Interactive Figures for Confounds in UK Biobank

Correlation matrices for confound groups

CORR/corr_NORMAL.html
CORR/corr_REDUCED.html
CORR/corr_SPECIAL.html

Mean / Max Unique Variance of IDPs Explained by non-linear confounds

NONLIN/MEAN_NON-LINEAR.html
NONLIN/MAX_NON-LINEAR.html

Mean / Max Unique Variance of IDPs Explained by crossed-term confounds

CT/MEAN_CROSSED-TERMS.html
CT/MAX_CROSSED-TERMS.html

Manhattan plots with the % of Unique Variance of the IDPs Explained by Non-linear confounds and Crossed-terms

NONLIN/MNHT_NON-LINEAR.html
CT/MNHT_CROSSED-TERMS.html

Violin plots with the Variance Explained by confound groups (normal configuration) per IDPs

VE_NORMAL/ALL_IDPs_Variance_Explained.html
VE_NORMAL/T1_Variance_Explained.html
VE_NORMAL/T2_FLAIR_Variance_Explained.html
VE_NORMAL/FS_Variance_Explained.html
VE_NORMAL/SWI_Variance_Explained.html
VE_NORMAL/dMRI_Variance_Explained.html
VE_NORMAL/tfMRI_Variance_Explained.html
VE_NORMAL/rfMRI_AMP_Variance_Explained.html
VE_NORMAL/rfMRI_CONN_Variance_Explained.html

Violin plots with the UNIQUE Variance Explained by confound groups (normal configuration) per IDPs

VE_NORMAL/ALL_IDPs_Unique_Variance_Explained.html
VE_NORMAL/T1_Unique_Variance_Explained.html
VE_NORMAL/T2_FLAIR_Unique_Variance_Explained.html
VE_NORMAL/FS_Unique_Variance_Explained.html
VE_NORMAL/SWI_Unique_Variance_Explained.html
VE_NORMAL/dMRI_Unique_Variance_Explained.html
VE_NORMAL/tfMRI_Unique_Variance_Explained.html
VE_NORMAL/rfMRI_AMP_Unique_Variance_Explained.html
VE_NORMAL/rfMRI_CONN_Unique_Variance_Explained.html

Violin plots with the Variance Explained by confound groups (reduced configuration) per IDPs

VE_REDUCED/ALL_IDPs_Variance_Explained.html
VE_REDUCED/T1_Variance_Explained.html
VE_REDUCED/T2_FLAIR_Variance_Explained.html
VE_REDUCED/FS_Variance_Explained.html
VE_REDUCED/SWI_Variance_Explained.html
VE_REDUCED/dMRI_Variance_Explained.html
VE_REDUCED/tfMRI_Variance_Explained.html
VE_REDUCED/rfMRI_AMP_Variance_Explained.html
VE_REDUCED/rfMRI_CONN_Variance_Explained.html

Violin plots with the UNIQUE Variance Explained by confound groups (reduced configuration) per IDPs

VE_REDUCED/ALL_IDPs_Unique_Variance_Explained.html
VE_REDUCED/T1_Unique_Variance_Explained.html
VE_REDUCED/T2_FLAIR_Unique_Variance_Explained.html
VE_REDUCED/FS_Unique_Variance_Explained.html
VE_REDUCED/SWI_Unique_Variance_Explained.html
VE_REDUCED/dMRI_Unique_Variance_Explained.html
VE_REDUCED/tfMRI_Unique_Variance_Explained.html
VE_REDUCED/rfMRI_AMP_Unique_Variance_Explained.html
VE_REDUCED/rfMRI_CONN_Unique_Variance_Explained.html

Violin plots with the Variance Explained and UNIQUE Variance Explained by SITE per IDPs

SITE/VE_UVE_SITE.html

Violin plots with the Variance Explained by different global confound configurations per IDPs

