143234563 57 ENSG00000262879 RP11-156P1.3 17 45061411 45177689 -1 processed_transcript NA NA NA NA 0 0 571 2.7603e-13 0 eQTLGen_cis_eQTLs NA No NA NA rs62064364 57 ENSG00000263650 RN7SL270P 17 45119191 45119483 1 misc_RNA 106480995 RN7SL270P NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000004897 CDC27 17 45195069 45266788 -1 protein_coding 996 CDC27 0.486673202422918 -0.787143256 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000239291 RP5-867C24.1 17 45236557 45237359 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000262265 RP5-867C24.4 17 45238441 45239430 -1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000261872 RP5-867C24.5 17 45247192 45248415 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000198336 MYL4 17 45277812 45301045 1 protein_coding 4635 MYL4 0.000175624794353708 -0.333740158 0 0 0 NA NA NA NA Yes Fetal_Cortex:Left_Ventricle:Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000259207 ITGB3 17 45331212 45421658 1 protein_coding 3690 ITGB3 0.141699544644917 -0.21470934 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000259753 ITGB3 17 45331263 45421658 1 protein_coding 3690 ITGB3 NA -0.21470934 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000238419 RNU7-186P 17 45336724 45336786 -1 snRNA 106480363 RNU7-186P NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000253347 CTD-2026D20.2 17 45486688 45500892 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000228782 MRPL45P2 17 45527934 45569858 -1 pseudogene 653479 MRPL45P2 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs62064364 57 ENSG00000263766 RP11-580I16.2 17 45681226 45726786 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 1.22349e-10 rs62064364:rs143234563 57 ENSG00000108424 KPNB1 17 45726842 45762871 1 protein_coding 3837 KPNB1 0.999994327501246 -0.517927071 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 1.22349e-10 rs62064364:rs143234563 57 ENSG00000264558 RP11-138C9.1 17 45759783 45760049 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 1.22349e-10 rs62064364:rs143234563 57 ENSG00000189120 SP6 17 45922279 45933240 -1 protein_coding 80320 SP6 0.0229475656346052 -1.129577219 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm 1.22349e-10 rs62064364:rs143234563 57 ENSG00000264243 RP11-6N17.1 17 45940708 45942556 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm 1.22349e-10 rs62064364:rs143234563 57 ENSG00000266821 RP11-6N17.2 17 45956838 45959764 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm 1.22349e-10 rs62064364:rs143234563 57 ENSG00000263787 RP11-456D7.1 17 46263300 46281891 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000207306 RNU6-1152P 17 46274042 46274148 -1 snRNA 106480073 RNU6-1152P NA NA 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell 1.22349e-10 rs62064364:rs143234563 57 ENSG00000266222 RP11-433M22.1 17 46454624 46457732 -1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs62064364 57 ENSG00000200538 U3 17 46459734 46459948 -1 snoRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs62064364 57 ENSG00000120094 HOXB1 17 46605888 46608359 -1 protein_coding 3211 HOXB1 0.115199709546097 -0.795581734 0 0 0 NA NA NA NA Yes Mesendoderm 1.22349e-10 rs62064364:rs143234563 57 ENSG00000173917 HOXB2 17 46618256 46623441 -1 protein_coding 3212 HOXB2 0.00183830846418713 0.974079452 0 0 1 1.26505091593774e-183 0 BloodeQTL NA Yes Mesendoderm 1.22349e-10 rs62064364;rs62064364:rs143234563 57 ENSG00000230148 HOXB-AS1 17 46620913 46628610 1 antisense 100874362 HOXB-AS1 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm 1.22349e-10 rs62064364:rs143234563 57 ENSG00000233101 HOXB-AS3 17 46626992 46683776 1 antisense 404266 HOXB-AS3 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm 1.22349e-10 rs62064364:rs143234563 57 ENSG00000239552 HOXB-AS2 17 46634624 46637695 1 antisense 100874350 HOXB-AS2 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm 1.22349e-10 rs62064364:rs143234563 57 ENSG00000260027 HOXB7 17 46684594 46710934 -1 protein_coding 3217 HOXB7 0.00759639061323712 -0.376189201 0 0 1 2.98862535495194e-06 0.00110609809343618 BloodeQTL NA No NA NA rs62064364 57 ENSG00000108846 ABCC3 17 48712138 48769613 1 protein_coding 8714 ABCC3 2.61612974200613e-14 -0.373435579 0 0 1 2.8409e-06 0.0207034764826176 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000011143 MKS1 17 56282803 56296966 -1 protein_coding 54903 MKS1 3.9743813098665e-09 0.090686116 0 0 3 5.8761e-06 0.037739093058242 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000256525 POLG2 17 62473902 62493154 -1 protein_coding 11232 POLG2 2.159642523574e-06 0.630506058 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell NA rs143442432 58 ENSG00000256826 AC138744.2 17 62487640 62487906 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell NA rs143442432 58 ENSG00000108654 DDX5 17 62495734 62504317 -1 protein_coding 1655 DDX5 0.99745409892001 NA 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell NA rs143442432 58 ENSG00000265695 MIR3064 17 62496891 62496957 -1 miRNA 100616387 MIR3064 NA NA 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell NA rs143442432 58 ENSG00000266241 MIR5047 17 62497332 62497431 -1 miRNA 100616408 MIR5047 NA NA 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell NA rs143442432 58 ENSG00000258890 CEP95 17 62502706 62538579 1 protein_coding 90799 CEP95 9.43885980506812e-12 0.167673535 0 0 0 NA NA NA NA Yes Trophoblast-like_Cell NA rs143442432 58 ENSG00000266566 AC009994.2 17 62526893 62526975 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:hESC NA rs143442432 58 ENSG00000271779 RP11-87N3.6 17 62568947 62569199 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs143442432 58 ENSG00000270714 MINOS1P2 17 62743382 62743610 -1 pseudogene 100289489 MINOS1P2 NA NA 0 0 0 NA NA NA NA Yes Liver:Mesendoderm NA rs143442432 58 ENSG00000266820 RP13-104F24.1 17 62746036 62754721 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Liver:Mesendoderm NA rs143442432 58 ENSG00000265298 RP13-104F24.3 17 62746538 62747429 1 pseudogene 101929240 LOC101929240 NA NA 0 0 0 NA NA NA NA Yes Liver:Mesendoderm NA rs143442432 58 ENSG00000263647 RP11-927P21.5 17 62758030 62758828 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Liver:Mesendoderm NA rs143442432 58 ENSG00000176809 LRRC37A3 17 62850430 62915598 -1 protein_coding 374819 LRRC37A3 NA -0.097137851 0 0 3391 0 0 xQTLServer_eQTLs:CMC_SVA_trans:CMC_NoSVA_cis:CMC_NoSVA_trans:BRAINEAC/CRBL:BRAINEAC/FCTX:BRAINEAC/HIPP:BRAINEAC/MEDU:BRAINEAC/OCTX:BRAINEAC/PUTM:BRAINEAC/SNIG:BRAINEAC/TCTX:BRAINEAC/THAL:BRAINEAC/WHMT:BRAINEAC/aveALL NA No NA 5.71479e-11 rs62064364;rs72828815 56:57 ENSG00000265218 RP11-927P21.1 17 62888847 62906298 1 antisense NA NA NA NA 0 0 3330 NA 0.009 CMC_SVA_trans:CMC_NoSVA_cis:CMC_NoSVA_trans NA No NA 5.71479e-11 rs62064364 57 ENSG00000264057 RP11-583F2.1 17 62923752 62930321 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.16643e-09 rs143442432:rs34000805 58:59 ENSG00000266155 RP11-927P21.6 17 62932603 62936347 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.16643e-09 rs143442432:rs34000805 58:59 ENSG00000272346 RP11-927P21.11 17 62936700 62937105 1 processed_transcript NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.16643e-09 rs143442432:rs34000805 58:59 ENSG00000232457 SLC16A6P1 17 62936720 62952664 1 pseudogene 440459 SLC16A6P1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.16643e-09 rs143442432:rs34000805 58:59 ENSG00000265912 RP11-583F2.2 17 62939380 62947172 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.16643e-09 rs143442432:rs34000805 58:59 ENSG00000272006 RP11-583F2.6 17 62947616 62947727 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.16643e-09 rs143442432:rs34000805 58:59 ENSG00000214174 AMZ2P1 17 62962668 62971694 -1 pseudogene 201283 AMZ2P1 NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs34000805:rs143442432 58:59 ENSG00000120063 GNA13 17 63006833 63052957 -1 protein_coding 10672 GNA13 0.533516375005495 -1.406714514 