UK Biobank Brain Imaging - Image Processing Pipeline

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The UK Biobank central image processing pipeline can be found on github at Below are some large ancillary data files that are needed in conjunction with the pipeline.

FIX rfMRI cleanup training data file: UKBiobank.RData. This should be put into folder bb_pipeline_v_1.0/bb_functional_pipeline/bb_fix_dir/training_files

BIANCA lesion segmentation training files bianca_class_data and bianca_class_data_labels. These should be put into folder bb_pipeline_v_1.0/bb_data.

Docker image creation instructions for the UK Biobank processing pipeline and autoQC

Repository with instructions to build the docker image.
FSL version for UK Biobank pipelines
Templates and training data needed by the pipeline

Docker image developed by Paul McCarthy and Fidel Alfaro Almagro, (University of Oxford) using Docker and DNANexus