VE_GLOBAL/ALL_IDPs_Variance_Explained.html
VE_GLOBAL/T1_Variance_Explained.html
VE_GLOBAL/T2_FLAIR_Variance_Explained.html
VE_GLOBAL/FS_Variance_Explained.html
VE_GLOBAL/SWI_Variance_Explained.html
VE_GLOBAL/dMRI_Variance_Explained.html
VE_GLOBAL/tfMRI_Variance_Explained.html
VE_GLOBAL/rfMRI_AMP_Variance_Explained.html
VE_GLOBAL/rfMRI_CONN_Variance_Explained.html

Bland-Altman plots with the change in correlation P values between IDPs and BODY variables before and after deconfounding with one group of confounds

BA/BA_BODY_ACQ_DATE.html
BA/BA_BODY_ACQ_TIME.html
BA/BA_BODY_AGE.html
BA/BA_BODY_AGE_SEX.html
BA/BA_BODY_BATCH.html
BA/BA_BODY_CMRR.html
BA/BA_BODY_CROSSED_TERMS.html
BA/BA_BODY_DVARS.html
BA/BA_BODY_EDDY_QC.html
BA/BA_BODY_FLIPPED_SWI.html
BA/BA_BODY_FS_T2.html
BA/BA_BODY_NEW_EDDY.html
BA/BA_BODY_SCALING.html
BA/BA_BODY_TE.html
BA/BA_BODY_HEAD_MOTION.html
BA/BA_BODY_HEAD_MOTION_ST.html
BA/BA_BODY_HEAD_SIZE.html
BA/BA_BODY_NON_LIN.html
BA/BA_BODY_PROTOCOL.html
BA/BA_BODY_SCAN_COLD_HEAD.html
BA/BA_BODY_SCAN_HEAD_COIL.html
BA/BA_BODY_SCAN_MISC.html
BA/BA_BODY_SCAN_RAMP.html
BA/BA_BODY_SERVICE_PACK.html
BA/BA_BODY_SEX.html
BA/BA_BODY_SITE.html
BA/BA_BODY_STRUCT_MOTION.html
BA/BA_BODY_TABLE_POS.html

Bland-Altman plots with the change in correlation P values between IDPs and COGN variables before and after deconfounding with one group of confounds

BA/BA_COGN_ACQ_DATE.html
BA/BA_COGN_ACQ_TIME.html
BA/BA_COGN_AGE.html
BA/BA_COGN_AGE_SEX.html
BA/BA_COGN_BATCH.html
BA/BA_COGN_CMRR.html
BA/BA_COGN_CROSSED_TERMS.html
BA/BA_COGN_DVARS.html
BA/BA_COGN_EDDY_QC.html
BA/BA_COGN_FLIPPED_SWI.html
BA/BA_COGN_FS_T2.html
BA/BA_COGN_NEW_EDDY.html
BA/BA_COGN_SCALING.html
BA/BA_COGN_TE.html
BA/BA_COGN_HEAD_MOTION.html
BA/BA_COGN_HEAD_MOTION_ST.html
BA/BA_COGN_HEAD_SIZE.html
BA/BA_COGN_NON_LIN.html
BA/BA_COGN_PROTOCOL.html
BA/BA_COGN_SCAN_COLD_HEAD.html
BA/BA_COGN_SCAN_HEAD_COIL.html
BA/BA_COGN_SCAN_MISC.html
BA/BA_COGN_SCAN_RAMP.html
BA/BA_COGN_SERVICE_PACK.html
BA/BA_COGN_SEX.html
BA/BA_COGN_SITE.html
BA/BA_COGN_STRUCT_MOTION.html
BA/BA_COGN_TABLE_POS.html

Manhattan Plots showing the effects of different unconfounding schemes

MNHT/MNHT_NO_UNCONFOUNDING.html
MNHT/MNHT_FULL_UNCONFOUNDING.html
MNHT/MNHT_SIMPLE_UNCONFOUNDING.html
MNHT/MNHT_PCA_UNCONFOUNDING.html
MNHT/MNHT_PCA90_UNCONFOUNDING.html
MNHT/MNHT_PCA99_UNCONFOUNDING.html

Developed by Fidel Alfaro Almagro (University of Oxford), using plotly