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.51232e-10 rs143442432 58 ENSG00000266598 RP11-583F2.5 17 63048027 63049426 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.51232e-10 rs143442432 58 ENSG00000263470 RP11-160O5.1 17 63096930 63107176 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs143442432 58 ENSG00000108370 RGS9 17 63133549 63223821 1 protein_coding 8787 RGS9 2.03911077308728e-10 0.774805264 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs143442432 58 ENSG00000265883 RP11-169I9.2 17 63181437 63181600 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.51232e-10 rs143442432 58 ENSG00000265189 AC006080.1 17 63416701 63416778 -1 miRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.51232e-10 rs143442432 58 ENSG00000263520 CTD-2535L24.3 17 63453659 63454526 1 lincRNA 105827617 LINC02563 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 4.51232e-10 rs143442432 58 ENSG00000168646 AXIN2 17 63524681 63557765 -1 protein_coding 8313 AXIN2 0.119052193328808 -0.429548838 0 0 52 1.3158e-08 7.05128205128205e-05 eQTLGen_cis_eQTLs NA Yes Fetal_Cortex:Aorta:Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.51232e-10 rs143442432 58 ENSG00000266076 CTD-2535L24.2 17 63534220 63637151 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 4.51232e-10 rs143442432 58 ENSG00000154240 CEP112 17 63631656 64188202 -1 protein_coding 201134 CEP112 3.05841247613028e-18 -0.539703304 51 18.44 8 2.27971061262e-05 2.16936e-09 DICE/T_CD4_naive_activated:DICE/T_CD4_TH1_17:GTEx/v8/Adipose_Subcutaneous NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 4.51232e-10 rs143442432 58 ENSG00000271587 GS1-531I17.3 17 63640426 63640735 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 4.51232e-10 rs143442432 58 ENSG00000270870 GS1-531I17.2 17 63651032 63651513 1 pseudogene NA NA NA NA 0 0 1 0.000304366 0.0218706177508203 PsychENCODE_eQTLs NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 4.51232e-10 rs143442432 58 ENSG00000266707 PSMD7P1 17 64193811 64194356 1 pseudogene 280637 PSMD7P1 NA NA 5 5.857 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 4.51232e-10 rs143442432 58 ENSG00000091583 APOH 17 64208151 64252643 -1 protein_coding 350 APOH 1.28717988796445e-10 0.45395392 18 10.21 0 NA NA NA NA No NA NA rs143442432 58 ENSG00000154229 PRKCA 17 64298754 64806861 1 protein_coding 5578 PRKCA 0.952135908118796 0.587034924 0 0 64 2.6176e-40 0 eQTLGen_cis_eQTLs NA Yes Fetal_Cortex NA rs143442432 58 ENSG00000244044 RN7SL735P 17 64360147 64360436 1 misc_RNA 106480529 RN7SL735P NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 4.51232e-10 rs143442432 58 ENSG00000264630 RP11-4F22.2 17 64394187 64412972 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs143442432 58 ENSG00000252685 RNU6-928P 17 64634389 64634492 1 snRNA 106479977 RNU6-928P NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 4.51232e-10 rs143442432 58 ENSG00000251698 RNA5SP445 17 64635387 64635501 1 rRNA 100873691 RNA5SP445 NA NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 4.51232e-10 rs143442432 58 ENSG00000229330 AC006947.1 17 64672490 64673522 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 4.51232e-10 rs143442432 58 ENSG00000207943 MIR634 17 64783190 64783286 1 miRNA 693219 MIR634 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 4.51232e-10 rs143442432 58 ENSG00000075429 CACNG5 17 64831235 64881603 1 protein_coding 27091 CACNG5 0.0535604442272795 NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs143442432 58 ENSG00000251764 RNA5SP446 17 64891608 64891689 1 rRNA 100873692 RNA5SP446 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 4.51232e-10 rs143442432 58 ENSG00000075461 CACNG4 17 64961026 65029514 1 protein_coding 27092 CACNG4 0.21577447263925 -0.841852039 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs143442432 58 ENSG00000264491 RP11-349A8.3 17 65016050 65017859 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs143442432 58 ENSG00000214167 AC005544.1 17 65027509 65028198 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs143442432 58 ENSG00000265664 RP11-74H8.1 17 65028525 65029406 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs143442432 58 ENSG00000108878 CACNG1 17 65040706 65052909 1 protein_coding 786 CACNG1 4.77504657244384e-07 0.123871326 0 0 16 1.73147795226721e-05 0.028767782208594 BRAINEAC/THAL NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 4.51232e-10 rs143442432;rs143442432:rs34000805 58:59 ENSG00000264421 RP11-401F2.4 17 65220419 65221657 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 9.16643e-09 rs34000805:rs143442432 58:59 ENSG00000213180 RPL36AP48 17 65220844 65221157 1 pseudogene 646175 RPL36AP48 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 9.16643e-09 rs34000805:rs143442432 58:59 ENSG00000197170 PSMD12 17 65334032 65362743 -1 protein_coding 5718 PSMD12 0.997267742152841 -1.240020922 0 0 6 NA 0.049 CMC_SVA_cis:CMC_NoSVA_cis NA No NA NA rs34000805 59 ENSG00000244610 RN7SL756P 17 65453141 65453406 -1 misc_RNA 106481128 RN7SL756P NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Mesenchymal_Stem_Cell NA rs143442432:rs34000805 58:59 ENSG00000207688 MIR548AA2 17 65467605 65467701 1 miRNA 100500895 MIR548AA2 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:Mesenchymal_Stem_Cell NA rs143442432:rs34000805 58:59 ENSG00000264754 CTD-2653B5.1 17 65520597 65521538 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs143442432 58 ENSG00000200394 SNORA38B 17 65736785 65736915 1 snoRNA 100124536 SNORA38B NA NA 0 0 0 NA NA NA NA Yes Liver:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs34000805 59 ENSG00000266858 RP11-557B23.3 17 65770707 65773440 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs34000805 59 ENSG00000213179 RPL17P41 17 65780869 65781409 1 pseudogene 100132645 RPL17P41 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs34000805 59 ENSG00000171634 BPTF 17 65821640 65980494 1 protein_coding 2186 BPTF 0.999999999995241 0.115492417 196 15.96 176 7.0713e-15 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:xQTLServer_eQTLs:CMC_SVA_cis:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Artery_Aorta:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Brain_Cerebellum:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Nerve_Tibial:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Nerve_Tibial:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA No NA 9.16643e-09 rs34000805 59 ENSG00000265086 AC006534.2 17 65840061 65840130 1 miRNA NA NA NA NA 53 15.96 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.16643e-09 rs34000805 59 ENSG00000266717 RP11-855A2.3 17 65947001 65947862 -1 antisense NA NA NA NA 14 10.52 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.16643e-09 rs34000805 59 ENSG00000265052 RN7SL622P 17 65973814 65974084 1 misc_RNA 106481092 RN7SL622P NA NA 10 14.14 0 NA NA NA NA Yes Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs34000805 59 ENSG00000186665 C17orf58 17 65987217 65989765 -1 protein_coding 284018 C17orf58 0.0821564161266073 0.225875314 6 14.14 3117 2.42789e-23 1.68126251897794e-20 PsychENCODE_eQTLs:CMC_SVA_cis:BRAINEAC/CRBL:BRAINEAC/MEDU:BRAINEAC/OCTX:BRAINEAC/TCTX:GTEx/v6/Brain_Cortex NA Yes Adult_Cortex:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs34000805;rs62064364 57:59 ENSG00000266176 RP11-855A2.5 17 65989996 65992547 -1 lincRNA NA NA NA NA 6 14.14 0 NA NA NA NA Yes Adult_Cortex:Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs34000805 59 ENSG00000182481 KPNA2 17 66031635 66042958 1 protein_coding 3838 KPNA2 0.728640006952611 -0.336633051 0 0 171 2.1332e-19 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cortex:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Esophagus_Muscularis:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cortex NA Yes Adult_Cortex:Fetal_Cortex:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC NA rs34000805 59 ENSG00000266117 LOC732538 17 66091209 66091898 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000265055 AC145343.2 