UK Biobank Brain Imaging - Image Processing Pipeline
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The UK Biobank central image processing pipeline can be found on github at https://git.fmrib.ox.ac.uk/falmagro/UK_biobank_pipeline_v_1
Below are some large ancillary data files that are needed in conjunction with the pipeline.
FIX rfMRI cleanup training data
file: UKBiobank.RData. This should be
put into folder
BIANCA lesion segmentation training files bianca_class_data and bianca_class_data_labels. These should be put into folder bb_pipeline_v_1.0/bb_data.
Docker image creation instructions for the UK Biobank
processing pipeline and autoQC
with instructions to build the docker image.
version for UK Biobank pipelines
and training data needed by the pipeline
Docker image developed by Paul McCarthy
Alfaro Almagro, (University of Oxford)