17 66092187 66097615 -1 lincRNA NA NA NA NA 0 0 177 1.08252e-30 1.44904e-34 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Tibial:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Nerve_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Testis:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000237854 LINC00674 17 66098049 66111659 1 pseudogene 100499466 LINC00674 NA NA 0 0 190 8.1669e-38 0 DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_non_classical:DICE/T_CD4_TFH:DICE/T_CD4_TH17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000267023 LRRC37A16P 17 66121918 66148609 -1 pseudogene 651250 LRRC37A16P NA NA 0 0 190 1.7812e-43 0 PsychENCODE_eQTLs:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH1_17:DICE/T_CD4_TH2:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Colon_Sigmoid:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Nerve_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs34000805 59 ENSG00000267352 SH3GL1P3 17 66130816 66131745 -1 pseudogene 727736 SH3GL1P3 NA NA 0 0 190 8.4105e-65 0 DICE/T_CD8_naive:DICE/Monocyte_classical:DICE/Monocyte_non_classical:DICE/T_CD4_TFH:DICE/T_CD4_TH17:DICE/T_CD4_memory_TREG:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Colon_Sigmoid:GTEx/v7/Ovary:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Cells_Transformed_fibroblasts NA Yes Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs34000805 59 ENSG00000267708 RP11-147L13.7 17 66148917 66155184 -1 pseudogene NA NA NA NA 0 0 12 1.50666e-05 0.00012823 eQTLGen_cis_eQTLs:GTEx/v8/Testis NA Yes Left_Ventricle:Liver:Right_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs34000805 59 ENSG00000267731 RP11-147L13.8 17 66186025 66188943 1 lincRNA NA NA NA NA 0 0 173 1.16614e-09 3.62406e-31 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:CMC_SVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Nerve_Tibial:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Artery_Tibial:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Artery_Tibial NA Yes Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000267472 LOC440461 17 66195062 66195737 1 pseudogene NA NA NA NA 0 0 155 1.47817e-06 1.60853e-57 PsychENCODE_eQTLs:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Brain_Cerebellar_Hemisphere NA Yes Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000265100 RP11-147L13.2 17 66242770 66244079 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs34000805 59 ENSG00000196704 AMZ2 17 66243715 66253297 1 protein_coding 51321 AMZ2 1.54653236502662e-08 NA 0 0 0 NA NA NA NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs34000805 59 ENSG00000141337 ARSG 17 66255323 66418872 1 protein_coding 22901 ARSG 1.55401104160652e-05 -0.073146217 0 0 9 8.5622e-09 5.79560821688454e-05 eQTLGen_cis_eQTLs NA Yes Left_Ventricle:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm NA rs34000805 59 ENSG00000108932 SLC16A6 17 66263167 66287408 -1 protein_coding 9120 SLC16A6 0.205129420734742 0.544953981 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000070540 WIPI1 17 66417089 66453654 -1 protein_coding 55062 WIPI1 0.523500460994852 NA 0 0 0 NA NA NA NA Yes Aorta:Left_Ventricle:Liver:Spleen:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Neural_Progenitor_Cell:Trophoblast-like_Cell:hESC 9.16643e-09 rs34000805:rs143442432 58:59 ENSG00000207561 MIR635 17 66420592 66420689 -1 miRNA 693220 MIR635 NA NA 0 0 1 3.50832587884e-05 0.049 DICE/T_CD4_TFH NA No NA NA rs34000805 59 ENSG00000108946 PRKAR1A 17 66507921 66547460 1 protein_coding 5573 PRKAR1A 0.999223269468243 -0.526046164 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 9.16643e-09 rs34000805 59 ENSG00000108950 FAM20A 17 66531254 66597530 -1 protein_coding 54757 FAM20A 0.00250112243343209 NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 9.16643e-09 rs34000805 59 ENSG00000269657 AC079210.1 17 66539369 66542970 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs34000805 59 ENSG00000267461 RP11-120M18.5 17 66553657 66578718 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC NA rs34000805 59 ENSG00000267659 RP11-118B18.1 17 66587937 66760023 1 lincRNA 101928104 LINC01482 NA NA 0 0 1 5.10414910006e-05 0.049 DICE/T_CD4_TH1 NA Yes Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell 9.16643e-09 rs34000805 59 ENSG00000263690 AC011591.1 17 66762614 66762700 -1 miRNA 693131 MIR548D2 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs143442432:rs34000805 58:59 ENSG00000267250 RP11-118B18.2 17 66789690 66793963 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs143442432:rs34000805 58:59 ENSG00000141338 ABCA8 17 66863433 66951533 -1 protein_coding 10351 ABCA8 1.71937025604407e-33 -0.722805264 0 0 0 NA NA NA NA Yes Left_Ventricle:Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000154258 ABCA9 17 66970629 67057205 -1 protein_coding 10350 ABCA9 1.27777342298461e-26 0.808506325 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000231749 ABCA9-AS1 17 67000855 67014464 1 antisense 104355297 ABCA9-AS1 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000154262 ABCA6 17 67074843 67138029 -1 protein_coding 23460 ABCA6 1.83135791674863e-16 0.04887392 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000267361 LOC100421166 17 67090430 67091640 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 9.16643e-09 rs34000805 59 ENSG00000265331 MIR4524B 17 67095683 67095797 1 miRNA 100847008 MIR4524B NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 9.16643e-09 rs34000805 59 ENSG00000154263 ABCA10 17 67143355 67240987 -1 protein_coding 10349 ABCA10 1.20688643660446e-27 1.186945085 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000267203 SNRPGP4 17 67314874 67315102 1 pseudogene 100130368 SNRPGP4 NA NA 0 0 0 NA NA NA NA Yes Aorta:Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000230258 AC002539.1 17 68013465 68125000 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs34000805 59 ENSG00000108679 LGALS3BP 17 76967320 76976191 -1 protein_coding 3959 LGALS3BP 3.92643319809695e-07 -0.068876466 0 0 18 6.3575e-12 0 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000173482 PTPRM 18 7566780 8406859 1 protein_coding 5797 PTPRM 0.999958213992023 NA 0 0 7 4.9997e-06 0.0329285449833395 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000101782 RIOK3 18 21032787 21066567 1 protein_coding 8780 RIOK3 0.000146775088539085 -0.732723669 0 0 1 2.3515e-06 0.0175355450236967 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000066926 FECH 18 55215515 55254004 -1 protein_coding 2235 FECH 0.138946552569902 0.374467336 0 0 3 2.2996e-08 0.000302343159486017 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000176225 RTTN 18 67671029 67873181 -1 protein_coding 25914 RTTN 2.40394270810394e-13 -0.337359156 0 0 11 1.3315e-06 0.0105141054194506 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000099860 GADD45B 19 2476120 2478257 1 protein_coding 4616 GADD45B 0.185427441870799 -0.920557853 0 0 5 4.5355e-06 0.0303071364046974 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000203403 AC020907.2 19 35628549 35630484 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs9917056 60 ENSG00000266964 FXYD1 19 35629712 35634013 1 protein_coding 5348 FXYD1 0.233039911970241 NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs9917056 60 ENSG00000221857 CTD-2527I21.4 19 35629728 35642239 1 processed_transcript NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs9917056 60 ENSG00000177558 FAM187B 19 35715703 35719632 -1 protein_coding 148109 FAM187B 3.6655613907075e-06 0.469238193 0 0 0 NA NA NA NA Yes GM12878 6.66346e-10 rs9917056 60 ENSG00000105698 USF2 19 35759881 35770724 1 protein_coding 7392 USF2 0.992520444067371 NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Liver:Mesenchymal_Stem_Cell:Mesendoderm 6.66346e-10 rs9917056 60 ENSG00000105697 HAMP 19 35771619 35776046 1 protein_coding 57817 HAMP 0.0425051340417533 0.204408851 0 0 0 NA NA NA NA Yes Liver:Mesenchymal_Stem_Cell:Mesendoderm 6.66346e-10 rs9917056 60 ENSG00000105695 MAG 19 35783028 35804707 1 protein_coding 4099 MAG 0.540766816780039 -0.17299365 0 0 0 NA NA NA NA Yes Liver:Mesenchymal_Stem_Cell:Mesendoderm 6.66346e-10 rs9917056 60 ENSG00000269553 U62631.5 19 35821746 35822823 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex NA rs9917056 60 ENSG00000232680 AC002511.3 19 35923859 35925544 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Mesendoderm 6.66346e-10 rs9917056 60 ENSG00000126262 FFAR2 19 35934809 35942669 1 protein_coding 2867 FFAR2 0.000643946787473112 -0.026059256 0 0 0 NA NA NA NA Yes Mesendoderm 6.66346e-10 rs9917056 60 ENSG00000161249 DMKN 19 35988122 36004560 -1 protein_coding 93099 DMKN 3.47258381606507e-09 0.360482084 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000189001 SBSN 19 36014269 36019253 -1 protein_coding 374897 SBSN 0.03514528123125 -0.047393413 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000105679 GAPDHS 19 36024314 36036218 1 protein_coding 26330 GAPDHS 0.135772125697306 -0.33913124 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000236144 AD000090.2 19 36031640 36036931 -1 antisense 100506469 TMEM147-AS1 NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000105677 TMEM147 19 36036497 36038428 1 protein_coding 10430 TMEM147 0.137954529384416 -0.311436295 0 0 18 6.4953e-08 0.000277672598763095 eQTLGen_cis_eQTLs NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000105675 ATP4A 19 36040945 36054560 -1 protein_coding 495 ATP4A 6.98616960990842e-08 -0.257183017 0 0 0 NA NA NA NA Yes Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000224910 AC002115.5 19 36088809 36092403 1 lincRNA 102723617 LINC01766 NA NA 0 0 26 3.83635e-07 4.85572e-07 GTEx/v8/Testis NA No NA 6.66346e-10 rs9917056 60 ENSG00000267626 AC002115.9 19 36099187 36103568 -1 lincRNA NA NA NA NA 0 0 20 2.54231e-10 1.36254e-10 GTEx/v8/Testis:GTEx/v7/Testis:GTEx/v6/Testis NA No NA 6.66346e-10 rs9917056 60 ENSG00000249115 HAUS5 19 36103646 36116251 1 protein_coding 23354 HAUS5 0.000826136639407559 -0.025464759 0 0 29 6.59088e-06 0.00868198 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v7/Adipose_Subcutaneous NA No NA 6.66346e-10 rs9917056 60 ENSG00000126254 RBM42 19 36119932 36128588 1 protein_coding 79171 RBM42 0.759889530892988 0.109123877 0 0 6 6.3946e-08 0.000277690123067214 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes Adult_Cortex:Fetal_Cortex NA rs9917056 60 ENSG00000105672 ETV2 19 36132647 36135773 1 protein_coding 2116 ETV2 0.0328967978548939 -0.436839257 1 1.146 34 3.35358e-30 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Pancreas:GTEx/v6/Lung:GTEx/v6/Pancreas NA Yes Fetal_Cortex 6.66346e-10 rs9917056 60 ENSG00000126267 COX6B1 19 36139125 36149763 1 protein_coding 1340 COX6B1 0.0816220932965698 -0.124788208 4 7.296 53 3.27170000000001e-310 0 PsychENCODE_eQTLs:DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/Monocyte_classical:DICE/T_CD4_TFH:DICE/T_CD4_TH17:DICE/T_CD4_TH2:eQTLGen_cis_eQTLs:eQTLGen_trans_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Vagina:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes Fetal_Cortex 6.66346e-10 rs9917056;rs62064364 57:60 ENSG00000266455 RN7SL765P 19 36155398 36155724 1 misc_RNA NA RN7SL765P NA NA 4 7.296 34 1.37822e-62 0 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v7/Muscle_Skeletal:GTEx/v6/Muscle_Skeletal NA No NA 6.66346e-10 rs9917056 60 ENSG00000105668 UPK1A 19 36157715 36169367 1 protein_coding 11045 UPK1A 3.36196571713144e-05 -0.102742169 10 10.12 34 1.75943e-55 0 PsychENCODE_eQTLs:DICE/T_CD4_naive:DICE/T_CD4_naive_activated:DICE/T_CD8_naive:DICE/T_CD8_naive_activated:DICE/T_CD4_TFH:BIOSQTL/BIOS_eQTL_geneLevel:BRAINEAC/CRBL:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pituitary:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pituitary:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Spleen:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Pituitary:GTEx/v6/Spleen:GTEx/v6/Testis:GTEx/v6/Thyroid NA No NA 6.66346e-10 rs9917056 60 ENSG00000226510 UPK1A-AS1 19 36158850 36164193 -1 antisense 100862728 UPK1A-AS1 NA NA 10 10.12 34 2.54071e-19 0 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Esophagus_Gastroesophageal_Junction NA Yes Spleen:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.66346e-10 rs9917056 60 ENSG00000267190 AC002314.4 19 36174680 36175103 -1 pseudogene NA NA NA NA 9 10.12 0 NA NA NA NA Yes Spleen:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.66346e-10 rs9917056 60 ENSG00000011590 ZBTB32 19 36195429 36207940 1 protein_coding 27033 ZBTB32 0.0162101668651277 -0.473087438 6 9.696 35 1.36438e-56 0 PsychENCODE_eQTLs:DICE/B_cell_naive:DICE/T_CD4_naive:DICE/T_CD8_naive:DICE/NK:DICE/T_CD4_TFH:DICE/T_CD4_TH1:DICE/T_CD4_TH17:DICE/T_CD4_TH2:DICE/T_CD4_naive_TREG:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Minor_Salivary_Gland:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid:GTEx/v7/Uterus:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cortex:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Thyroid NA Yes Spleen:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.66346e-10 rs9917056 60 ENSG00000105663 KMT2B 19 36208921 36229779 1 processed_transcript 9757 KMT2B NA NA 7 11.92 32 2.9104e-22 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v6/Nerve_Tibial:GTEx/v6/Thyroid NA Yes Adult_Cortex:Fetal_Cortex:Spleen:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.66346e-10 rs9917056 60 ENSG00000272333 KMT2B 19 36208921 36229779 1 protein_coding 9757 KMT2B 0.999999997452585 NA 7 11.92 33 1.11061e-16 1.45074e-12 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Whole_Blood:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v6/Nerve_Tibial:GTEx/v6/Thyroid NA Yes Adult_Cortex:Fetal_Cortex:Spleen:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.66346e-10 rs9917056 60 ENSG00000126246 IGFLR1 19 36230058 36233354 -1 protein_coding 79713 IGFLR1 0.00016488397901589 0.228180628 5 11.92 34 7.5632e-135 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Liver:GTEx/v8/Muscle_Skeletal:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Tibial:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg NA Yes Spleen:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.66346e-10 rs9917056 60 ENSG00000267120 AD000671.6 19 36230153 36236333 -1 protein_coding NA NA NA NA 5 11.92 28 4.10615e-61 0 PsychENCODE_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA Yes Spleen:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.66346e-10 rs9917056 60 ENSG00000161265 U2AF1L4 19 36233365 36236346 -1 protein_coding 199746 U2AF1L4 5.80258583719614e-07 -0.208568247 5 11.92 34 4.7358e-90 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Spleen:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Nerve_Tibial:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes Spleen:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.66346e-10 rs9917056 60 ENSG00000205155 PSENEN 19 36236015 36237911 1 protein_coding 55851 PSENEN 0.535694860133088 -0.448212346 4 6.407 28 7.44519e-13 0 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Spleen:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.66346e-10 rs9917056 60 ENSG00000188223 AC002398.9 19 36236579 36245420 1 protein_coding NA NA NA NA 8 8.948 28 1.62926e-20 0 BIOSQTL/BIOS_eQTL_geneLevel NA Yes Spleen:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.66346e-10 rs9917056 60 ENSG00000267439 AC002398.11 19 36237958 36244316 -1 antisense NA NA NA NA 8 8.948 28 1.62926e-20 0 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v6/Esophagus_Mucosa NA Yes Adult_Cortex:Fetal_Cortex 6.66346e-10 rs9917056 60 ENSG00000267796 LIN37 19 36239262 36245420 1 protein_coding 55957 LIN37 0.356935099324916 -0.185163979 7 8.948 34 2.1012e-32 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Transverse:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg NA Yes Spleen:GM12878:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.66346e-10 rs9917056 60 ENSG00000267328 AC002398.12 19 36245467 36246391 1 antisense NA NA NA NA 6 8.948 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 6.66346e-10 rs9917056 60 ENSG00000004776 HSPB6 19 36245469 36248980 -1 protein_coding 126393 HSPB6 0.391248531059943 -0.809830146 7 8.948 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 6.66346e-10 rs9917056 60 ENSG00000167595 C19orf55 19 36249044 36261930 1 protein_coding 148137 C19orf55 5.1009443214932e-06 NA 10 8.948 34 2.46582e-27 0 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Spleen:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Artery_Tibial:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Stomach:GTEx/v6/Thyroid NA Yes Adult_Cortex:Fetal_Cortex 6.66346e-10 rs9917056 60 ENSG00000267049 AC002398.13 19 36260046 36261930 -1 antisense NA NA NA NA 7 8.612 34 7.83552e-16 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adrenal_Gland:GTEx/v8/Artery_Tibial:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Thyroid:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Adipose_Visceral_Omentum:GTEx/v6/Adrenal_Gland:GTEx/v6/Whole_Blood:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Cerebellum:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid NA No NA 6.66346e-10 rs9917056 60 ENSG00000004777 ARHGAP33 19 36265434 36279724 1 protein_coding 115703 ARHGAP33 0.212248410336133 NA 6 5.284 34 3.27170000000001e-310 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Whole_Blood:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Thyroid NA No NA 6.66346e-10 rs9917056 60 ENSG00000225872 AC002398.5 19 36279778 36288787 -1 lincRNA 644050 LINC01529 NA NA 2 4.126 29 7.8992e-51 4.03098e-43 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellum:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v8/Vagina:GTEx/v7/Testis NA No NA 6.66346e-10 rs9917056 60 ENSG00000250799 PRODH2 19 36290890 36304201 -1 protein_coding 58510 PRODH2 7.20821354097691e-12 0.057693795 1 4.126 0 NA NA NA NA Yes Promoter_anchored_loops NA rs9917056 60 ENSG00000161270 NPHS1 19 36316866 36360189 -1 protein_coding 4868 NPHS1 7.72410839762903e-11 0.715347903 0 0 0 NA NA NA NA Yes Adult_Cortex:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000126259 KIRREL2 19 36346763 36358011 1 protein_coding 84063 KIRREL2 8.95380796903671e-06 -0.978897209 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000105290 APLP1 19 36358801 36370693 1 protein_coding 333 APLP1 0.525926955621001 NA 0 0 0 NA NA NA NA Yes Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000167604 NFKBID 19 36378555 36393205 -1 protein_coding 84807 NFKBID 0.795064373784277 0.421861666 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 6.66346e-10 rs9917056 60 ENSG00000126264 HCST 19 36393382 36395279 1 protein_coding 10870 HCST 0.0119335980806641 0.077422591 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 6.66346e-10 rs9917056 60 ENSG00000011600 TYROBP 19 36395303 36399197 -1 protein_coding 7305 TYROBP 0.485203146508796 0.278612119 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 6.66346e-10 rs9917056 60 ENSG00000267786 AF038458.3 19 36438017 36450094 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex NA rs9917056 60 ENSG00000267113 AF038458.4 19 36448023 36448284 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell:Mesendoderm 6.66346e-10 rs9917056 60 ENSG00000267388 AF038458.5 19 36451414 36454965 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Mesenchymal_Stem_Cell:Mesendoderm 6.66346e-10 rs9917056 60 ENSG00000205138 SDHAF1 19 36486090 36487220 1 protein_coding 644096 SDHAF1 0.106593833761682 -0.481737608 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:GM12878:IMR90:Mesenchymal_Stem_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000181392 SYNE4 19 36494209 36499695 -1 protein_coding 163183 SYNE4 5.95759018587848e-11 -0.259700362 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000248101 AC002116.8 19 36499540 36505137 -1 processed_transcript NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000239382 ALKBH6 19 36500022 36505141 -1 protein_coding 84964 ALKBH6 0.468934189734711 -0.323206603 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000267698 AC002116.7 19 36505410 36536874 1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:hESC 6.66346e-10 rs9917056 60 ENSG00000126247 CAPNS1 19 36630477 36641255 1 protein_coding 826 CAPNS1 0.000124379798692998 0.007584445 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs9917056 60 ENSG00000270760 AD001527.7 19 36634983 36639250 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex NA rs9917056 60 ENSG00000267163 AC084219.3 19 44598503 44603864 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 1.56207e-08 rs429358 61 ENSG00000186019 AC084219.4 19 44609616 44617298 -1 antisense 100379224 LOC100379224 NA NA 0 0 0 NA NA NA NA Yes IMR90 1.56207e-08 rs429358 61 ENSG00000256294 ZNF225 19 44616334 44637027 1 protein_coding 7768 ZNF225 3.36669333303033e-08 0.547354183 0 0 0 NA NA NA NA Yes IMR90 1.56207e-08 rs429358 61 ENSG00000230666 CEACAM22P 19 45041045 45124119 -1 pseudogene 388550 CEACAM22P NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.56207e-08 rs429358 61 ENSG00000266903 CTB-171A8.1 19 45135500 45222031 -1 antisense NA NA NA NA 0 0 6 2.55634e-05 8.38218e-110 GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Thyroid:GTEx/v7/Thyroid NA No NA 1.56207e-08 rs429358 61 ENSG00000073008 PVR 19 45147098 45166850 1 protein_coding 5817 PVR 5.51101308161619e-07 -0.732916848 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 1.56207e-08 rs429358 61 ENSG00000187244 BCAM 19 45312328 45324673 1 protein_coding 4059 BCAM 0.0368511835228543 NA 0 0 1 3.07773e-05 0.0021447 GTEx/v8/Nerve_Tibial NA No NA NA rs429358 61 ENSG00000130202 PVRL2 19 45349432 45392485 1 protein_coding 5819 PVRL2 0.531937435077773 -0.314456223 2 5.597 8 1.6625e-28 0 eQTLGen_cis_eQTLs NA No NA NA rs429358 61 ENSG00000267282 CTB-129P6.4 19 45385284 45394133 -1 antisense NA NA NA NA 2 5.597 3 4.13792e-05 0.0477317 GTEx/v8/Esophagus_Muscularis NA Yes Adult_Cortex:Fetal_Cortex 1.56207e-08 rs429358 61 ENSG00000130204 TOMM40 19 45393826 45406946 1 protein_coding 10452 TOMM40 0.963682323765023 NA 8 12.64 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 1.56207e-08 rs429358 61 ENSG00000130203 APOE 19 45409011 45412650 1 protein_coding 348 APOE 0.0345335830833016 -0.237445173 9 12.64 7 6.33258e-11 8.12937e-21 GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg NA No NA 1.56207e-08 rs429358 61 ENSG00000130208 APOC1 19 45417504 45422606 1 protein_coding 341 APOC1 0.0507382728810443 -0.105569458 12 12.64 12 1.02339e-07 8.62139e-05 GTEx/v8/Adrenal_Gland:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Esophagus_Mucosa NA No NA 1.56207e-08 rs429358 61 ENSG00000214855 APOC1P1 19 45430061 45434643 1 pseudogene 342 APOC1P1 NA NA 4 5.514 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 1.56207e-08 rs429358 61 ENSG00000224916 APOC4-APOC2 19 45445495 45452822 1 protein_coding 100533990 APOC4-APOC2 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.56207e-08 rs429358 61 ENSG00000267467 APOC4 19 45445495 45452820 1 protein_coding 346 APOC4 0.000150692347626422 0.337274035 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.56207e-08 rs429358 61 ENSG00000234906 APOC2 19 45449243 45452822 1 protein_coding 344 APOC2 0.0227961322934307 0.388732718 0 0 0 NA NA NA NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.56207e-08 rs429358 61 ENSG00000267114 CTB-129P6.11 19 45453301 45457264 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.56207e-08 rs429358 61 ENSG00000104853 CLPTM1 19 45457842 45496599 1 protein_coding 1209 CLPTM1 0.98048307691788 NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex:Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 1.56207e-08 rs429358 61 ENSG00000104859 CLASRP 19 45542298 45574214 1 protein_coding 11129 CLASRP 0.964966482147783 -0.085202503 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 1.56207e-08 rs429358 61 ENSG00000007255 TRAPPC6A 19 45666186 45681495 -1 protein_coding 79090 TRAPPC6A 0.000705277787371492 -0.133842318 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 1.56207e-08 rs429358 61 ENSG00000189114 BLOC1S3 19 45682003 45685059 1 protein_coding 388552 BLOC1S3 0.0184297702580611 -0.115773028 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 1.56207e-08 rs429358 61 ENSG00000267545 AC005779.2 19 45683080 45705702 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 1.56207e-08 rs429358 61 ENSG00000225157 AC005779.1 19 45687584 45688190 -1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Adult_Cortex:Fetal_Cortex 1.56207e-08 rs429358 61 ENSG00000267045 AC006126.4 19 45741890 45748628 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Fetal_Cortex NA rs429358 61 ENSG00000042753 AP2S1 19 47341393 47354249 -1 protein_coding 1175 AP2S1 0.919495985397116 -0.489209896 0 0 14 7.2778e-07 0.00622784810126582 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000234832 RP3-322G13.7 20 23327578 23332123 -1 antisense NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1888995 62 ENSG00000269407 AL096677.1 20 23330015 23334066 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1888995 62 ENSG00000132661 NXT1 20 23331373 23335414 1 protein_coding 29107 NXT1 0.574740218091013 -0.448920585 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1888995 62 ENSG00000232645 RP3-322G13.5 20 23337231 23338753 -1 antisense 100505683 LINC01431 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1888995 62 ENSG00000125812 GZF1 20 23342787 23353700 1 protein_coding 64412 GZF1 0.00788572311664667 -0.425583922 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1888995 62 ENSG00000204658 RP11-218C14.2 20 23564282 23567147 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1888995 62 ENSG00000173335 CST9 20 23583047 23586513 -1 protein_coding 128822 CST9 0.0951092949311725 0.423087224 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1888995 62 ENSG00000232595 CST2P1 20 23691957 23692043 -1 pseudogene 101410546 CST2P1 NA NA 0 0 0 NA NA NA NA Yes Left_Ventricle NA rs1888995 62 ENSG00000170373 CST1 20 23728190 23731905 -1 protein_coding 1469 CST1 2.8669819797472e-08 2.026205955 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1888995 62 ENSG00000228476 CSTP1 20 23899408 23902806 -1 pseudogene 1480 CSTP1 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell 7.29458e-12 rs1888995 62 ENSG00000077984 CST7 20 24929866 24940564 1 protein_coding 8530 CST7 9.91887068524384e-07 1.365391002 0 0 305 3.6431e-32 0 eQTLGen_cis_eQTLs NA Yes Promoter_anchored_loops 6.87068e-12 rs1888995 62 ENSG00000101474 APMAP 20 24943561 24973615 -1 protein_coding 57136 APMAP 2.35566376172495e-07 0.451091931 0 0 294 2.2592e-10 0 eQTLGen_cis_eQTLs NA Yes Left_Ventricle:Liver:GM12878:IMR90:Mesenchymal_Stem_Cell:hESC 6.87068e-12 rs1888995 62 ENSG00000154930 ACSS1 20 24986868 25039616 -1 protein_coding 84532 ACSS1 0.00139669613638913 0.078821039 0 0 303 1.108e-14 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v6/Cells_Transformed_fibroblasts NA No NA 6.87068e-12 rs1888995 62 ENSG00000100987 VSX1 20 25051521 25062996 -1 protein_coding 30813 VSX1 0.00659973339577821 -0.19910074 0 0 22 0.000282753 0.0205555231357071 PsychENCODE_eQTLs:CMC_SVA_cis NA Yes IMR90 7.29458e-12 rs1888995 62 ENSG00000225069 RP5-1025A1.2 20 25079741 25080564 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:IMR90 NA rs1888995 62 ENSG00000230725 RP4-738P15.1 20 25121425 25129894 -1 lincRNA 284798 LOC284798 NA NA 0 0 130 8.35767e-07 5.01445e-09 GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Putamen_basal_ganglia NA Yes Promoter_anchored_loops 6.87068e-12 rs1888995 62 ENSG00000197586 ENTPD6 20 25176329 25207365 1 protein_coding 955 ENTPD6 4.98993289171908e-05 0.273760262 0 0 338 1.0747e-44 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v8/Stomach:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adrenal_Gland:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Pancreas:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Stomach:GTEx/v7/Thyroid:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Nerve_Tibial:GTEx/v6/Pancreas:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Thyroid NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:hESC 6.87068e-12 rs1888995 62 ENSG00000202414 Y_RNA 20 25195334 25195434 1 misc_RNA NA NA NA NA 0 0 0 NA NA NA NA Yes GM12878:IMR90:Mesenchymal_Stem_Cell:hESC 6.87068e-12 rs1888995 62 ENSG00000268302 AL035252.1 20 25207122 25207370 -1 protein_coding NA NA NA NA 0 0 3 4.29866e-11 0 BIOSQTL/BIOS_eQTL_geneLevel NA Yes IMR90 6.87068e-12 rs1888995 62 ENSG00000100994 PYGB 20 25228705 25278650 1 protein_coding 5834 PYGB 4.76485243414978e-07 -0.157076345 72 20.5 338 3.27167000000001e-310 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:BRAINEAC/CRBL:BRAINEAC/FCTX:BRAINEAC/HIPP:BRAINEAC/MEDU:BRAINEAC/OCTX:BRAINEAC/PUTM:BRAINEAC/TCTX:BRAINEAC/THAL:BRAINEAC/aveALL:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Colon_Sigmoid:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Spleen:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Cells_EBV-transformed_lymphocytes:GTEx/v7/Whole_Blood:GTEx/v7/Artery_Aorta:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Colon_Sigmoid:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Spleen:GTEx/v6/Cells_EBV-transformed_lymphocytes:GTEx/v6/Whole_Blood:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Nerve_Tibial:GTEx/v6/Skin_Sun_Exposed_Lower_leg NA Yes Adult_Cortex:Fetal_Cortex:IMR90 6.87068e-12 rs1888995 62 ENSG00000100997 ABHD12 20 25275379 25371619 -1 protein_coding 26090 ABHD12 1.98295570505197e-06 NA 180 20.5 339 0 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Liver:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Ovary:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Uterus:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Coronary:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Liver:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Ovary:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Uterus:GTEx/v6/Adipose_Subcutaneous:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Cortex:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Liver:GTEx/v6/Lung:GTEx/v6/Nerve_Tibial:GTEx/v6/Ovary:GTEx/v6/Pituitary:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Stomach:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops:EP_correlation_cell_type_oneway:Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:hESC 6.87068e-12 rs1888995 62 ENSG00000227379 PPIAP2 20 25348911 25349402 -1 pseudogene 170537 PPIAP2 NA NA 32 11.46 138 2.14262e-06 0.005220031 GTEx/v8/Brain_Cerebellum:GTEx/v6/Nerve_Tibial NA Yes Adult_Cortex:IMR90:Mesenchymal_Stem_Cell:hESC 7.29458e-12 rs1888995 62 ENSG00000101003 GINS1 20 25388363 25433264 1 protein_coding 9837 GINS1 0.0500369772330311 0.065966113 102 13.5 326 4.78841e-11 4.60466e-07 eQTLGen_cis_eQTLs:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Testis:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Cells_Transformed_fibroblasts:GTEx/v7/Testis NA Yes IMR90:Mesenchymal_Stem_Cell:hESC 6.87068e-12 rs1888995 62 ENSG00000101004 NINL 20 25433341 25566153 -1 protein_coding 22981 NINL 3.96830789193205e-33 0.307409176 91 13.5 339 4.7099e-45 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/CRBL:BRAINEAC/WHMT:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Artery_Aorta:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Thyroid:GTEx/v6/Artery_Aorta:GTEx/v6/Brain_Cerebellum:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Thyroid NA Yes Promoter_anchored_loops:Mesenchymal_Stem_Cell 6.87068e-12 rs1888995 62 ENSG00000251883 RNU6ATAC17P 20 25591789 25591859 1 snRNA 106481164 RNU6ATAC17P NA NA 3 5.207 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs1888995 62 ENSG00000170191 NANP 20 25593571 25604811 -1 protein_coding 140838 NANP 0.0265416473766969 1.509578514 3 2.593 334 2.0121e-293 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.87068e-12 rs1888995 62 ENSG00000213742 ZNF337-AS1 20 25604681 25658710 1 antisense 102724826 ZNF337-AS1 NA NA 1 2.593 312 1.09486e-09 8.37665e-16 PsychENCODE_eQTLs:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Cells_Transformed_fibroblasts NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.87068e-12 rs1888995 62 ENSG00000242236 RN7SL594P 20 25635232 25635517 -1 misc_RNA 106479439 RN7SL594P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.87068e-12 rs1888995 62 ENSG00000236542 MED28P7 20 25650493 25651022 -1 pseudogene 729327 MED28P7 NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.87068e-12 rs1888995 62 ENSG00000130684 ZNF337 20 25654851 25677477 -1 protein_coding 26152 ZNF337 2.29239140713378e-09 0.346330157 0 0 73 9.6923e-08 0.000339281226438804 eQTLGen_cis_eQTLs NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:Trophoblast-like_Cell:hESC 6.87068e-12 rs1888995 62 ENSG00000230772 VN1R108P 20 25714900 25715729 1 pseudogene 100312850 VN1R108P NA NA 0 0 318 1.25173e-05 4.87607e-06 GTEx/v8/Artery_Coronary:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Thyroid NA Yes Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.87068e-12 rs1888995 62 ENSG00000226465 RP13-401N8.1 20 25731854 25733397 1 antisense NA NA NA NA 0 0 294 5.9346e-07 4.63028e-06 GTEx/v8/Nerve_Tibial NA No NA 7.29458e-12 rs1888995 62 ENSG00000175170 FAM182B 20 25744102 25848861 -1 protein_coding 728882 FAM182B NA NA 0 0 339 4.3552e-37 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:xQTLServer_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Adrenal_Gland:GTEx/v8/Whole_Blood:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Breast_Mammary_Tissue:GTEx/v8/Colon_Sigmoid:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Heart_Atrial_Appendage:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Lung:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Pancreas:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Stomach:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Adrenal_Gland:GTEx/v7/Artery_Aorta:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Amygdala:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Spinal_cord_cervical_c-1:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Breast_Mammary_Tissue:GTEx/v7/Colon_Sigmoid:GTEx/v7/Colon_Transverse:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Mucosa:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Atrial_Appendage:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Lung:GTEx/v7/Muscle_Skeletal:GTEx/v7/Pancreas:GTEx/v7/Pituitary:GTEx/v7/Prostate:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Small_Intestine_Terminal_Ileum:GTEx/v7/Stomach:GTEx/v7/Testis:GTEx/v7/Thyroid:GTEx/v6/Adrenal_Gland:GTEx/v6/Artery_Aorta:GTEx/v6/Artery_Tibial:GTEx/v6/Brain_Anterior_cingulate_cortex_BA24:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Hypothalamus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Brain_Putamen_basal_ganglia:GTEx/v6/Breast_Mammary_Tissue:GTEx/v6/Colon_Sigmoid:GTEx/v6/Colon_Transverse:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Mucosa:GTEx/v6/Esophagus_Muscularis:GTEx/v6/Heart_Atrial_Appendage:GTEx/v6/Heart_Left_Ventricle:GTEx/v6/Lung:GTEx/v6/Muscle_Skeletal:GTEx/v6/Pancreas:GTEx/v6/Pituitary:GTEx/v6/Prostate:GTEx/v6/Cells_Transformed_fibroblasts:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Testis:GTEx/v6/Thyroid NA Yes EP_links_oneway:Promoter_anchored_loops:hESC 6.87068e-12 rs1888995 62 ENSG00000250090 RP13-401N8.3 20 25816621 25817468 -1 pseudogene NA NA NA NA 0 0 333 2.60519e-12 1.0558e-59 GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Pituitary:GTEx/v8/Testis:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Pituitary:GTEx/v7/Testis:GTEx/v6/Pituitary:GTEx/v6/Testis:GTEx/v6/Thyroid NA No NA 6.87068e-12 rs1888995 62 ENSG00000226203 RP4-760C5.5 20 25936448 25949924 1 lincRNA 101926955 LINC01733 NA NA 0 0 0 NA NA NA NA Yes Mesendoderm NA rs1888995 62 ENSG00000231081 RP4-760C5.3 20 25989427 25991167 -1 lincRNA NA NA NA NA 0 0 326 8.47606e-11 5.43337e-15 GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Nerve_Tibial:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Hippocampus:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Nerve_Tibial:GTEx/v6/Brain_Cerebellum:GTEx/v6/Nerve_Tibial NA No NA 6.87068e-12 rs1888995 62 ENSG00000204556 CTD-2514C3.1 20 25999468 26001320 1 pseudogene NA NA NA NA 0 0 330 5.87487e-10 1.67773e-18 PsychENCODE_eQTLs:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Cells_EBV-transformed_lymphocytes:GTEx/v8/Artery_Tibial:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Mucosa:GTEx/v8/Pituitary:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Artery_Tibial:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Pituitary:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Testis:GTEx/v6/Brain_Cerebellum:GTEx/v6/Pituitary:GTEx/v6/Testis NA No NA 6.87068e-12 rs1888995 62 ENSG00000125804 FAM182A 20 26035291 26073683 1 processed_transcript 284800 FAM182A NA NA 0 0 338 2.61887e-35 1.32453e-66 PsychENCODE_eQTLs:CMC_SVA_cis:CMC_NoSVA_cis:BRAINEAC/CRBL:BRAINEAC/HIPP:BRAINEAC/OCTX:BRAINEAC/THAL:GTEx/v8/Brain_Amygdala:GTEx/v8/Brain_Anterior_cingulate_cortex_BA24:GTEx/v8/Brain_Caudate_basal_ganglia:GTEx/v8/Brain_Cerebellar_Hemisphere:GTEx/v8/Brain_Cerebellum:GTEx/v8/Brain_Cortex:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Brain_Hippocampus:GTEx/v8/Brain_Hypothalamus:GTEx/v8/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v8/Brain_Putamen_basal_ganglia:GTEx/v8/Brain_Spinal_cord_cervical_c-1:GTEx/v8/Brain_Substantia_nigra:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Pituitary:GTEx/v8/Prostate:GTEx/v8/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Brain_Anterior_cingulate_cortex_BA24:GTEx/v7/Brain_Caudate_basal_ganglia:GTEx/v7/Brain_Cerebellar_Hemisphere:GTEx/v7/Brain_Cerebellum:GTEx/v7/Brain_Cortex:GTEx/v7/Brain_Frontal_Cortex_BA9:GTEx/v7/Brain_Hippocampus:GTEx/v7/Brain_Hypothalamus:GTEx/v7/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v7/Brain_Putamen_basal_ganglia:GTEx/v7/Brain_Substantia_nigra:GTEx/v7/Pituitary:GTEx/v7/Skin_Not_Sun_Exposed_Suprapubic:GTEx/v7/Skin_Sun_Exposed_Lower_leg:GTEx/v7/Thyroid:GTEx/v6/Brain_Caudate_basal_ganglia:GTEx/v6/Brain_Cerebellar_Hemisphere:GTEx/v6/Brain_Cerebellum:GTEx/v6/Brain_Cortex:GTEx/v6/Brain_Frontal_Cortex_BA9:GTEx/v6/Brain_Hippocampus:GTEx/v6/Brain_Nucleus_accumbens_basal_ganglia:GTEx/v6/Pituitary:GTEx/v6/Skin_Sun_Exposed_Lower_leg:GTEx/v6/Thyroid NA No NA 6.87068e-12 rs1888995 62 ENSG00000240108 NCOR1P1 20 26084052 26094664 -1 pseudogene 149934 NCOR1P1 NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops 7.29458e-12 rs1888995 62 ENSG00000227195 MIR663A 20 26167556 26232162 -1 processed_transcript 284801 MIR663A NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops NA rs1888995 62 ENSG00000238129 RP3-410C9.2 20 26171625 26174582 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes Promoter_anchored_loops:Left_Ventricle:Mesenchymal_Stem_Cell:Mesendoderm:hESC 6.87068e-12 rs1888995 62 ENSG00000101464 PIGU 20 33148346 33264910 -1 protein_coding 128869 PIGU 0.813069113456619 -0.437100444 0 0 18 1.382e-08 0.00018990346573825 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000157601 MX1 21 42792231 42831141 1 protein_coding 4599 MX1 4.50420824011591e-09 0.855740031 0 0 10 1.2198e-06 0.00970198364200433 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000159873 CCDC117 22 29168662 29185283 1 protein_coding 150275 CCDC117 0.619564484902431 0.007346459 0 0 1 5.0669e-06 0.033247213405182 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000100296 THOC5 22 29901868 29951205 -1 protein_coding 8563 THOC5 0.000462815234823358 1.612670127 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs2267161 63 ENSG00000234208 CTA-256D12.11 22 29909878 29931379 -1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs2267161 63 ENSG00000239282 GATSL3 22 30681106 30685616 -1 protein_coding 652968 GATSL3 0.453126498226772 NA 0 0 3 2.1747e-12 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA 7.44732e-11 rs2267161 63 ENSG00000248751 RP1-130H16.18 22 30681227 30695471 -1 protein_coding NA NA NA NA 0 0 1 6.39136e-07 0.000525115366254707 BIOSQTL/BIOS_eQTL_geneLevel NA No NA NA rs2267161 63 ENSG00000099995 SF3A1 22 30727977 30752936 -1 protein_coding 10291 SF3A1 0.994075395519488 -0.822731994 0 0 1 0.000154747 4.25989e-14 GTEx/v8/Heart_Atrial_Appendage NA No NA 7.44732e-11 rs2267161 63 ENSG00000187860 CCDC157 22 30752624 30774647 1 protein_coding 550631 CCDC157 2.42416018108272e-15 -0.484094636 0 0 3 5.5988e-06 1.30829e-12 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Spleen:GTEx/v7/Testis NA No NA 7.44732e-11 rs2267161 63 ENSG00000241528 RP1-130H16.16 22 30770930 30773862 -1 antisense NA NA NA NA 0 0 2 1.79777e-05 9.1078e-15 GTEx/v7/Artery_Aorta NA No NA NA rs2267161 63 ENSG00000099999 RNF215 22 30773835 30817760 -1 protein_coding 200312 RNF215 0.000386646001224259 0.354269218 0 0 4 3.88937e-06 2.36046e-10 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Brain_Frontal_Cortex_BA9:GTEx/v8/Colon_Transverse:GTEx/v8/Nerve_Tibial:GTEx/v8/Thyroid NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.44732e-11 rs2267161 63 ENSG00000249590 RP4-539M6.19 22 30805244 30824977 1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.44732e-11 rs2267161 63 ENSG00000268538 KIAA1658 22 30814212 30814469 -1 protein_coding NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.44732e-11 rs2267161 63 ENSG00000273350 RP4-539M6.20 22 30816501 30816901 1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.44732e-11 rs2267161 63 ENSG00000222915 RNU6-564P 22 30817034 30817137 1 snRNA 106479817 RNU6-564P NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.44732e-11 rs2267161 63 ENSG00000272689 RP4-539M6.21 22 30817195 30817525 -1 sense_intronic NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.44732e-11 rs2267161 63 ENSG00000242114 MTFP1 22 30821518 30825045 1 protein_coding 51537 MTFP1 0.316869739233121 0.009494032 0 0 3 7.8123e-07 6.31467e-08 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:GTEx/v8/Heart_Atrial_Appendage NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.44732e-11 rs2267161 63 ENSG00000273428 RP4-539M6.22 22 30831531 30832234 1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.44732e-11 rs2267161 63 ENSG00000203606 AC004832.1 22 30831531 30832231 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.44732e-11 rs2267161 63 ENSG00000230137 RP4-539M6.18 22 30835824 30836305 1 pseudogene NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90:Mesenchymal_Stem_Cell:Mesendoderm:hESC 7.44732e-11 rs2267161 63 ENSG00000100012 SEC14L3 22 30843946 30868036 -1 protein_coding 266629 SEC14L3 4.21057781805564e-18 0.588293434 0 0 3 9.63587e-14 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Lung:GTEx/v8/Thyroid:GTEx/v7/Thyroid NA No NA 7.44732e-11 rs2267161 63 ENSG00000181123 RP4-539M6.14 22 30879341 30888791 1 antisense 107985579 LOC107985579 NA NA 1 0.218 2 0.000151426 1.57321e-17 GTEx/v8/Lung NA No NA 7.44732e-11 rs2267161 63 ENSG00000133488 SEC14L4 22 30884900 30901698 -1 protein_coding 284904 SEC14L4 5.59567327026563e-05 -0.167025258 2 0.469 4 5.77417e-10 4.21612e-34 eQTLGen_cis_eQTLs:GTEx/v8/Adrenal_Gland:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Lung:GTEx/v8/Nerve_Tibial:GTEx/v8/Testis:GTEx/v8/Thyroid:GTEx/v8/Uterus:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Lung:GTEx/v7/Nerve_Tibial:GTEx/v7/Thyroid NA No NA 7.44732e-11 rs2267161 63 ENSG00000214491 SEC14L6 22 30918786 30942669 -1 protein_coding 730005 SEC14L6 0.0459161840126631 0.383963547 1 0.914 4 4.4722e-14 5.36208e-40 BIOSQTL/BIOS_eQTL_geneLevel:CMC_SVA_cis:CMC_NoSVA_cis:GTEx/v8/Artery_Aorta:GTEx/v8/Artery_Coronary:GTEx/v8/Artery_Tibial:GTEx/v8/Colon_Transverse:GTEx/v8/Esophagus_Gastroesophageal_Junction:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Nerve_Tibial:GTEx/v8/Minor_Salivary_Gland:GTEx/v8/Small_Intestine_Terminal_Ileum:GTEx/v8/Testis:GTEx/v8/Vagina:GTEx/v7/Adipose_Visceral_Omentum:GTEx/v7/Artery_Tibial:GTEx/v7/Esophagus_Gastroesophageal_Junction:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Nerve_Tibial:GTEx/v6/Esophagus_Gastroesophageal_Junction:GTEx/v6/Esophagus_Muscularis NA No NA 7.44732e-11 rs2267161 63 ENSG00000128242 GAL3ST1 22 30950622 30970574 -1 protein_coding 9514 GAL3ST1 0.379107293050681 -0.152500117 2 19.23 0 NA NA NA NA No NA 7.44732e-11 rs2267161 63 ENSG00000100029 PES1 22 30972612 31003070 -1 protein_coding 23481 PES1 0.655113488767418 0.694614816 0 0 3 7.66415e-19 0 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Pancreas:GTEx/v8/Cells_Cultured_fibroblasts:GTEx/v7/Pancreas NA No NA 7.44732e-11 rs2267161 63 ENSG00000185339 TCN2 22 31002825 31023265 1 protein_coding 6948 TCN2 0.0222895531737769 0.72677352 0 0 4 6.3125e-115 0 PsychENCODE_eQTLs:eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Adipose_Subcutaneous:GTEx/v8/Adipose_Visceral_Omentum:GTEx/v8/Artery_Tibial:GTEx/v8/Heart_Left_Ventricle:GTEx/v8/Muscle_Skeletal:GTEx/v8/Nerve_Tibial:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Thyroid:GTEx/v7/Adipose_Subcutaneous:GTEx/v7/Esophagus_Muscularis:GTEx/v7/Heart_Left_Ventricle:GTEx/v7/Muscle_Skeletal:GTEx/v7/Skin_Sun_Exposed_Lower_leg NA No NA 7.44732e-11 rs2267161 63 ENSG00000100036 SLC35E4 22 31031639 31065003 1 protein_coding 339665 SLC35E4 0.032252529013455 1.06618031 0 0 4 7.02668e-15 0 BIOSQTL/BIOS_eQTL_geneLevel:GTEx/v8/Esophagus_Muscularis:GTEx/v8/Skin_Sun_Exposed_Lower_leg:GTEx/v8/Testis NA No NA 7.44732e-11 rs2267161 63 ENSG00000167065 DUSP18 22 31048038 31063877 -1 protein_coding 150290 DUSP18 0.0618037276513494 0.905276245 0 0 3 1.6343e-67 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA 7.44732e-11 rs2267161 63 ENSG00000250318 CTA-963H5.5 22 31049864 31050801 -1 pseudogene NA NA NA NA 0 0 3 9.73277e-12 0 eQTLGen_cis_eQTLs:BIOSQTL/BIOS_eQTL_geneLevel NA No NA 7.44732e-11 rs2267161 63 ENSG00000184792 OSBP2 22 31089769 31303811 1 protein_coding 23762 OSBP2 0.0361487444611796 0.065421533 0 0 1 7.3257e-06 0.0449588477366255 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000264661 MIR3200 22 31127544 31127628 1 miRNA 100422912 MIR3200 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs2267161 63 ENSG00000237977 EIF4HP2 22 31298206 31298768 1 pseudogene 100421545 EIF4HP2 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs2267161 63 ENSG00000235989 MORC2-AS1 22 31318295 31328436 1 antisense 150291 MORC2-AS1 NA NA 0 0 0 NA NA NA NA Yes Mesenchymal_Stem_Cell NA rs2267161 63 ENSG00000133422 MORC2 22 31321117 31364284 -1 protein_coding 22880 MORC2 0.999967480342235 -0.841521038 0 0 0 NA NA NA NA Yes IMR90 NA rs2267161 63 ENSG00000253352 TUG1 22 31366663 31375381 1 antisense 55000 TUG1 NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs2267161 63 ENSG00000269987 RP3-430N8.11 22 31372501 31374834 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs2267161 63 ENSG00000269972 RP3-430N8.10 22 31373502 31373844 -1 lincRNA NA NA NA NA 0 0 0 NA NA NA NA Yes IMR90 NA rs2267161 63 ENSG00000235573 RP3-412A9.12 22 31509003 31509382 1 pseudogene NA NA NA NA 0 0 1 7.99925447948e-05 0.049 DICE/T_CD8_naive NA No NA 7.44732e-11 rs2267161 63 ENSG00000100281 HMGXB4 22 35653445 35691800 1 protein_coding 10042 HMGXB4 0.218813415259936 -0.309086129 0 0 1 1.9973e-14 0 eQTLGen_trans_eQTLs NA No NA NA rs34000805 59 ENSG00000047230 CTPS2 23 16606126 16731059 -1 protein_coding 56474 CTPS2 0.433684610695428 -0.63980768 0 0 14 1.316e-07 0.00141906316714806 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57 ENSG00000158578 ALAS2 23 55035488 55057497 -1 protein_coding 212 ALAS2 0.970654597578417 -0.071640994 0 0 3 8.0131e-16 0 eQTLGen_trans_eQTLs NA No NA NA rs115740542 22 ENSG00000172465 TCEAL1 23 102883632 102885881 1 protein_coding 9338 TCEAL1 0.488641003961424 -0.38178984 0 0 16 1.7649e-08 0.000232378001549187 eQTLGen_trans_eQTLs NA No NA NA rs62064364 57